TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000106_1.0 # Protein # SECIS binding protein 2 (SBP2) # Mus musculus # Complete (858 letters) Database: L.tarentolae/genome.fa 7267 sequences; 31,598,840 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Lt_contig972 | | 1 to 21524 36 0.10 Lt_contig898 | | 1 to 5559 33 0.87 Lt_contig117 | | 1 to 15752 32 1.5 Lt_contig842 | | 1 to 10595 32 1.9 Lt_contig2679 | | 1 to 1527 32 2.5 Lt_contig4429 | | 1 to 2444 31 3.3 Lt_contig7136 | | 1 to 18923 31 3.3 Lt_contig462 | | 1 to 16589 31 3.3 Lt_contig4623 | | 1 to 8772 31 4.3 Lt_contig312 | | 1 to 4357 31 4.3 Lt_contig5958 | | 1 to 21929 30 5.7 Lt_contig2946 | | 1 to 1917 30 7.4 Lt_contig426 | | 1 to 12442 30 7.4 Lt_contig1293 | | 1 to 3010 30 9.7 Lt_contig1282 | | 1 to 5615 30 9.7 Lt_contig6682 | | 1 to 4504 30 9.7 Lt_contig429 | | 1 to 15886 30 9.7 >Lt_contig972 | | 1 to 21524 Length = 21524 Score = 36.2 bits (82), Expect = 0.10 Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 7/86 (8%) Frame = -1 Query: 57 EPPAAEQKMYPEDMAFGAPTFPAQ----YVSSEIALH--PFAYPTYTLESAQSVCSVPTL 110 +PP + + P A+ PT P V + +LH P Y + L + CS L Sbjct: 13136 QPPPSPGVLVPAAQAYQPPTGPQHEPDALVDVDASLHREPHCYQRHYLPQREFSCSQKAL 12957 Query: 111 QYDYSQ-ARCHPGFRTAKPRHEHVCP 135 S A C P R PR H+CP Sbjct: 12956 *GRLSSPALCEPPGRRGAPRQSHLCP 12879 >Lt_contig898 | | 1 to 5559 Length = 5559 Score = 33.1 bits (74), Expect = 0.87 Identities = 31/145 (21%), Positives = 63/145 (43%) Frame = +1 Query: 225 PELQSPKNSNMPETQKPPRWGPLGPAASNMPLLGDVGKPVADMVEGKMVKSDHTDGAVTS 284 P + P++ P +KPPRW P ++ G + S + + +S Sbjct: 3811 PPRKPPRSPPRPP-RKPPRW---SPRSARWNFCG-----TSSSSSSSSSSSSSSSSSSSS 3963 Query: 285 NATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSSADAKNVSVTSE 344 ++++SS S LS P + SS ++++T + +S ++L ++ + + S +S Sbjct: 3964 SSSSSSSSSLSSLSSLPSS---SSSSSSSASSSTSSSSSPMSLSSRSAGGISSSSSPSSS 4134 Query: 345 ALSSNPSYNREKRVYPAPKAKASQG 369 + SS+ S + A A+ G Sbjct: 4135 SSSSSSSSSSSSSSSSLSSAPAAAG 4209 >Lt_contig117 | | 1 to 15752 Length = 15752 Score = 32.3 bits (72), Expect = 1.5 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%) Frame = -2 Query: 114 YSQARCHPGFRTAKPRHEHVCPPPQEAKGVF---KKKPSDERRACEEQK 159 YS++R H G+R KP+ +V P +F K KP + RAC K Sbjct: 724 YSRSRAHRGWRNQKPQKANVK*PSTMRSDMFSVCKLKPRNSTRACRGAK 578 >Lt_contig842 | | 1 to 10595 Length = 10595 Score = 32.0 bits (71), Expect = 1.9 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 5/100 (5%) Frame = +1 Query: 268 VEGKMVKSDHTDGAVTSNATTSSP-----SCTQELSWTPMGYIVRQTVSSDSAAATENVT 322 VE + HT +T+ SP SC+ + SW + R+ S +++ EN + Sbjct: 4489 VEISSYSTRHTTSPITAARPAPSPLPHGISCSLDASWRRTWSVTRRDCSRGTSSGFENWS 4668 Query: 323 SMINLKKTTSSADAKNVSVTSEALSSNPSYNREKRVYPAP 362 + +T +SA S LSS+ EK +P P Sbjct: 4669 IFLATCRTFASA--------STLLSSSGRVEVEKATWPHP 4764 >Lt_contig2679 | | 1 to 1527 Length = 1527 Score = 31.6 bits (70), Expect = 2.5 Identities = 16/52 (30%), Positives = 25/52 (48%) Frame = -1 Query: 121 PGFRTAKPRHEHVCPPPQEAKGVFKKKPSDERRACEEQKSSSRRADNAVPCE 172 P R + H+ PP+E +G ++ P D R+A + +K S VP E Sbjct: 591 PNRRFERETHQRRHIPPKERRGALEETPGDSRQAAKPKKRSHHFPSLQVP*E 436 >Lt_contig4429 | | 1 to 2444 Length = 2444 Score = 31.2 bits (69), Expect = 3.3 Identities = 21/78 (26%), Positives = 29/78 (37%) Frame = +3 Query: 73 GAPTFPAQYVSSEIALHPFAYPTYTLESAQSVCSVPTLQYDYSQARCHPGFRTAKPRHEH 132 GA FP+Q S L+PF+ P+ T P + D+ C P Sbjct: 87 GASAFPSQPSSP---LNPFSSPSLTFPPPAHAARAPIMSSDFETLSCSP----------- 224 Query: 133 VCPPPQEAKGVFKKKPSD 150 C P E +G+ SD Sbjct: 225 ECSEPGERRGISSGASSD 278 >Lt_contig7136 | | 1 to 18923 Length = 18923 Score = 31.2 bits (69), Expect = 3.3 Identities = 31/122 (25%), Positives = 44/122 (36%), Gaps = 11/122 (9%) Frame = -3 Query: 45 PGCAATYYPFVQEPPAAEQKMYPE---------DMAFGAPTFPAQYVSSEIALHPFAYPT 95 P AAT+Y + E P E++ + + AQ SS HP + Sbjct: 357 PDAAATWYAKIGEKPLGEEEEKGGGSSIRTGL*ERTHALTCYHAQLRSSN-RFHPHTH-- 187 Query: 96 YTLESAQSVCSVPTLQYDYSQARCHPGFRTAKPRHEHVCPPPQEAKGVFKKKPSDER--R 153 T + Y+ HP P HEH+CP ++A GV P+ R Sbjct: 186 -------------THTHPYTPTPTHPHI----PTHEHLCPAVRDAYGVVTYAPTTTEIPR 58 Query: 154 AC 155 AC Sbjct: 57 AC 52 >Lt_contig462 | | 1 to 16589 Length = 16589 Score = 31.2 bits (69), Expect = 3.3 Identities = 28/141 (19%), Positives = 58/141 (41%), Gaps = 14/141 (9%) Frame = -2 Query: 225 PELQSPKNSNMPETQKPPRWGPLGPAASNMPLLGDVGKPVADMVEGKMVKSDHTDGAVT- 283 P +P + + +++PP W P+ S M G+ + + G++ +++ + Sbjct: 2743 PPPLTPPHPSESSSRRPPTWEPVRTNTSAMVKNGNPKRSLDSGASGRLCRNEEAGESWAL 2564 Query: 284 -----------SNATTSSPSCTQELSWTPMGYI--VRQTVSSDSAAATENVTSMINLKKT 330 S A +SSP + +P+ R+ ++ + A TS IN+K Sbjct: 2563 CRMAPWCLTDLSTALSSSPPPPMQAPHSPLQRTRNEREIWAAVTVEALPLSTSRINVKAA 2384 Query: 331 TSSADAKNVSVTSEALSSNPS 351 + + A + VT ++ PS Sbjct: 2383 SRNGKAPQMGVTQSRRATVPS 2321 >Lt_contig4623 | | 1 to 8772 Length = 8772 Score = 30.8 bits (68), Expect = 4.3 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = +1 Query: 496 ERGRRSSQMKTPHNPLDSSAPLMKKGKQRE 525 E R S + +P NP D S+PL++K K++E Sbjct: 1210 EMCRESDRWHSPRNPPDPSSPLLQKEKEKE 1299 >Lt_contig312 | | 1 to 4357 Length = 4357 Score = 30.8 bits (68), Expect = 4.3 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 5/72 (6%) Frame = +2 Query: 468 ASHAKPSSRPVVFSVGAVPVLSKDASSSERGRRSSQMKTPHNPLDSSAPLMK-----KGK 522 A H + +RP++ P L K S RGRR ++ P+N + ++ GK Sbjct: 929 AMHRRTKARPLIREGN--PTLVKGNVSP*RGRRGDDVRQPNNGRHTKKAAVQIVRGGGGK 1102 Query: 523 QREIPKAKKPTS 534 +RE+P+ T+ Sbjct: 1103RRELPRCSAATT 1138 >Lt_contig5958 | | 1 to 21929 Length = 21929 Score = 30.4 bits (67), Expect = 5.7 Identities = 20/84 (23%), Positives = 39/84 (46%) Frame = -3 Query: 562 SDDSQDVESGASNQTPSQDNPTGPEKTEESVSSTPVVEGESEEPAGTEFQRDPEACQPAP 621 +DD +DVE ++ ++ E+TE + T E E ++ + D +PA Sbjct: 2742 ADDQEDVEEFDFDEDGDREGLAAAEQTEAKPTETDAYEDEESHRDTSDDENDIGEDEPA- 2566 Query: 622 DSATFPKIHSRRFRDYCSQMLSKE 645 D+ + SR+ +D +++ KE Sbjct: 2565 DTPQDTRRRSRKNKDELTELEEKE 2494 >Lt_contig2946 | | 1 to 1917 Length = 1917 Score = 30.0 bits (66), Expect = 7.4 Identities = 19/70 (27%), Positives = 28/70 (40%) Frame = +2 Query: 467 HASHAKPSSRPVVFSVGAVPVLSKDASSSERGRRSSQMKTPHNPLDSSAPLMKKGKQREI 526 H + K +RP + P + R +R S PH + K KQR I Sbjct: 74 HPNRHKTRTRPRNLHLRDTPPIPPPCGRRRRQQRPSTNPPPH---PHTRKRYKPSKQRPI 244 Query: 527 PKAKKPTSLK 536 P+ K PT ++ Sbjct: 245 PRRKAPTGMR 274 >Lt_contig426 | | 1 to 12442 Length = 12442 Score = 30.0 bits (66), Expect = 7.4 Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Frame = +1 Query: 282 VTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVT-SMINLKKTTSSADAKNVS 340 + +NA TS + + +L TP+ + ++ +S +A+ + +VT S +N T++ S Sbjct: 7198 IRANAQTSHTAGSLKLEQTPLPMVTPRSEASSAASPSPSVTSSTVNTPAATTTEPHHLPS 7377 Query: 341 VTSEALSSNPSYN 353 EAL++ S N Sbjct: 7378 TYGEALNTVSSRN 7416 >Lt_contig1293 | | 1 to 3010 Length = 3010 Score = 29.6 bits (65), Expect = 9.7 Identities = 21/82 (25%), Positives = 30/82 (36%) Frame = -2 Query: 90 PFAYPTYTLESAQSVCSVPTLQYDYSQARCHPGFRTAKPRHEHVCPPPQEAKGVFKKKPS 149 P P L+ + +PTLQ+ RC A P H P Q + G +++ S Sbjct: 1473 PPPLPPSPLQRCTTPSHLPTLQHTLRAHRCAQAVAFATPPHTAHSSPQQHSHG-HREQQS 1297 Query: 150 DERRACEEQKSSSRRADNAVPC 171 C + RR V C Sbjct: 1296 PPPPQCRRAPGAPRRCRRWVHC 1231 >Lt_contig1282 | | 1 to 5615 Length = 5615 Score = 29.6 bits (65), Expect = 9.7 Identities = 37/143 (25%), Positives = 57/143 (39%), Gaps = 4/143 (2%) Frame = +3 Query: 229 SPKNSNMPETQKPPRWGPLGPAASNMPLLGDVGKPVADMVEGKMVKSDHTDGAVTSNATT 288 +PK ++ E + R G + P+A V K + +V + GA + ++ Sbjct: 945 APKKTSFAELMRQHREGLVPPSAQPPVKATKVVKRLKATESTALVVAHTAAGAEPTASSL 1124 Query: 289 SSPSCTQELSWTPMGYIVRQTVSSDSA----AATENVTSMINLKKTTSSADAKNVSVTSE 344 S T I T ++ SA A T + ++ KTT+SA AK TS Sbjct: 1125 SEVETTAREEVRRPARITPTTEAASSATPSAAGTVHQAAVRKRIKTTNSASAKRTQDTSA 1304 Query: 345 ALSSNPSYNREKRVYPAPKAKAS 367 A S+ + RV K KAS Sbjct: 1305 AASAAATPTHVTRV----KGKAS 1361 >Lt_contig6682 | | 1 to 4504 Length = 4504 Score = 29.6 bits (65), Expect = 9.7 Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 5/100 (5%) Frame = -2 Query: 77 FPAQYVSSEIALHPFAYPTYTLESA-----QSVCSVPTLQYDYSQARCHPGFRTAKPRHE 131 +P++ +S+ L P + T E+ ++ CS T D + RC R+++ R Sbjct: 639 YPSE*LSATRHLFPVSCATPGSEAEDQKTRETSCSAATQASDLHRFRCRTSGRSSRSRRS 460 Query: 132 HVCPPPQEAKGVFKKKPSDERRACEEQKSSSRRADNAVPC 171 H CP + C +++ RR PC Sbjct: 459 HRCPASRGG-----------TCGCRASRAAGRRGVRRNPC 373 >Lt_contig429 | | 1 to 15886 Length = 15886 Score = 29.6 bits (65), Expect = 9.7 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = +2 Query: 87 ALHPFAYPTYTLESAQSVCSVPTLQYDYSQARCHPGFRTAKP 128 A HPF+ P L + +C+V S CHP F +P Sbjct: 2084 ACHPFSLPCAFLRHGEMICAVLWQSMLPSPTICHPRFCARRP 2209 Database: L.tarentolae/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 31,598,840 Number of sequences in database: 7267 Lambda K H 0.311 0.126 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,165,969 Number of Sequences: 7267 Number of extensions: 635294 Number of successful extensions: 3845 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 1249 Number of HSP's successfully gapped in prelim test: 341 Number of HSP's that attempted gapping in prelim test: 2347 Number of HSP's gapped (non-prelim): 2196 length of query: 858 length of database: 10,532,946 effective HSP length: 108 effective length of query: 750 effective length of database: 9,748,110 effective search space: 7311082500 effective search space used: 7311082500 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 65 (29.6 bits)