TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000106_1.0 # Protein # SECIS binding protein 2 (SBP2) # Mus musculus # Complete (858 letters) Database: D.fasciculatum/genome.fa 25 sequences; 31,019,208 total letters Searching.........................done Score E Sequences producing significant alignments: (bits) Value gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced ... 96 9e-20 gi|328870360|gb|GL883017.1| Dictyostelium fasciculatum unplaced ... 34 0.42 gi|328867405|gb|GL883025.1| Dictyostelium fasciculatum unplaced ... 34 0.54 gi|328866594|gb|GL883026.1| Dictyostelium fasciculatum unplaced ... 33 0.93 gi|328864870|gb|GL883029.1| Dictyostelium fasciculatum unplaced ... 32 2.1 gi|328875389|gb|GL883007.1| Dictyostelium fasciculatum unplaced ... 32 2.1 gi|328876102|gb|GL883006.1| Dictyostelium fasciculatum unplaced ... 32 2.1 gi|328871378|gb|GL883013.1| Dictyostelium fasciculatum unplaced ... 31 3.5 gi|328870595|gb|GL883016.1| Dictyostelium fasciculatum unplaced ... 31 4.6 gi|328874319|gb|GL883008.1| Dictyostelium fasciculatum unplaced ... 30 6.0 >gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-F-a-25c12.r2-5, whole genome shotgun sequence Length = 4166812 Score = 96.3 bits (238), Expect = 9e-20 Identities = 78/324 (24%), Positives = 144/324 (44%), Gaps = 32/324 (9%) Frame = -1 Query: 488 LSKDASSSERGRRSSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKIIL------- 540 +S D S ++ ++ ++K P N L R+ PK KKPT+LK+ IL Sbjct: 3053881 ISIDESIQQKIIQNKKLKNPKNKLFVV---------RDTPKIKKPTTLKRNILLYKETKE 3053729 Query: 541 ---------------KXXXXXXXXXXXXSAVSLTVASDDSQDVESGASNQ---------T 576 S++ + D + G S Q T Sbjct: 3053728 KLIEQQKQDQQEQEINQPVVVVVDQEPTSSIPFPPPPLPTNDNDHGCSAQPNHLIEKLET 3053549 Query: 577 PSQDNPTGPEKTEESVSSTPVVEGESEEPAGTEFQRDPEACQPAPDSATFPKIHSRRFR- 635 S +N ++ E+ T +V GE E+ EF+++ + P + F Sbjct: 3053548 ISLENQNPEQQQEDVNHQTSIVNGEEEDKFLMEFKQEYG*IFVYYYKQSNPSTNYIYFIF 3053369 Query: 636 DYCSQMLSKEVDACVTGLLKELVRFQDRMYQKDPVKAKTKRRLVLGLREVLKHLKLRKLK 695 Y +Q++++E++ + + QD + +P K K+R + GLRE+ + + K+ Sbjct: 3053368 SYINQIINQEINEKAREFIIRIKTMQDNYTKNNP--KKPKKRFITGLREIERDVDCDKIS 3053195 Query: 696 CIIISPNCEKTQSKGGLDDTLHTIIDCACEQNIPFVFALNRKALGRSLNKAVPVSIVGIF 755 C+II+PN + +GGL+ + +II ++ I + FAL+++ +GR L+ + +S G+ Sbjct: 3053194 CVIIAPNIDDVGCEGGLNPMIQSIIRMCRKKQILYTFALSKRIIGRLLHVPIKISAFGVL 3053015 Query: 756 SYDGAQDQFHKMVELTMAARQAYK 779 S+DGA D + ++ LT AR ++ Sbjct: 3053014 SHDGAHDLYRQLDLLTQRARTTFR 3052943 Score = 30.8 bits (68), Expect = 4.6 Identities = 23/96 (23%), Positives = 39/96 (40%) Frame = -1 Query: 269 EGKMVKSDHTDGAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLK 328 + + + T G+ TSN+ ++ + S T+ + S +T + TS + Sbjct: 1069828 QATQISMNFTRGSGTSNSNSNQSQSSSSSS--------SSTIPTTSTTSTTSTTSTSSSS 1069673 Query: 329 KTTSSADAKNVSVTSEALSSNPSYNREKRVYPAPKA 364 +TSS A N+ + S R PAPKA Sbjct: 1069672 SSTSSIPAVNMDEEFPVMPGLQSTTRYPARAPAPKA 1069565 >gi|328870360|gb|GL883017.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-G-b-190b03.r1-5, whole genome shotgun sequence Length = 548609 Score = 34.3 bits (77), Expect = 0.42 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Frame = -1 Query: 556 VSLTVASDDSQDVESGASNQTPSQDNPT-GPEKTEESVSSTPVVEGESEEPAGTEFQRDP 614 ++ T SD ++ S +SN Q+ P G EK + S+T GE + E Q+ P Sbjct: 32936 IATTSTSDHNEPTSSSSSNSNDIQEPPAGGMEKLSINSSTTTTTTGEQQNEQNKELQKTP 32757 Query: 615 EACQPAPDSAT 625 +P + + Sbjct: 32756 TVEHTSPTTTS 32724 >gi|328867405|gb|GL883025.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_EU5ZYIE01EUG8B-5, whole genome shotgun sequence Length = 941765 Score = 33.9 bits (76), Expect = 0.54 Identities = 27/98 (27%), Positives = 43/98 (43%) Frame = +1 Query: 265 ADMVEGKMVKSDHTDGAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSM 324 A+M++ + S + S+ + S S + LS T I + + T TS Sbjct: 822535 ANMIKQTFIPSTKLMAKILSSPLSPSLSLSSPLSSTTT-IIKLYDNNYCNIRTTTTTTST 822711 Query: 325 INLKKTTSSADAKNVSVTSEALSSNPSYNREKRVYPAP 362 LKKTT ++ S +S + S P YN ++ V AP Sbjct: 822712 TCLKKTTYRSNCLYFSTSSSSSSQPPKYNNQEHVVSAP 822825 >gi|328866594|gb|GL883026.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_EU5ZYIE02H8LDV-5, whole genome shotgun sequence Length = 1919465 Score = 33.1 bits (74), Expect = 0.93 Identities = 18/59 (30%), Positives = 26/59 (44%) Frame = -2 Query: 564 DSQDVESGASNQTPSQDNPTGPEKTEESVSSTPVVEGESEEPAGTEFQRDPEACQPAPD 622 + + E + Q Q PT P + E STP V+ +E TE Q+ QP P+ Sbjct: 343489 EQEKQEQPQAQQPEQQQQPTEPVQPTEPEQSTPQVQPTAEPVQPTEQQQPAPQVQPTPE 343313 >gi|328864870|gb|GL883029.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_EUAJFUG02HR96I-5, whole genome shotgun sequence Length = 3408800 Score = 32.0 bits (71), Expect = 2.1 Identities = 37/163 (22%), Positives = 69/163 (42%), Gaps = 4/163 (2%) Frame = +2 Query: 209 SASTSKPEFEFSRLDFPELQSPKNSNMPETQ---KPPRWGPLGPAASNMPLLGDVGKPVA 265 ++S+SKP + D ++ K S++PE + K R P + P + P + Sbjct: 1274981 TSSSSKPSSQSDNSDVATIKKQKMSDLPECEYGKKCFRKNPQHFLEYSHPWKNE---PTS 1275151 Query: 266 DMVEGKMVKSDHTDGAVTSN-ATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSM 324 S T TS+ A++ S + T ++ P+ T +++ + +S Sbjct: 1275152 SSSSDTPANSTKTSTTPTSSPASSQSSATTTSVTAQPIATKTNNTNQNNNNNNNNSSSSS 1275331 Query: 325 INLKKTTSSADAKNVSVTSEALSSNPSYNREKRVYPAPKAKAS 367 +TS+A K S ++ +L S+ S + V APK +S Sbjct: 1275332 ATTSSSTSTAAPKVTSSSTTSLPSSSSSSSSSTV--APKVASS 1275454 >gi|328875389|gb|GL883007.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-G-p-12c09.r1-3, whole genome shotgun sequence Length = 1770755 Score = 32.0 bits (71), Expect = 2.1 Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 1/149 (0%) Frame = -3 Query: 473 PSSRPVVFSVGAVPVLSKDASSSERGRRSSQMKTPH-NPLDSSAPLMKKGKQREIPKAKK 531 P RP + + +P + + + +T +P+ ++ P M + P Sbjct: 295470 PRDRPSIDEIIELPFIQQYLNDYNHNTADMSNQTAQKSPISNNIP-MSMMMSKSPPAMSS 295294 Query: 532 PTSLKKIILKXXXXXXXXXXXXSAVSLTVASDDSQDVESGASNQTPSQDNPTGPEKTEES 591 P S K +K +A+S + +TPS+ NPT P ++ S Sbjct: 295293 PISSSKTPVKTTTTSSSSSSGRTAMSAPTTP---------INKKTPSKVNPTTPTRSASS 295141 Query: 592 VSSTPVVEGESEEPAGTEFQRDPEACQPA 620 S + S + + F R P +P+ Sbjct: 295140 SSISSSTSSSSSSSSSSGFVRKPPVPKPS 295054 >gi|328876102|gb|GL883006.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-G-b-205a01.r1-3, whole genome shotgun sequence Length = 2485436 Score = 32.0 bits (71), Expect = 2.1 Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 6/119 (5%) Frame = -2 Query: 59 PAAEQKMYPEDMAFGAPTFPAQYVSS-EIALHP-FAYPTYTLESAQSVCSVPTLQYDYSQ 116 P +Q YP + P P Q+ + ++ P A P Y + Q V P Q + Q Sbjct: 1360684 PQQQQYAYPPQQGYAQP--PPQHANQCQVTGCPNLADPGYNI-CRQHVLPPPQPQVNRCQ 1360514 Query: 117 ARCHPGFRTAKPRH----EHVCPPPQEAKGVFKKKPSDERRACEEQKSSSRRADNAVPC 171 PG A+P + +H+ PPPQ V ++ D+ + +++ + RA C Sbjct: 1360513 VTGCPGL--AEPGYNICRQHISPPPQVMMTVETQEVKDKNKNRQKKDDRNERAQECGKC 1360343 Score = 30.4 bits (67), Expect = 6.0 Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 2/88 (2%) Frame = +2 Query: 52 YPFVQE--PPAAEQKMYPEDMAFGAPTFPAQYVSSEIALHPFAYPTYTLESAQSVCSVPT 109 YP VQ PP Q+ + A GA +P QY ++ PT Q P Sbjct: 138290 YPTVQPVTPPQYPQQQQQQPTAAGA--YPPQYPPTQKPA-----PTQYSPPPQQQQPTPQ 138448 Query: 110 LQYDYSQARCHPGFRTAKPRHEHVCPPP 137 Y Y Q P A P + + PPP Sbjct: 138449 YPYQYPQQPQQPQQPQAYPTVQPIAPPP 138532 >gi|328871378|gb|GL883013.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_ET2XIPL01CNAVH-3, whole genome shotgun sequence Length = 1908399 Score = 31.2 bits (69), Expect = 3.5 Identities = 21/73 (28%), Positives = 37/73 (50%) Frame = -1 Query: 677 RLVLGLREVLKHLKLRKLKCIIISPNCEKTQSKGGLDDTLHTIIDCACEQNIPFVFALNR 736 +L G EV K + + ++++ + E L+ LH + C ++NIP+VF ++ Sbjct: 583779 QLKKGANEVTKSVSRSVAEFVVLAADAEP------LEIVLHIPLLCE-DKNIPYVFVPSK 583621 Query: 737 KALGRSLNKAVPV 749 LGR N + PV Sbjct: 583620 AELGRVCNVSRPV 583582 >gi|328870595|gb|GL883016.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-G-b-143d02.r1-5, whole genome shotgun sequence Length = 656888 Score = 30.8 bits (68), Expect = 4.6 Identities = 20/68 (29%), Positives = 28/68 (41%) Frame = -1 Query: 562 SDDSQDVESGASNQTPSQDNPTGPEKTEESVSSTPVVEGESEEPAGTEFQRDPEACQPAP 621 SDDS+ ES P D P + +E + P E E E + + DPE P Sbjct: 68648 SDDSEAEESELDEADPEADEPEADPELDEP-EADPEAEPEPEADPEADPEPDPEP-DPVA 68475 Query: 622 DSATFPKI 629 D P++ Sbjct: 68474 DEVELPEL 68451 >gi|328874319|gb|GL883008.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-G-o-80e12.f1-5, whole genome shotgun sequence Length = 2750715 Score = 30.4 bits (67), Expect = 6.0 Identities = 24/83 (28%), Positives = 42/83 (50%) Frame = -2 Query: 274 KSDHTDGAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSS 333 +S+HT V S++T++SPS LS P T +S S A+ N + + TTSS Sbjct: 2423480 QSNHTTREVLSSSTSASPSSC--LSDNP-------TPNSSSVASAHNYGT--STTSTTSS 2423334 Query: 334 ADAKNVSVTSEALSSNPSYNREK 356 + + + + + AL+ R++ Sbjct: 2423333 SSSSSAAAAAAALAKKQKKKRQQ 2423265 Database: D.fasciculatum/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 31,019,208 Number of sequences in database: 25 Lambda K H 0.311 0.126 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,346,582 Number of Sequences: 25 Number of extensions: 285307 Number of successful extensions: 1332 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 15 Number of HSP's that attempted gapping in prelim test: 1021 Number of HSP's gapped (non-prelim): 850 length of query: 858 length of database: 10,339,736 effective HSP length: 109 effective length of query: 749 effective length of database: 10,337,011 effective search space: 7742421239 effective search space used: 7742421239 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 65 (29.6 bits)