TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000106_1.0 # Protein # SECIS binding protein 2 (SBP2) # Mus musculus # Complete (858 letters) Database: L.donovani_BPK282A1/genome.fa 36 sequences; 32,444,998 total letters Searching....................................done Score E Sequences producing significant alignments: (bits) Value contig_31 38 0.030 contig_06 35 0.20 contig_25 34 0.57 contig_35 33 0.97 contig_27 33 1.3 contig_15 33 1.3 contig_20 32 1.7 contig_14 32 2.2 contig_34 31 4.8 contig_26 31 4.8 contig_05 31 4.8 contig_36 30 8.2 >contig_31 Length = 1531288 Score = 38.1 bits (87), Expect = 0.030 Identities = 37/147 (25%), Positives = 64/147 (43%) Frame = -2 Query: 211 STSKPEFEFSRLDFPELQSPKNSNMPETQKPPRWGPLGPAASNMPLLGDVGKPVADMVEG 270 +T+KP F +R D S ++ + Q+P R G + P A + V A++V Sbjct: 1128210 TTAKPLFHVNRSDTSICTSNASTRIATVQQPHRMGQIAPIAKLLNAAAAVN--TAEVVR- 1128040 Query: 271 KMVKSDHTDGAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKT 330 + SD V+ + TT + LS + + S + AA NV N ++ Sbjct: 1128039 --LGSDDVKAGVSPSPTTDANLREVGLSSAFLDIVAASRPLSPARAA--NVADSHNAPRS 1127872 Query: 331 TSSADAKNVSVTSEALSSNPSYNREKR 357 SS+D +N S+ + S+P+ + R Sbjct: 1127871 RSSSDNRN-QCESDGMGSSPTEMEQSR 1127794 >contig_06 Length = 529559 Score = 35.4 bits (80), Expect = 0.20 Identities = 37/129 (28%), Positives = 49/129 (37%), Gaps = 10/129 (7%) Frame = +3 Query: 46 GCAATYYPFVQEPPAAEQKMYPEDMAFGAPTF--PA----QYVSSEIALHPFAYP-TYTL 98 GC A VQ P A K +P PTF P+ Y +I +H +P + T+ Sbjct: 414468 GCVAAR*CSVQSAPRARLKSFPASRPDPLPTFLLPSLCRHTYGCLQIRVHTCIHPVSSTI 414647 Query: 99 ESAQSVCSVPTLQYDYSQARCHPGFRTAKPRHEHVC---PPPQEAKGVFKKKPSDERRAC 155 + SVC+ P + RC T P C P A F P R AC Sbjct: 414648 SLSASVCTPPRIS---RTCRCRMHTHTQTPIEIVACLCSLPCARAPFGFDCLPCLSRSAC 414818 Query: 156 EEQKSSSRR 164 Q ++RR Sbjct: 414819 SSQHITARR 414845 >contig_25 Length = 897883 Score = 33.9 bits (76), Expect = 0.57 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%) Frame = +2 Query: 132 HVCPPPQEAKGVFKKKPSDERRACE---EQKSSSRRADNAVPCEARPARG 178 H C PP+ + F + R + E +K+ RRA A P PARG Sbjct: 632267 HTCSPPRRSGARFPSRTGSSRESAEGSASEKTEWRRAARASPLSPHPARG 632416 >contig_35 Length = 2113966 Score = 33.1 bits (74), Expect = 0.97 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 7/61 (11%) Frame = +1 Query: 121 PGFRTAKPRHEHVCPPP-------QEAKGVFKKKPSDERRACEEQKSSSRRADNAVPCEA 173 PG R +PRH VC PP A V ++ +RAC ++ + D A CE Sbjct: 362281 PGLRERQPRHGRVCCPPVCPPRHRGTAGAVLLQEHGLVQRACRHAVAAPQGQDEARGCEE 362460 Query: 174 R 174 R Sbjct: 362461 R 362463 >contig_27 Length = 1024085 Score = 32.7 bits (73), Expect = 1.3 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Frame = -3 Query: 126 AKPRHEHVCPPPQEAKGVFKKKPSDERRACEEQKSSSRRAD-NAVPCEARPAR 177 A+PRHEH P + V + P+ RR K + D A PCE RP R Sbjct: 654222 ARPRHEHQPSHPHPPRRVGRGGPTPLRRPRGSTKRRALAGDGGAEPCEWRPLR 654064 Score = 30.4 bits (67), Expect = 6.3 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%) Frame = +3 Query: 126 AKPR-HEHVC---PPPQEAKGVFKKKPSDERRACEEQKSSSRRADNAVPCEARPAR 177 A+PR H VC PPP A VF P SSRRA + CE+ AR Sbjct: 273828 ARPRFHRTVCAAPPPPLRATQVFPVSPQQRTPRHVSTWRSSRRARQSPGCESDCAR 273995 >contig_15 Length = 618357 Score = 32.7 bits (73), Expect = 1.3 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 6/103 (5%) Frame = +1 Query: 428 HSKQQTQNEFKTSGKKSQVPVQLDLGGMLAALEKXXXXXHASHAKP----SSRPVVFSVG 483 H +QQ Q+ T+ +P LD+ A ++ A+ +P SSRP V + Sbjct: 199534 HQRQQQQHIDNTA-----LPSALDVVLPRALTQRAPSLRRAAKNQPLSPSSSRPSVPAAA 199698 Query: 484 AVPVLSKDASSSE--RGRRSSQMKTPHNPLDSSAPLMKKGKQR 524 P+LSK S E R SS PLD +AP ++ +R Sbjct: 199699 HPPLLSKSTSQPETQHTRSSSPSLRSPTPLDLTAPPKRRPARR 199827 Score = 32.7 bits (73), Expect = 1.3 Identities = 22/58 (37%), Positives = 29/58 (50%) Frame = -3 Query: 199 PDRKSRILAKSASTSKPEFEFSRLDFPELQSPKNSNMPETQKPPRWGPLGPAASNMPL 256 P R+ A + + S+P RLDF E SN+ +T +PP L PAAS PL Sbjct: 102934 PLRRPEFAAVAVACSRPRRRRRRLDFAE------SNV*KTARPPPLRRLLPAASKPPL 102779 >contig_20 Length = 752621 Score = 32.3 bits (72), Expect = 1.7 Identities = 26/97 (26%), Positives = 35/97 (36%) Frame = -3 Query: 59 PAAEQKMYPEDMAFGAPTFPAQYVSSEIALHPFAYPTYTLESAQSVCSVPTLQYDYSQAR 118 P +++K P+ APT+PA Y A HP + L+ + V A Sbjct: 384519 PPSKKKNQPQQQEEDAPTYPASYP----ATHPHSSEEGLLQKRRREARVRVCSTAQGSAL 384352 Query: 119 CHPGFRTAKPRHEHVCPPPQEAKGVFKKKPSDERRAC 155 HP F P C P + V P E AC Sbjct: 384351 SHPLF---SPSLRSACAPRRTRCWVETSLPLHELYAC 384250 >contig_14 Length = 645099 Score = 32.0 bits (71), Expect = 2.2 Identities = 35/145 (24%), Positives = 51/145 (35%), Gaps = 11/145 (7%) Frame = -3 Query: 35 WSESSETRVFPGCAATYYPFVQEPPAAEQKMYPEDMAFGAPTFPAQYVSSEIALHPFAYP 94 W S P CA+T P + A++ +YP P FP + + + Sbjct: 406084 WCLS*ADAFLPSCASTILPVHRFSQASKSGVYP-------PPFPRTHAE*CACVSSTSLS 405926 Query: 95 TYTLESAQSVCSVPTLQYDYSQAR----------CHPGFRTAKPRHEHVCPPPQEAKGVF 144 + T+ SVC T D S +R H R VCP + G Sbjct: 405925 SLTISFFASVCCSHT---DSSPSRLGCAPSPTPYTHANSSKCTRRVARVCPVKRRDTGAH 405755 Query: 145 KKKPSDER-RACEEQKSSSRRADNA 168 +P+ R A +E KS+ R A Sbjct: 405754 SWRPAGRRLHASKEGKSTLSRMQGA 405680 >contig_34 Length = 1750858 Score = 30.8 bits (68), Expect = 4.8 Identities = 14/28 (50%), Positives = 20/28 (71%) Frame = -1 Query: 680 LGLREVLKHLKLRKLKCIIISPNCEKTQ 707 +GLR+ L+HL +RKL+ + PN EK Q Sbjct: 1560697 IGLRQELQHLHVRKLRRVPKHPNVEKHQ 1560614 Score = 30.8 bits (68), Expect = 4.8 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 2/79 (2%) Frame = +2 Query: 94 PTYTLESAQSVCSVPTLQYDY-SQARCHPGFRTAKPRHEHVCPPP-QEAKGVFKKKPSDE 151 P+ T+ + C + Q + ARC G +H CP + + PS+ Sbjct: 822806 PSSTVSTRSRPCKAASHQTKQCAGARCQAGRSRGSGQHLPQCPSAIRRHSRWLRSGPSEA 822985 Query: 152 RRACEEQKSSSRRADNAVP 170 RRAC E + SSRRA P Sbjct: 822986 RRACAE-RFSSRRARAGCP 823039 >contig_26 Length = 1058259 Score = 30.8 bits (68), Expect = 4.8 Identities = 15/49 (30%), Positives = 26/49 (53%) Frame = +2 Query: 672 AKTKRRLVLGLREVLKHLKLRKLKCIIISPNCEKTQSKGGLDDTLHTII 720 A+T++R + G + L+HL +++CI S T S G D H ++ Sbjct: 242729 ARTEKRQLRGRLQHLRHLSWSQVQCITRSVATATTGSPAGCRDAAHKVV 242875 Score = 30.8 bits (68), Expect = 4.8 Identities = 23/94 (24%), Positives = 42/94 (44%) Frame = +3 Query: 281 AVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSSADAKNVS 340 A + ATT +P+ ++ L P +++ SS SA ++ S ++ + Sbjct: 799164 AAAATATTGTPAASRPLDALPSSLKLQRKASSSSAGSS------------ASGHESAAAA 799307 Query: 341 VTSEALSSNPSYNREKRVYPAPKAKASQGGELEQ 374 V EA +S+ + +PKA+ GG+ EQ Sbjct: 799308 VPPEAEASSRPSSCSAASSVSPKARVVPGGQSEQ 799409 >contig_05 Length = 452426 Score = 30.8 bits (68), Expect = 4.8 Identities = 35/124 (28%), Positives = 49/124 (39%) Frame = +1 Query: 213 SKPEFEFSRLDFPELQSPKNSNMPETQKPPRWGPLGPAASNMPLLGDVGKPVADMVEGKM 272 +K +E +PE K + +P+ PP P PAAS D G+ Sbjct: 344932 TKDVWETQMKMYPETSPEKEAQVPKLPPPP---PAAPAASATAKPEDAGE---------- 345072 Query: 273 VKSDHTDGAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTS 332 K D D A +S A S S + LS +P +T + AAA + N K T Sbjct: 345073 -KQDAPDTA-SSPAPPPSASPSSTLSPSPAAADASETAA--KAAAAPDAPQSHNAPKGTP 345240 Query: 333 SADA 336 S+ A Sbjct: 345241 SSPA 345252 >contig_36 Length = 2713248 Score = 30.0 bits (66), Expect = 8.2 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Frame = +3 Query: 83 SSEIALHPFAYPTYTLESAQSVCSVPTLQYDYSQARCHPGFRTAKP----RHEHVCPPPQ 138 +++ A+HP A P + L V +VPT+ ++ R HP A P + V P P Sbjct: 1559658 ATQKAVHPSAVPPHPLRGLSRVLAVPTVGWN---VRLHPCLGDADPPGPGKRVAVAPTPL 1559828 Query: 139 EA 140 +A Sbjct: 1559829 QA 1559834 Database: L.donovani_BPK282A1/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 32,444,998 Number of sequences in database: 36 Lambda K H 0.311 0.126 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,248,226 Number of Sequences: 36 Number of extensions: 704439 Number of successful extensions: 4650 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 19 Number of HSP's that attempted gapping in prelim test: 4077 Number of HSP's gapped (non-prelim): 1806 length of query: 858 length of database: 10,814,999 effective HSP length: 109 effective length of query: 749 effective length of database: 10,811,075 effective search space: 8097495175 effective search space used: 8097495175 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 65 (29.6 bits)