TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000106_1.0 # Protein # SECIS binding protein 2 (SBP2) # Mus musculus # Complete (858 letters) Database: D.discoideum_AX4/genome.fa 6 sequences; 33,943,072 total letters Searching......done Score E Sequences producing significant alignments: (bits) Value gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromoso... 90 7e-18 gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromoso... 38 0.041 gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromoso... 37 0.054 gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromoso... 35 0.20 gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromoso... 33 1.3 gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromos... 31 3.9 >gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole genome shotgun sequence Length = 6357299 Score = 90.1 bits (222), Expect = 7e-18 Identities = 48/183 (26%), Positives = 100/183 (54%), Gaps = 1/183 (0%) Frame = +3 Query: 611 QRDPEACQPAPDSATFPKIHSRRFRDYCSQML-SKEVDACVTGLLKELVRFQDRMYQKDP 669 Q+ + QP ++ + F++Y +Q+L + +++ L+ L +FQ++ Y +P Sbjct: 1935195 QQQQQQQQPQVQQQVQQQVQQQNFQEYINQILPNNDINNTCKELIGILRKFQEKSYLNNP 1935374 Query: 670 VKAKTKRRLVLGLREVLKHLKLRKLKCIIISPNCEKTQSKGGLDDTLHTIIDCACEQNIP 729 K K+R + GLRE LK ++ K+ C+II+P E+ G L+ + I+ ++I Sbjct: 1935375 --DKPKKRYICGLRETLKFVESNKVSCVIITPTIEEN---GALNKIVEDIVRMCKSRSIL 1935539 Query: 730 FVFALNRKALGRSLNKAVPVSIVGIFSYDGAQDQFHKMVELTMAARQAYKTMLETMRQEQ 789 + FAL+ ++LG+ + K + ++++GI YDGA + + K+ T +R + + ++ ++ Sbjct: 1935540 YTFALSSRSLGKLIGKTIKITVLGILDYDGANEIYQKLFTQTKQSRDEFFKIQNILKLKE 1935719 Query: 790 AGE 792 E Sbjct: 1935720 KEE 1935728 Score = 32.0 bits (71), Expect = 2.3 Identities = 20/69 (28%), Positives = 40/69 (57%) Frame = +3 Query: 283 TSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSSADAKNVSVT 342 TSNATT++ + TQ + T + SS S++++ + +S + ++SS+ + + S + Sbjct: 4862826 TSNATTTTTNTTQTSTSTTTTTSWLSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 4863005 Query: 343 SEALSSNPS 351 S + SS+ S Sbjct: 4863006 SSSSSSSSS 4863032 Score = 30.8 bits (68), Expect = 5.0 Identities = 36/172 (20%), Positives = 70/172 (40%), Gaps = 2/172 (1%) Frame = +2 Query: 203 SRILAKSASTSKPEFEFSRLDFPELQSPKNSNMPETQKPPRWGPLGPAASNMPLLGDVGK 262 SR+ + S+ T + +RL ++ +S+ P + +S+ P + Sbjct: 5812304 SRVASTSSLTPQKSLTPNRLSGTFPRTTTSSSTPTSSPLRSTSSTTTTSSSTP--NRLSS 5812477 Query: 263 PVADMVEGKMVKSDHTDGAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVT 322 + +V + + + T +AT P+ T +LS T T SS S+++T N T Sbjct: 5812478 TINKVVSSSPSSTSSSSSSPTRSATPLPPTSTSKLSST--------TSSSSSSSSTPNKT 5812633 Query: 323 SMINLKKTTSSADAKNVSVTSEALSSNPSYNREKRVYP--APKAKASQGGEL 372 + S+ S+ + ++ PS + P +P K+S G E+ Sbjct: 5812634 PL-------STRSTSTPSLRTPVTNTTPSKSHSSFSTPTSSPSMKSSPGKEM 5812768 >gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromosome 6, whole genome shotgun sequence Length = 3602379 Score = 37.7 bits (86), Expect = 0.041 Identities = 47/186 (25%), Positives = 68/186 (36%), Gaps = 23/186 (12%) Frame = -3 Query: 198 RPDRKSRILAKSAST--SKPEFEFSRLDFPELQSPKNSNMPETQKPPRWGPLGPAASNMP 255 +P KS+ KS T SKP S+ + +S S T+ P P + P Sbjct: 3082348 KPTTKSKSTTKSKPTTNSKPTTTKSK-STTKSKSTTKSKPTTTKSKPTTTKSKPTTKSKP 3082172 Query: 256 LLGDV----GKPVADMVEGKMVKSDHTDGAVTSNATTSSPSCTQELS----------WTP 301 KP + + T A TSNATTS+ S T S W P Sbjct: 3082171 TTKSKPTTKSKPTTTKSKPTTTSNATTSNATTSNATTSNASTTSNASSNASRWSTTKWPP 3081992 Query: 302 -MGYIVRQTVSSDSAAAT-----ENVTSMINLKKTTSSADAKNVSVT-SEALSSNPSYNR 354 + + T S T ++ T+ K TT S K+ S T S++ S P+ ++ Sbjct: 3081991 SISFTNAPTTKSKPTTTTTTTKSKSTTTTTKSKSTTKSKSTKSKSTTKSKSTKSKPTKSK 3081812 Query: 355 EKRVYP 360 P Sbjct: 3081811 PTNSKP 3081794 >gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromosome 4, whole genome shotgun sequence Length = 5450249 Score = 37.4 bits (85), Expect = 0.054 Identities = 22/73 (30%), Positives = 41/73 (56%) Frame = -1 Query: 281 AVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSSADAKNVS 340 ++ SNA +SSP+ + +P+ ++ Q + S S++++ N + I T SS N + Sbjct: 2739704 SLLSNAQSSSPTTS-----SPLSNVINQNIISSSSSSSSN-ANQITSTTTPSSTTNSNNN 2739543 Query: 341 VTSEALSSNPSYN 353 TS + S+NP+ N Sbjct: 2739542 TTSSSSSTNPNPN 2739504 Score = 36.2 bits (82), Expect = 0.12 Identities = 66/377 (17%), Positives = 129/377 (34%), Gaps = 13/377 (3%) Frame = +3 Query: 265 ADMVEGKMVKSDHTDGAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSM 324 A + + ++ T+ S+ +P+ + E TP Q+ +++ A E+ + Sbjct: 2369541 APSTDSQQAPTESTEAPTQSSVEQPAPTESTE---TPA-----QSSAAEQQAPAESTEAP 2369696 Query: 325 INLKKTTSSADAKNVSVTSEALSSNPSYNREKRVYPAPKAKASQGGELEQXXXXXXXXXX 384 A A++ +++ ++ E PA + A Q E Sbjct: 2369697 AQSSAAEQQAPAESTEAPAQSSAAEQQAPAESTEAPAQSSAAEQQAPAESTEA------- 2369855 Query: 385 XXXXXPSYEVLTVQEPPRIEDAEEFPNLSVASERRHRGQSPKL--------HSKQQTQNE 436 P+ Q+ P ++ E P S A+E++ +S + S + + Sbjct: 2369856 -----PAQSSAAEQQAPA--ESTEAPAQSSAAEQQAPAESNEAPAQSSAAEQSAESNEAP 2370014 Query: 437 FKTSGKKSQVPVQLDLGGMLAALEKXXXXXHASHAKPSS---RPVVFSVGAVPVLSKDAS 493 ++S + Q P + + ++ + + + A+ SS +P S A A Sbjct: 2370015 AQSSAAEQQAPAESNEAPAQSSAAEQPAESNEAPAQSSSTVEQPPAESSAAPEATEVPAE 2370194 Query: 494 SSERGRRSSQMKTPHNPLDSSAPLMKKGKQREIP--KAKKPTSLKKIILKXXXXXXXXXX 551 S+E+ SS + DS P G++++ P ++PT Sbjct: 2370195 SAEQPTESSNAEQQQT--DSQQPTQSSGEEQQQPTDSQQQPT------------------ 2370314 Query: 552 XXSAVSLTVASDDSQDVESGASNQTPSQDNPTGPEKTEESVSSTPVVEGESEEPAGTEFQ 611 D Q QT NP T+ S P +E+P T+ Q Sbjct: 2370315 -----------DSQQQTTDSQQQQTSESSNP-----TQSSGEQQPTESSNAEQP--TDSQ 2370440 Query: 612 RDPEACQPAPDSATFPK 628 + P AP++ P+ Sbjct: 2370441 QPPAESSSAPEATESPE 2370491 Score = 32.7 bits (73), Expect = 1.3 Identities = 91/491 (18%), Positives = 177/491 (36%), Gaps = 50/491 (10%) Frame = +1 Query: 205 ILAKSASTSKPEFEFSRLDFPELQSPKNSNMPETQKPPRWGPLGPAASNMPLLGDVGKPV 264 I+ + S+S +F+++ + + N+N T+ +N P + K Sbjct: 1987819 IVYTNISSSSSDFDYNNSNSNNSNNNNNNNNSITENNT-----DKMINNQPSSTNSKKLK 1987983 Query: 265 ADMVEGKMVKSDHTDGA----VTSNATTSSPSCTQE--------------LSWTP----- 301 + ++ K +++ +GA T+ TT++ S T E S TP Sbjct: 1987984 TNEIDSKDTSNNNLNGADFKKTTTTTTTTTTSSTSEPIKSPNSSSSTNSSASTTPTVKKE 1988163 Query: 302 --MGYIVRQTVSSDSAAATENVTSMINLKKTTSSADAKNVSVTSEALSS----------- 348 + I + V SDS E+ +S N TTS+ +K++ E S Sbjct: 1988164 KLILKIPKLVVKSDSGTNKESNSS--NSSSTTSTPKSKDLEEKKEKEKSEKEKGEKLEKS 1988337 Query: 349 --NPSYNREKRVYPAPKAKASQGGELEQXXXXXXXXXXXXXXXPSYEVLT--VQEPPRIE 404 + + ++ A K + S+ E + + + T V++ ++E Sbjct: 1988338 EKSDKSEKTEKTEKAEKTEKSEKSEKSEKTDQLEKAEKLEKEEKTEKKKTEKVEKAGKVE 1988517 Query: 405 DAEEFPNLSVASERRHRGQSPKLHSKQQTQNEFKTSGKKSQVPVQLD---LGGMLAALEK 461 E+ + E+ + K K++ + + +S K P++ D +GG ++ Sbjct: 1988518 KKEKPKDKQTKQEKEKEKEKEKETEKEKEKKDKVSSKKDELQPIEEDKKKIGGKRKSIN- 1988694 Query: 462 XXXXXHASHAKPSSRPVVFSVGAVPVLSKDASSSERGRRSSQMKTPHNPLDSSAPL-MKK 520 SS+P F ++ + + + + N +D S KK Sbjct: 1988695 ------------SSKPE-FKSDSIDMDIDEPNPKSSSNYNDSDDDSENEIDKSDKRSQKK 1988835 Query: 521 GKQREIPKAKKPTSLKKIILKXXXXXXXXXXXXSAVSLTVASDDSQDV----ESGASNQT 576 K PK+ K ++ K S+ SL S S + S +S+ + Sbjct: 1988836 SKVESPPKSSKLSNGKD----KKSTTTTTTSTSSSSSLPSLSSSSSSLPLPSSSSSSSSS 1989003 Query: 577 PSQDNPTGPEKTEESVSSTPVVEGESEEPAGTEFQR--DPEACQPAPDSATFPKIHSRRF 634 S + + + S SST + + EEP Q+ P QP P P I+ Sbjct: 1989004 SSSSSSSSSSSSSSSSSSTTSTKIKKEEPPPPPPQQPPPPPPQQPPPPP---PPINPFSV 1989174 Query: 635 RDYCSQMLSKE 645 ++ +++ KE Sbjct: 1989175 SEHDKKIIEKE 1989207 Score = 31.2 bits (69), Expect = 3.9 Identities = 18/55 (32%), Positives = 27/55 (49%) Frame = +2 Query: 283 TSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSSADAK 337 T+++TTSS S T TP+ T SS + T T+ TTS++ +K Sbjct: 4301267 TTSSTTSSTSITTNFITTPIPTTTTTTSSSTTTTTTTTTTTTTTTTTTTSTSISK 4301431 Score = 30.4 bits (67), Expect = 6.6 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Frame = +2 Query: 278 TDGAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATEN-VTSMINLKKTTSSADA 336 T A T ATT++ + T + T T +++S AAT T+ N TT++A+ Sbjct: 4760738 TTTATTIPATTTATATTTTATTTTATATTNTTATTNSTAATTTAATTTANTTTTTTTANT 4760917 Query: 337 KNVSVTSEALSSN 349 + ++ S+N Sbjct: 4760918 TTTTTITQFFSTN 4760956 >gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromosome 5, whole genome shotgun sequence Length = 5125352 Score = 35.4 bits (80), Expect = 0.20 Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 5/105 (4%) Frame = +2 Query: 427 LHSKQQTQNEFKTSGKKSQVPVQLDLGGMLAALEKXXXXXHASHAKPSSRPVVFSVGAVP 486 + S Q Q F+ + + P + L ++A K H+ H K + +F G +P Sbjct: 3417791 IDSIQSPQIRFRNTPSEFDQPNNVQLETLIADQFKTYSDDHSVHVKFVAIANLFKKGIIP 3417970 Query: 487 VLSKDASSSERGRR-----SSQMKTPHNPLDSSAPLMKKGKQREI 526 SKD+SSS SS +S MKKGK E+ Sbjct: 3417971 KASKDSSSSPTASSAAPGDSSSDGEGDEQSSTSTKKMKKGKPLEV 3418105 Score = 31.2 bits (69), Expect = 3.9 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 5/95 (5%) Frame = +3 Query: 278 TDGAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSM-----INLKKTTS 332 T ++ S+ +SS S T S T G +T S S +T +T + KTTS Sbjct: 1401165 TASSIASSTASSSASSTSVSSTTAGG----KTTSGGSGISTSGITGSGDSMAASTSKTTS 1401332 Query: 333 SADAKNVSVTSEALSSNPSYNREKRVYPAPKAKAS 367 + K +T ++ + S++ ++ + KAS Sbjct: 1401333 NPTGKTTGMTGSSIDHSESHSSDEHHSSSSIIKAS 1401437 >gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromosome 1, whole genome shotgun sequence Length = 4923596 Score = 32.7 bits (73), Expect = 1.3 Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 8/114 (7%) Frame = +1 Query: 262 KPVADMVEGKMVKSDHTDGAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENV 321 KPV + +GK+ + +T+ +S+ ++ SPS T + R + S+ +A T + Sbjct: 2984212 KPVNNKPKGKIEEKKNTNQLASSSLSSPSPSPTSTSTLPSSISTSRLSSSASTAPPTSTL 2984391 Query: 322 TSMINLKKTTSSADAKNVSVT--------SEALSSNPSYNREKRVYPAPKAKAS 367 S I+ +++SS+++ S S + SS+ SY YP+ + S Sbjct: 2984392 PSSISAPRSSSSSNSSTPSSLYSYLPYRYSSSSSSSSSYPSSSS-YPSSSSSYS 2984550 >gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromosome 2, whole genome shotgun sequence Length = 8484197 Score = 31.2 bits (69), Expect = 3.9 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 8/70 (11%) Frame = -2 Query: 554 SAVSLTVASDDSQD-------VESGA-SNQTPSQDNPTGPEKTEESVSSTPVVEGESEEP 605 SA SL++ +D+S D ESG+ S ++ S+ E E S S ESEE Sbjct: 6514237 SAESLSLTNDNSDDDDDDDDEFESGSESEESQSESESESSESEESSESEESSESSESEES 6514058 Query: 606 AGTEFQRDPE 615 +E+ D E Sbjct: 6514057 EESEYSDDSE 6514028 Score = 30.8 bits (68), Expect = 5.0 Identities = 25/102 (24%), Positives = 49/102 (48%) Frame = +1 Query: 262 KPVADMVEGKMVKSDHTDGAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENV 321 KP++ M K + T T+ +T++ + T +S + + V++ S ++ N Sbjct: 1681207 KPISSMSSSKTTTT--TTTTTTTGRSTTTSTSTSNIS----SDLFKTNVTTKSTSSNSNG 1681368 Query: 322 TSMINLKKTTSSADAKNVSVTSEALSSNPSYNREKRVYPAPK 363 + N K+T+S+ + S SE S + + N++ PAPK Sbjct: 1681369 NN--NNNKSTTSSTTASKSTASE--SKSTTQNKKPAPRPAPK 1681482 Score = 30.8 bits (68), Expect = 5.0 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 11/81 (13%) Frame = +1 Query: 277 HTDGAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSA---AATENVTSMIN---LKKT 330 +T TS+ +TS+ S + + TP IV ++S + +++ NVTS IN L+ T Sbjct: 1934311 NTTNMATSSTSTSTSSSSSTTTTTP---IVTNLITSSTTIENSSSSNVTSNINSSILEST 1934481 Query: 331 TSSADAKNVSV-----TSEAL 346 +SS + SV TSE L Sbjct: 1934482 SSSTSLSSTSVNPLSATSEIL 1934544 Score = 30.0 bits (66), Expect = 8.6 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%) Frame = +1 Query: 278 TDGAVTSNAT-TSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSSADA 336 T A T ++T T++ + E + TP+ IV + ++ SA+A T KKTT++ A Sbjct: 5731993 TKSAPTKSSTKTAATTPVVEGATTPVAKIVVKKTTATSASAPTPATKATTTKKTTTTTKA 5732172 Query: 337 KNVSVTSEALSSNP--SYNREKRVYP 360 T++A + P Y K++ P Sbjct: 5732173 ----TTTKAKEAEPVEVYEEMKKMTP 5732238 Database: D.discoideum_AX4/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 33,943,072 Number of sequences in database: 6 Lambda K H 0.311 0.126 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,159,860 Number of Sequences: 6 Number of extensions: 215834 Number of successful extensions: 929 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 651 Number of HSP's gapped (non-prelim): 545 length of query: 858 length of database: 11,314,357 effective HSP length: 109 effective length of query: 749 effective length of database: 11,313,703 effective search space: 8473963547 effective search space used: 8473963547 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 66 (30.0 bits)