TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000106_1.0 # Protein # SECIS binding protein 2 (SBP2) # Mus musculus # Complete (858 letters) Database: P.capsici/genome.fa 917 sequences; 64,023,748 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PHYCAscaffold_84 34 0.85 PHYCAscaffold_66 33 2.5 PHYCAscaffold_3 33 2.5 PHYCAscaffold_106 32 3.2 PHYCAscaffold_18 32 3.2 PHYCAscaffold_99 32 4.2 PHYCAscaffold_31 32 4.2 PHYCAscaffold_71 32 5.5 PHYCAscaffold_47 32 5.5 PHYCAscaffold_5 32 5.5 PHYCAscaffold_43 31 7.2 PHYCAscaffold_1 31 7.2 PHYCAscaffold_76 31 9.4 PHYCAscaffold_20 31 9.4 >PHYCAscaffold_84 Length = 182275 Score = 34.3 bits (77), Expect = 0.85 Identities = 25/91 (27%), Positives = 45/91 (49%) Frame = +3 Query: 671 KAKTKRRLVLGLREVLKHLKLRKLKCIIISPNCEKTQSKGGLDDTLHTIIDCACEQNIPF 730 +A +++ G E K L + I+++ + E L+ LH + C ++N+P+ Sbjct: 157575 QATNYKQIKKGANEATKTLNRGISEFIVMAADTEP------LEILLHLPLLCE-DKNVPY 157733 Query: 731 VFALNRKALGRSLNKAVPVSIVGIFSYDGAQ 761 VF ++ ALGR+ + PV I S D +Q Sbjct: 157734 VFVPSKVALGRACGVSRPVIAASITSNDASQ 157826 >PHYCAscaffold_66 Length = 294895 Score = 32.7 bits (73), Expect = 2.5 Identities = 65/343 (18%), Positives = 109/343 (31%), Gaps = 23/343 (6%) Frame = +1 Query: 50 TYYPFVQEPPAAEQKMYPEDMAFG--APTFPAQYVSSEIALHPFAYPTYTLESAQSVCSV 107 T +P P + +P A APT P+ SS+ L A P T S V Sbjct: 138556 TEFPTTWTPETEKPTRFPATDAPNTVAPTAPSASGSSDETLPTTATPVPT-----SATPV 138720 Query: 108 PTLQYDYSQARCHPGFRTAKPRHEHVCPPPQEAKGVFKKKPSDERRACEEQKSSSRRADN 167 P+ RT +P PPP + E + SS+ + Sbjct: 138721 PSTAPPAPTRPAPTPERTPEPTPWS--PPPIPSNPTTTSPTPSESSGSDSASSSTDTGSS 138894 Query: 168 AVPCEARPARGXXXXXXXXXXXXXXDGYHKRPDRKSRILAKSASTSKPEFEFSRLDFPEL 227 P + ++ P ++ S T+ P S E+ Sbjct: 138895 NAPSPSESSQSSESSNSAEDVTYSPPPVTSTPQTQAPTTT-STPTAPPSESSSSASKTEV 139071 Query: 228 QSPKNSNMPET-------QKPPRWGPLGPAASNMPLLGDVGKPVADMVEGKMVKSDHTDG 280 S S M + W P P +N P A G S + Sbjct: 139072 ASSSGSTMITSASESSSGSSDTTWSP--PPVTNAPQPTTAPSTTAPPTSGSTTSSSDSGA 139245 Query: 281 AVTS--------------NATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMIN 326 +S +A++ S + T E + +P TVS+DSA A+++ + Sbjct: 139246 TASSGSSDTPTPGTDTASSASSGSATDTDESTPSPAPVTRAPTVSTDSAEASDSGNDISQ 139425 Query: 327 LKKTTSSADAKNVSVTSEALSSNPSYNREKRVYPAPKAKASQG 369 +T+ S+ + + + + ++ PS + P+ S G Sbjct: 139426 TAQTSDSSASDSTTPSPAPVTRTPSSGAIMTMPPSSATSDSMG 139554 Score = 30.8 bits (68), Expect = 9.4 Identities = 18/66 (27%), Positives = 29/66 (43%) Frame = -3 Query: 554 SAVSLTVASDDSQDVESGASNQTPSQDNPTGPEKTEESVSSTPVVEGESEEPAGTEFQRD 613 +AV T SD V++ S + T + + PV EG+ +E A E ++ Sbjct: 35741 TAVESTPVSDSISPVDTMESEVAVASAESFDSASTSDVQPAHPVQEGQEDEEATPELSKE 35562 Query: 614 PEACQP 619 PE+ P Sbjct: 35561 PESENP 35544 >PHYCAscaffold_3 Length = 1611504 Score = 32.7 bits (73), Expect = 2.5 Identities = 24/103 (23%), Positives = 50/103 (48%) Frame = -1 Query: 672 AKTKRRLVLGLREVLKHLKLRKLKCIIISPNCEKTQSKGGLDDTLHTIIDCACEQNIPFV 731 A RRLVLG+ EV + L K+ ++++ + ++ D + ++ A E+++P + Sbjct: 549489 AVRSRRLVLGMHEVRRGLVCNKIVLLLVATDFHGNEAG---QDNYNKLVAMATERDVPVL 549319 Query: 732 FALNRKALGRSLNKAVPVSIVGIFSYDGAQDQFHKMVELTMAA 774 +NR L G+ DG+ D+ + V +++A+ Sbjct: 549318 ALMNRCEDNTGLFDC-HFEANGVMYSDGS*DESYTRVYVSVAS 549193 >PHYCAscaffold_106 Length = 144267 Score = 32.3 bits (72), Expect = 3.2 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%) Frame = +2 Query: 570 SGASNQTPSQDNPTGP---EKTEESVSSTPVVEGESEEPAGT 608 SGA N P Q+ P P EK EE V TP ++ E+ T Sbjct: 90683 SGAQNNPPKQEEPEKPEELEKPEEPVVDTPEIDDTLEQEVAT 90808 >PHYCAscaffold_18 Length = 984210 Score = 32.3 bits (72), Expect = 3.2 Identities = 34/132 (25%), Positives = 50/132 (37%), Gaps = 1/132 (0%) Frame = +2 Query: 209 SASTSKPEFEFSRLDFPELQSPKNSNMPETQKPPRWGPLGPAASNMPLLGDVGK-PVADM 267 S STS+ + D P +SP + P T+ P P A+ MP P Sbjct: 323978 SGSTSQND-----TDAPSTKSP-GTEAPVTEAPATEAPTSAPATEMPTAAPTADTPTTVS 324139 Query: 268 VEGKMVKSDHTDGAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINL 327 + ++DH SNA S E +TP QT S + + ++E T Sbjct: 324140 PATEAPETDH------SNADQVDQSEASEDQYTPSTESADQTESVEQSESSEAPTPASGT 324301 Query: 328 KKTTSSADAKNV 339 K TS D ++ Sbjct: 324302 KTQTSKKDCASL 324337 >PHYCAscaffold_99 Length = 152830 Score = 32.0 bits (71), Expect = 4.2 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 6/64 (9%) Frame = -1 Query: 225 PELQSPKNSNMPETQKPPRWGPLGPAASNMPLLGDVGKPVADMV------EGKMVKSDHT 278 PE P S+ PET KPP W P P+ KP A ++ V SD Sbjct: 139567 PETPKPPVSSSPETPKPPVWS--SPETPKPPVSSSPEKPKAQVIFLDNEPSKDFVPSDFG 139394 Query: 279 DGAV 282 D A+ Sbjct: 139393 DEAI 139382 >PHYCAscaffold_31 Length = 686815 Score = 32.0 bits (71), Expect = 4.2 Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 16/150 (10%) Frame = -1 Query: 233 SNMPETQKPPRWGPLGPAA-SNMPLLGDVGKPV------------ADMVEGKMVKSDHTD 279 ++ P T P + P S++P+L D P A + + + T Sbjct: 613501 TSAPVTSAPATFAPATEDPFSDIPILADTPPPTTSTPITSAPETSAPVTSAPISPAPETS 613322 Query: 280 GAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTS---SADA 336 VTS TTS+P + ++ P + +S A +T T+ + TT D Sbjct: 613321 APVTSAPTTSAPPTSTPVTSAP---VTSAPATSAPATSTPITTAPVTSTPTTEDPFGTDI 613151 Query: 337 KNVSVTSEALSSNPSYNREKRVYPAPKAKA 366 ++VT+ ++S P + + PAP+ A Sbjct: 613150 PILAVTTAPVTSAPVTSAP--ISPAPETSA 613067 Score = 32.0 bits (71), Expect = 4.2 Identities = 35/161 (21%), Positives = 58/161 (36%), Gaps = 15/161 (9%) Frame = -1 Query: 482 VGAVPVLSKDASSSERGRRSSQMKTPHNPLDS--------SAPLMKKGKQ----REIPKA 529 VG V + A+++ + + TP P D+ + P++ +P A Sbjct: 611662 VGTVGPPTSTAAATPGSTPETPLSTPTAPADTPTVEPPMTTLPILADTPTTTATNPVPSA 611483 Query: 530 KKPTSLKKIILKXXXXXXXXXXXXSAVSLTVASDDS--QDVESGASNQTPS-QDNPTGPE 586 + PT+ S S VA DS V SG TPS NPT Sbjct: 611482 QTPTTATAASADPATSAPENTASASPSSPPVARSDSTPSPVSSGPQTGTPSVATNPTSDS 611303 Query: 587 KTEESVSSTPVVEGESEEPAGTEFQRDPEACQPAPDSATFP 627 + +S + EG +PA + +P + + ++ P Sbjct: 611302 SPGPASTSPAIAEGSGTQPATSRTPSNPSSSTGSRSASRSP 611180 >PHYCAscaffold_71 Length = 252329 Score = 31.6 bits (70), Expect = 5.5 Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 6/157 (3%) Frame = -3 Query: 207 AKSASTSKPEFEFSRLDFPELQSPKNSNMPETQKPPRWGPLGPAASNMPLLGDV------ 260 AKS +T+ P+ ++ + P + ++ P TQK + PL A + V Sbjct: 121119 AKSKATASPKTVAAKANKPSANASQSKPSPTTQKSAQKKPLKAAGKDKLTTTVVVPKEVK 120940 Query: 261 GKPVADMVEGKMVKSDHTDGAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATEN 320 K VA K +K+ +N + + + T + + + T + DS + E Sbjct: 120939 AKTVATASSAKEIKAKTASNVAPANESKAKAASTSDAAKESK---TKATNTVDS--SKEP 120775 Query: 321 VTSMINLKKTTSSADAKNVSVTSEALSSNPSYNREKR 357 T K + A+N SV S+ S+ + +R Sbjct: 120774 KTKASPSKPKVAGKAARNKSVASDKPVQTTSHGKRRR 120664 >PHYCAscaffold_47 Length = 556112 Score = 31.6 bits (70), Expect = 5.5 Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 10/128 (7%) Frame = -2 Query: 510 PLDSSAPLMKKGKQREIPKAKKPTSLKKIILKXXXXXXXXXXXXSAVSLTVASDDSQDVE 569 P +S+ K K + K+ K ++ K K S+ T + + Sbjct: 522601 PTESTPSKSKSSKSSKSSKSSKSSNHSKSSSKSSKSSSKRKNSTSSSKGTKTNKSTTSSS 522422 Query: 570 SG-ASNQTPSQ-----DNPTGPEKTE----ESVSSTPVVEGESEEPAGTEFQRDPEACQP 619 +G A+N TP + D P+ P E + TP VE EEP E +++PE + Sbjct: 522421 NGSANNLTPPKVPSAPDAPSAPALCELCKKKLTGETPQVE---EEPVKKEVKKEPEVVKK 522251 Query: 620 APDSATFP 627 P P Sbjct: 522250 EPSQIAVP 522227 >PHYCAscaffold_5 Length = 1593284 Score = 31.6 bits (70), Expect = 5.5 Identities = 12/48 (25%), Positives = 28/48 (58%) Frame = -1 Query: 562 SDDSQDVESGASNQTPSQDNPTGPEKTEESVSSTPVVEGESEEPAGTE 609 SDDS++ E G+ +++ +++ + +++E + E ESE + +E Sbjct: 728003 SDDSEEAEDGSESESNEEESGSDEDESESGEDESESAESESESDSASE 727860 >PHYCAscaffold_43 Length = 531961 Score = 31.2 bits (69), Expect = 7.2 Identities = 19/44 (43%), Positives = 25/44 (56%) Frame = -2 Query: 472 KPSSRPVVFSVGAVPVLSKDASSSERGRRSSQMKTPHNPLDSSA 515 +PSS SV + + A +S+ G RSSQ +TP PL SSA Sbjct: 517875 EPSSSSSSHSVFNLLRATLAARTSQWGNRSSQWRTPRRPLTSSA 517744 >PHYCAscaffold_1 Length = 2170955 Score = 31.2 bits (69), Expect = 7.2 Identities = 17/57 (29%), Positives = 25/57 (43%) Frame = -1 Query: 567 DVESGASNQTPSQDNPTGPEKTEESVSSTPVVEGESEEPAGTEFQRDPEACQPAPDS 623 D + G+ + P TG +EE S P + SE+P E DPE + D+ Sbjct: 578819 DSDRGSPVRPPRPRQITGLTDSEEEPSDEPSEDESSEDPEDAESSEDPEDAESNDDA 578649 >PHYCAscaffold_76 Length = 209683 Score = 30.8 bits (68), Expect = 9.4 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = +3 Query: 128 PRHEHVC-PPPQEAKGVFKKKPSDERRACEEQKSSSRRADNAVPCEARP 175 P HEHVC P Q+ + K + ++E R ++K S+ + + C RP Sbjct: 115890 PGHEHVCGAPRQQERQCLKLERAEESRRPLQKKQSNSQVYSTSGCLTRP 116036 >PHYCAscaffold_20 Length = 899172 Score = 30.8 bits (68), Expect = 9.4 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Frame = -3 Query: 571 GASNQTPSQDNPTGPEKTEESVSSTP--VVEGESEEPAGTEFQRDPEACQPAPDSATFP 627 G + +TPS P+ PE T E+ S+TP E +E P+ T PE P S T P Sbjct: 758128 GPTTETPSTTPPSTPEPTTETPSTTPPSTPEPTTETPSTTP-PTTPEPTTETP-STTLP 757958 Score = 30.8 bits (68), Expect = 9.4 Identities = 15/55 (27%), Positives = 26/55 (47%) Frame = -3 Query: 93 YPTYTLESAQSVCSVPTLQYDYSQARCHPGFRTAKPRHEHVCPPPQEAKGVFKKK 147 YP + +C++ LQ S +CH G T +++CP AK + K++ Sbjct: 537232 YPLSLSRQSVPICTLLNLQAARSLKKCHTGSCTTDGPWKYICPS*PVAKAI*KQR 537068 Database: P.capsici/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 64,023,748 Number of sequences in database: 917 Lambda K H 0.311 0.126 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,274,761 Number of Sequences: 917 Number of extensions: 941246 Number of successful extensions: 4839 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 109 Number of HSP's successfully gapped in prelim test: 87 Number of HSP's that attempted gapping in prelim test: 3048 Number of HSP's gapped (non-prelim): 3187 length of query: 858 length of database: 21,341,249 effective HSP length: 114 effective length of query: 744 effective length of database: 21,236,711 effective search space: 15800112984 effective search space used: 15800112984 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 68 (30.8 bits)