TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000106_1.0 # Protein # SECIS binding protein 2 (SBP2) #
Mus musculus # Complete
         (858 letters)

Database: I.multifiliis_strain_G5/genome.fa 
           2017 sequences; 48,799,969 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|340500671|gb|GL984354.1| Ichthyophthirius multifiliis unplace...    35   0.49 
gi|340499670|gb|GL984683.1| Ichthyophthirius multifiliis unplace...    32   4.2  
gi|340507904|gb|GL983342.1| Ichthyophthirius multifiliis unplace...    30   9.3  

>gi|340500671|gb|GL984354.1| Ichthyophthirius multifiliis unplaced
             genomic scaffold scaff_1120509251393, whole genome shotgun
             sequence
          Length = 34020

 Score = 34.7 bits (78), Expect = 0.49
 Identities = 21/80 (26%), Positives = 42/80 (52%)
 Frame = -1

Query: 681   GLREVLKHLKLRKLKCIIISPNCEKTQSKGGLDDTLHTIIDCACEQNIPFVFALNRKALG 740
             G+ EVLK L     + +I++ +C+       L+  ++   +C  E+N+P+ F  ++ ALG
Sbjct: 33201 GVNEVLKCLNKGVSELVILAADCDP------LEIVMNLPGECE-EKNVPYCFVSSKSALG 33043

Query: 741   RSLNKAVPVSIVGIFSYDGA 760
             R+     P+    I  ++G+
Sbjct: 33042 RACGIKRPIVAATIILHEGS 32983


>gi|340499670|gb|GL984683.1| Ichthyophthirius multifiliis unplaced
            genomic scaffold scaff_5255, whole genome shotgun
            sequence
          Length = 1277

 Score = 31.6 bits (70), Expect = 4.2
 Identities = 19/69 (27%), Positives = 37/69 (53%)
 Frame = +2

Query: 681  GLREVLKHLKLRKLKCIIISPNCEKTQSKGGLDDTLHTIIDCACEQNIPFVFALNRKALG 740
            G+ EVLK L     + +I++ +C+       L+  ++   +C  E+N+P+ F  ++ ALG
Sbjct: 1073 GVNEVLKCLNKGVSELVILAADCDP------LEIVMNLPGECE-EKNVPYCFVSSKSALG 1231

Query: 741  RSLNKAVPV 749
            R+     P+
Sbjct: 1232 RACGIKRPI 1258


>gi|340507904|gb|GL983342.1| Ichthyophthirius multifiliis unplaced
           genomic scaffold scaff_1120509249881, whole genome
           shotgun sequence
          Length = 5146

 Score = 30.4 bits (67), Expect = 9.3
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = -1

Query: 626 FPKIHS--RRFRDYCSQMLSK-EVDACVTGLLKELVRFQDRMYQKDPVKAKTKRRLV 679
           F  +H   +  R Y     SK  +    T LLK  +  +D+ Y+KDP   K  +RL+
Sbjct: 484 FKHVHDDGKNSRIYVQNYFSKITIGITDTNLLKAFISVEDKYYEKDPYFTKALKRLM 314


  Database: I.multifiliis_strain_G5/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 48,799,969
  Number of sequences in database:  2017
  
Lambda     K      H
   0.311    0.126    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,119,085
Number of Sequences: 2017
Number of extensions: 195031
Number of successful extensions: 309
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 290
Number of HSP's gapped (non-prelim): 25
length of query: 858
length of database: 16,266,656
effective HSP length: 112
effective length of query: 746
effective length of database: 16,040,752
effective search space: 11966400992
effective search space used: 11966400992
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 67 (30.4 bits)