TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000106_1.0 # Protein # SECIS binding protein 2 (SBP2) # Mus musculus # Complete (858 letters) Database: C.fasciculata/genome.fa 1089 sequences; 37,048,325 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value Cf_Contig1053 | | 1 to 375645 35 0.29 Cf_Contig1037 | | 1 to 136662 35 0.29 Cf_Contig616 | | 1 to 39895 35 0.38 Cf_Contig638 | | 1 to 35812 34 0.49 Cf_Contig1043 | | 1 to 264934 33 1.1 Cf_Contig1024 | | 1 to 108120 33 1.4 Cf_Contig982 | | 1 to 84150 33 1.4 Cf_Contig930 | | 1 to 140823 33 1.4 Cf_Contig946 | | 1 to 179534 32 1.9 Cf_Contig998 | | 1 to 108114 32 2.4 Cf_Contig741 | | 1 to 201246 32 2.4 Cf_Contig1050 | | 1 to 279392 32 3.2 Cf_Contig970 | | 1 to 287441 32 3.2 Cf_Contig866 | | 1 to 136535 32 3.2 Cf_Contig851 | | 1 to 56518 31 4.2 Cf_Contig771 | | 1 to 94184 31 4.2 Cf_Contig1061 | | 1 to 139244 31 5.4 Cf_Contig1057 | | 1 to 538345 31 5.4 Cf_Contig1033 | | 1 to 89544 31 5.4 Cf_Contig804 | | 1 to 41119 31 5.4 Cf_Contig1071 | | 1 to 673414 30 7.1 Cf_Contig1048 | | 1 to 336746 30 7.1 Cf_Contig1028 | | 1 to 123489 30 7.1 Cf_Contig1006 | | 1 to 94454 30 7.1 Cf_Contig962 | | 1 to 144048 30 7.1 Cf_Contig960 | | 1 to 129949 30 7.1 Cf_Contig902 | | 1 to 162394 30 7.1 Cf_Contig882 | | 1 to 48816 30 7.1 Cf_Contig865 | | 1 to 83857 30 7.1 Cf_Contig674 | | 1 to 21912 30 7.1 Cf_Contig623 | | 1 to 70207 30 7.1 Cf_Contig1052 | | 1 to 356154 30 9.3 Cf_Contig829 | | 1 to 170636 30 9.3 Cf_Contig793 | | 1 to 140129 30 9.3 Cf_Contig789 | | 1 to 27447 30 9.3 Cf_Contig785 | | 1 to 197696 30 9.3 Cf_Contig650 | | 1 to 34055 30 9.3 Cf_Contig605 | | 1 to 10135 30 9.3 >Cf_Contig1053 | | 1 to 375645 Length = 375645 Score = 35.0 bits (79), Expect = 0.29 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = +2 Query: 134 CPPPQEAKGVFKKKPSDERRACEEQKSSSRR 164 C PP+ + +F+++P+ RR C +SS RR Sbjct: 331403 CTPPRPPRRIFRRRPAQVRRLCRRHRSSCRR 331495 Score = 33.5 bits (75), Expect = 0.84 Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 12/140 (8%) Frame = +3 Query: 235 MPETQKPPRWGPLGPAASNMPLLGDVGKPVADMVEGKMVKSDHTDGAVTSNATTSSPSCT 294 +P ++PP PL AA+ P PVA + +V+ G + A P Sbjct: 295116 VPNLRQPPPSPPLVTAAAAAPASAPTATPVASL--SSIVRPRARSGIGAAAAAAPPPPAA 295289 Query: 295 QELSWTPMGY---IVRQTVSSDSAAATENVTSM---------INLKKTTSSADAKNVSVT 342 S P G + R+ S ++A A + +M N +T +A A ++ V Sbjct: 295290 AAASGGPRGNGVDVEREASSLNTAVAAASTLAMHGHSSSLTSPNAARTAPAAPASSLVVW 295469 Query: 343 SEALSSNPSYNREKRVYPAP 362 + SS P + AP Sbjct: 295470 TPLASSGPPAGPSRAAAAAP 295529 Score = 31.6 bits (70), Expect = 3.2 Identities = 26/113 (23%), Positives = 49/113 (43%) Frame = -3 Query: 255 PLLGDVGKPVADMVEGKMVKSDHTDGAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDS 314 PL G+P D + + VK++ TDG ++ T ++ + T P+ + SS + Sbjct: 152722 PLKRRPGRPRRDAAKNQAVKTEQTDGVDEAHVTAATATAT--TVHPPLAPLSPSPTSSAA 152549 Query: 315 AAATENVTSMINLKKTTSSADAKNVSVTSEALSSNPSYNREKRVYPAPKAKAS 367 +A+ N DA + S +S ++ +P+ +PAP + S Sbjct: 152548 SASLHN-------------GDAFSSSPSSASILWSPAATYSTAHHPAPHSSPS 152429 >Cf_Contig1037 | | 1 to 136662 Length = 136662 Score = 35.0 bits (79), Expect = 0.29 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Frame = +3 Query: 100 SAQSVCSVPTLQYDYSQARC-HPGFRTAKPRHEHVCPPPQEAKGVFKKKPSDERRACEEQ 158 + QS C+ + ++ARC + + P +H PPP V + + S+E AC E+ Sbjct: 77439 AVQSCCTTHSFM---AEARCINRSTANSPPSPQHSPPPPSSTALVGRHRTSEEAEACVEK 77609 Query: 159 KSSSRRADN-AVPCEAR 174 + RA+ AVP AR Sbjct: 77610 VAKPLRANPLAVPAAAR 77660 Score = 32.3 bits (72), Expect = 1.9 Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 9/69 (13%) Frame = -3 Query: 119 CHPGFRTAKPRHEHVC--PPPQEAKGVFKKKPSDER----RACEEQKSSSRRADN---AV 169 C P P H C PPP A+ + P+ R R C ++SS RR A Sbjct: 58801 CSPTRPRPPPTHPPSCCRPPPHPARPP-RPCPTHHRPRRRRRCSRRRSSRRRRRRWPPAS 58625 Query: 170 PCEARPARG 178 PC A PARG Sbjct: 58624 PCAAGPARG 58598 >Cf_Contig616 | | 1 to 39895 Length = 39895 Score = 34.7 bits (78), Expect = 0.38 Identities = 18/52 (34%), Positives = 23/52 (44%) Frame = +3 Query: 112 YDYSQARCHPGFRTAKPRHEHVCPPPQEAKGVFKKKPSDERRACEEQKSSSR 163 +++ ARC TA PR H PP Q A+ PS RR C + R Sbjct: 11928 HNHPTARCRCRHSTAAPRRTHATPPAQSARAA----PSPVRRRCRRASAPPR 12071 >Cf_Contig638 | | 1 to 35812 Length = 35812 Score = 34.3 bits (77), Expect = 0.49 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 9/71 (12%) Frame = -1 Query: 115 SQARCHPGFRTAKPRHEHVCPPPQEA--KGVFKKK-----PSDERRACEEQK--SSSRRA 165 S+ C PG ++ PR E PP E +G ++ P+D R C + S+SRR Sbjct: 11440 SRRPCGPG--SSHPRQESTSPPAPECGRRGTRPRRSCGRPPADRRGGCRRRTAGSASRRG 11267 Query: 166 DNAVPCEARPA 176 A PC + PA Sbjct: 11266 RPAPPCTSAPA 11234 >Cf_Contig1043 | | 1 to 264934 Length = 264934 Score = 33.1 bits (74), Expect = 1.1 Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 1/95 (1%) Frame = +1 Query: 83 SSEIALHPFAYPTYTLESAQSVCSVPTLQYDYSQARCHPGFRTAKPRHEHVCP-PPQEAK 141 SS + FA P + + S C+ P S RCHP ++ P+ + P PP A Sbjct: 32827 SSMVEKPVFAIPDGAVYTFVSACTRPPAS---SSCRCHPREGSSTPKGKTRLPLPPPSAS 32997 Query: 142 GVFKKKPSDERRACEEQKSSSRRADNAVPCEARPA 176 + RR+C S+ A A A A Sbjct: 32998 AFVATRGRSSRRSCSATASAEGGAGGARSAAAAAA 33102 Score = 30.0 bits (66), Expect = 9.3 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%) Frame = -1 Query: 229 SPKNS-NMPETQKPPRWGPLGP 249 SP+ S +MP T+KPP W PL P Sbjct: 43960 SPQRSWSMPSTRKPPAWTPLPP 43895 >Cf_Contig1024 | | 1 to 108120 Length = 108120 Score = 32.7 bits (73), Expect = 1.4 Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 18/128 (14%) Frame = +2 Query: 568 VESGASNQTPSQDNPTGPEKTEESVSSTPVVEGESEEPAGTEFQRDPEACQPAPDSATFP 627 + A+ P++D+ P+ + S PV EGE P+G+ R A PA A Sbjct: 40871 ISLAATPAPPTRDHQESPDHSHNVES--PVKEGEHASPSGSPSPRSQRAVSPAVRFAEID 41044 Query: 628 KIHS-----RRFRDYCS-------------QMLSKEVDACVTGLLKELVRFQDRMYQKDP 669 + +RF CS + L+K + T +L + M Q D Sbjct: 41045 AMQKELEEIQRFARDCSGEADTEGAEEKEEERLAKTLTQAYTRVLASTATMEGSMAQTDD 41224 Query: 670 VKAKTKRR 677 KA + R Sbjct: 41225 EKALSTSR 41248 >Cf_Contig982 | | 1 to 84150 Length = 84150 Score = 32.7 bits (73), Expect = 1.4 Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 7/82 (8%) Frame = -1 Query: 94 PTYTLESAQSVCSVPTLQYDYSQA-RCHPGFRTAKPRHEHV------CPPPQEAKGVFKK 146 P +L S LQ++++QA CHP P H CP P A K Sbjct: 41151 PLLSLPPLSLSASTHALQFNHTQAPSCHPTLPLHSPHHPPAHTQPTTCPFPTAAAATMSK 40972 Query: 147 KPSDERRACEEQKSSSRRADNA 168 + + A SS ADNA Sbjct: 40971 EEKVNQNAEVISNSSDNDADNA 40906 >Cf_Contig930 | | 1 to 140823 Length = 140823 Score = 32.7 bits (73), Expect = 1.4 Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 9/69 (13%) Frame = +2 Query: 119 CHPGFRTAKPRHEHVC--PPPQEAKG----VFKKKPSDERRACEEQKSSSR---RADNAV 169 C P P H C PPP A+ + +P RR C ++SS R R A Sbjct: 121154 CSPTRPRPPPTHPPSCCRPPPHPARPPRPCLMHHRPR-RRRRCSRRRSSRRLRRRWPPAS 121330 Query: 170 PCEARPARG 178 PC A PARG Sbjct: 121331 PCAAGPARG 121357 >Cf_Contig946 | | 1 to 179534 Length = 179534 Score = 32.3 bits (72), Expect = 1.9 Identities = 45/206 (21%), Positives = 71/206 (34%) Frame = +3 Query: 311 SSDSAAATENVTSMINLKKTTSSADAKNVSVTSEALSSNPSYNREKRVYPAPKAKASQGG 370 SS S++++ +V S + + SS+ + +V +S + SS+PS + P+ + +S Sbjct: 161862 SSPSSSSSSSVPSSSSSSSSPSSSSSSSVPSSSSS-SSSPSSSSSSSSVPSSSSSSSSPS 162038 Query: 371 ELEQXXXXXXXXXXXXXXXPSYEVLTVQEPPRIEDAEEFPNLSVASERRHRGQSPKLHSK 430 PS + P + P+ S +S S S Sbjct: 162039 SSSSSSSV-----------PSSSSSSSSSPSSSSSSSSVPSTSSSSSSPSSSSSSSSVSV 162185 Query: 431 QQTQNEFKTSGKKSQVPVQLDLGGMLAALEKXXXXXHASHAKPSSRPVVFSVGAVPVLSK 490 Q Q +S S VP S + SS P S + P S Sbjct: 162186 QL*QQLVPSSSSSSSVP------------SSSSSSSSPSSSSSSSVPSSSSSSSSPSSSS 162329 Query: 491 DASSSERGRRSSQMKTPHNPLDSSAP 516 +SSS SS + SSAP Sbjct: 162330 SSSSSVPSSSSSSSSPSSSSSSSSAP 162407 >Cf_Contig998 | | 1 to 108114 Length = 108114 Score = 32.0 bits (71), Expect = 2.4 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 5/84 (5%) Frame = -3 Query: 89 HPFAYPTYTLESAQSVCSVPTLQ-----YDYSQARCHPGFRTAKPRHEHVCPPPQEAKGV 143 HP + L S S C V +Q YD R P R ++ E PPP++ + Sbjct: 97192 HPHTVSFFPLTSPSSRCFVEPVQVFSLVYDLKNGRP*PQERDSRAAQEPQAPPPRDHRDR 97013 Query: 144 FKKKPSDERRACEEQKSSSRRADN 167 + + RR C Q +++ D+ Sbjct: 97012 PEGSRARSRRRCGGQAAAAGPQDH 96941 >Cf_Contig741 | | 1 to 201246 Length = 201246 Score = 32.0 bits (71), Expect = 2.4 Identities = 30/126 (23%), Positives = 51/126 (40%) Frame = +3 Query: 232 NSNMPETQKPPRWGPLGPAASNMPLLGDVGKPVADMVEGKMVKSDHTDGAVTSNATTSSP 291 +S +P + PPRW PL P L P A + G M ++ A T A + Sbjct: 164517 HS*LPHSTSPPRWPPL-------PRL-----PTAKVATGVMRRATALQVAHTQLAQPET- 164657 Query: 292 SCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSSADAKNVSVTSEALSSNPS 351 E + M +VR T + + A T T+ T ++ A+ + T+ ++ + Sbjct: 164658 ----EKTAPRMPTVVRSTTTITTTALTRTTTTTAATTMTAATLPARRTTTTTTMAAATLT 164825 Query: 352 YNREKR 357 R +R Sbjct: 164826 SPRRRR 164843 >Cf_Contig1050 | | 1 to 279392 Length = 279392 Score = 31.6 bits (70), Expect = 3.2 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = -3 Query: 400 PPRIEDAEEFPNLSVASERRHRGQSPKLHS 429 PPR+ DA P L S RR +P+LHS Sbjct: 50652 PPRLHDAHRAPQLRRRSSRRRTRWAPRLHS 50563 >Cf_Contig970 | | 1 to 287441 Length = 287441 Score = 31.6 bits (70), Expect = 3.2 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 4/60 (6%) Frame = -1 Query: 121 PGFRTAKPRHEH----VCPPPQEAKGVFKKKPSDERRACEEQKSSSRRADNAVPCEARPA 176 PG RT K R + C PP + + P R + SS R+ PC RPA Sbjct: 82334 PGCRTRKDRRQADRPPSCCPPSTGRRSGSRSPRRRRGRGGSGQGSSSRSSRGHPCRGRPA 82155 >Cf_Contig866 | | 1 to 136535 Length = 136535 Score = 31.6 bits (70), Expect = 3.2 Identities = 15/41 (36%), Positives = 23/41 (56%) Frame = -2 Query: 289 SSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKK 329 SS C+Q +SW +V ++SS SA+A + TS K+ Sbjct: 71053 SSSCCSQRVSWAVSSLLVLFSISSGSASAVASTTSRFIFKR 70931 >Cf_Contig851 | | 1 to 56518 Length = 56518 Score = 31.2 bits (69), Expect = 4.2 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%) Frame = -3 Query: 400 PPRIEDAEEFPNLSV---ASERRHRGQSPKLHSKQQTQNEFKTSGKKS 444 PPR E+ E SV ++ RH G++P L + +QT+ + +GK+S Sbjct: 29651 PPRREERGERRGCSVDCCSAHSRHSGETPVLETNKQTKVNERGTGKRS 29508 Score = 31.2 bits (69), Expect = 4.2 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 3/61 (4%) Frame = +1 Query: 118 RCHPGFRTAKPRH--EHVCPPPQEAKGVFKKKP-SDERRACEEQKSSSRRADNAVPCEAR 174 RC TA+ H H+CP P VF + P + RR+ +K S R P E R Sbjct: 27685 RCVAEGDTAQCPHCSPHICPSPACCSEVFAETPVTARRRSPSRRKPSEGRGGRRGPAEER 27864 Query: 175 P 175 P Sbjct: 27865 P 27867 >Cf_Contig771 | | 1 to 94184 Length = 94184 Score = 31.2 bits (69), Expect = 4.2 Identities = 37/158 (23%), Positives = 59/158 (37%), Gaps = 1/158 (0%) Frame = +1 Query: 198 RPDRKSRILAKSASTSKPEFEFSRLDFPELQSPKNSNMPETQKPPRWGPLGPAASNMPLL 257 RP R + +S+S P SP ++ + T +P S+ PL Sbjct: 89566 RPSSARRCTRRLSSSSPPRCS---------SSPPSTALSTTSQPSWSSTRARGRSSSPLP 89718 Query: 258 GDVGKPVADMVEGKMVKSDHTDGAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAA 317 P A + + +S + T SP+C S TP+ ++ S S+ A Sbjct: 89719 L*RASPAATSTRARCWQPARWTPRSSSTSWTRSPTCRTSSSSTPLAARAARSSSPTSSRA 89898 Query: 318 TENVTSMINLKKTTSSADAKNVSVTSEA-LSSNPSYNR 354 T + S + SA + + S A SS+PS R Sbjct: 89899 TPTLASW--WSS*SGSARRRTAACASAA*RSSSPSPRR 90006 >Cf_Contig1061 | | 1 to 139244 Length = 139244 Score = 30.8 bits (68), Expect = 5.4 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 14/96 (14%) Frame = +3 Query: 237 ETQKPPRWGPLGPAAS-NMPLLGDVGKPVADMVEGKMVKSDHTDGAVTSNATTSSPS--- 292 + QKP PL A++ MP++ VG+PVA + + + + + S+P+ Sbjct: 27747 QQQKPVVLHPLEEAST*QMPVVVAVGQPVARVGPPQSASAPPAVPGAATVPSRSAPTTTT 27926 Query: 293 ----------CTQELSWTPMGYIVRQTVSSDSAAAT 318 CT+ W P + R+TVSS AA T Sbjct: 27927 SILSCCIVDRCTRPARWWPRWWRRRRTVSSCRAAWT 28034 >Cf_Contig1057 | | 1 to 538345 Length = 538345 Score = 30.8 bits (68), Expect = 5.4 Identities = 23/78 (29%), Positives = 38/78 (48%) Frame = +1 Query: 274 KSDHTDGAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSS 333 +S + + S SSPS + +TP + SS ++++ + S+ TTSS Sbjct: 451771 RSAPSSSSSLSPLAPSSPSSRSKRGFTPSAASSSSSSSSSPSSSSSSSRSIRRSSSTTSS 451950 Query: 334 ADAKNVSVTSEALSSNPS 351 A SV+S + SS+PS Sbjct: 451951 AS----SVSSPSSSSSPS 451992 >Cf_Contig1033 | | 1 to 89544 Length = 89544 Score = 30.8 bits (68), Expect = 5.4 Identities = 49/232 (21%), Positives = 78/232 (33%), Gaps = 22/232 (9%) Frame = -3 Query: 301 PMGYIVRQTVSSDSAAATENVTSM-INLKKTTSSADAKNVSVTSEALSSNPSYNREKRVY 359 P G + + S +A A + TS N +AD ++ TSE+ N S R Sbjct: 34771 PHGDVRHGVLESGTAGAERSQTSSDTNADLMHVAADGESAVSTSESSVGNASDERRAEAE 34592 Query: 360 PAPKAKASQGGELE-----QXXXXXXXXXXXXXXXPSYEVLTVQEPPRIE---------- 404 +++A Q PS ++ T P + Sbjct: 34591 AVARSEAEQQARRRVSPRPPSLFPPLPSLPAAQAPPSPQLATAAASPLVSLPQLSHVTNH 34412 Query: 405 -----DAEEFPNLSVASERRHRGQSPKLHSKQQTQNEFKT-SGKKSQVPVQLDLGGMLAA 458 + + F + SERR +P L T + S S P + + Sbjct: 34411 PLPDSETQAFAPEPLLSERRAHNDTPLLDRAATTAAAAASASSTASSKPRTVSSSSQSSK 34232 Query: 459 LEKXXXXXHASHAKPSSRPVVFSVGAVPVLSKDASSSERGRRSSQMKTPHNP 510 E+ H +PS V ++G+ P+ SSS+ RRSS + P P Sbjct: 34231 AERADSEQH----QPSRHSVTHAMGSPPL-----SSSDSSRRSSPVVAPTRP 34103 >Cf_Contig804 | | 1 to 41119 Length = 41119 Score = 30.8 bits (68), Expect = 5.4 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 3/105 (2%) Frame = -3 Query: 53 PFVQEPPAAEQKMYPEDMA--FGAPTFPAQYVSSEIALHPFAYPTYTLESAQS-VCSVPT 109 P Q+P A+Q+ + P P Q S + HP +PT T S+++ C P+ Sbjct: 22067 PHPQQPQPAQQQQQQQQQQPQKPGPQQPGQPQSQPHSFHPSPFPTRTHSSSRTPACLAPS 21888 Query: 110 LQYDYSQARCHPGFRTAKPRHEHVCPPPQEAKGVFKKKPSDERRA 154 + RC R + PPP+ + + ++RA Sbjct: 21887 Q*TG*CRCRCR--CRCPRCPWRRRTPPPRATQACHHHRQQQQQRA 21759 >Cf_Contig1071 | | 1 to 673414 Length = 673414 Score = 30.4 bits (67), Expect = 7.1 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Frame = +1 Query: 119 CHPGFR---TAKPRHEHVCPPPQEAKGVFKKKPSDERRACEEQKSSSRRA 165 C P R + +H+H CPP Q+ +++P R C + SS+ A Sbjct: 513694 CAPSCRCGCASAAQHQHCCPPQQQQ----RQRPHSSARVCTSRPSSAASA 513831 >Cf_Contig1048 | | 1 to 336746 Length = 336746 Score = 30.4 bits (67), Expect = 7.1 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Frame = -3 Query: 281 AVTSNATTSSPSCTQELSWTPMG-YIVRQTVSSDSAAATENVTSMINLKKTTSSA 334 ++++ A+T SPSC+ L+WT + + S+ +T VT + + TS+A Sbjct: 72387 SMSATASTVSPSCSSTLTWT*RNTWTAKTATSTRRRCSTSCVTCCVVSRSVTSAA 72223 >Cf_Contig1028 | | 1 to 123489 Length = 123489 Score = 30.4 bits (67), Expect = 7.1 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Frame = -1 Query: 100 SAQSVCSVPTLQYDYSQARCHPGFRTAKPRHEH-VCPPPQEAKGVFKKKPSDERRACEEQ 158 +A+SVCS D R P R PRHE V PPP E + V + + RR + Sbjct: 107826 NARSVCSAAAAAVD---PRTLPRVRIECPRHEGNVPPPPVELQKVEEAEERPRRRTAAVR 107656 Query: 159 KSS 161 SS Sbjct: 107655 MSS 107647 >Cf_Contig1006 | | 1 to 94454 Length = 94454 Score = 30.4 bits (67), Expect = 7.1 Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Frame = -3 Query: 97 TLESAQSVCSVPTLQYDYSQARCHPGFRTAKPRHEH-VCPPPQEAKGVFKKKPSDERRAC 155 T A+ VCS + D R P R A PRH V PPP E K V + + RR Sbjct: 28176 TTAIARLVCSAAAVAVD---PRTLPRVRIACPRHRGNVPPPPVEPKKVEEAEERPRRRTA 28006 Query: 156 EEQKSS 161 + SS Sbjct: 28005 AVRMSS 27988 >Cf_Contig962 | | 1 to 144048 Length = 144048 Score = 30.4 bits (67), Expect = 7.1 Identities = 27/85 (31%), Positives = 30/85 (35%) Frame = -2 Query: 207 AKSASTSKPEFEFSRLDFPELQSPKNSNMPETQKPPRWGPLGPAASNMPLLGDVGKPVAD 266 A +AST P R P P+ S TQ PPRWG A P G A Sbjct: 30482 APAASTRSPRGTPCRSQPPPSPPPRGST--STQAPPRWGSTSRARCRSPPGPRPGSCAAR 30309 Query: 267 MVEGKMVKSDHTDGAVTSNATTSSP 291 G+ S A TSSP Sbjct: 30308 W--GRRTSSSTARPGAGCRACTSSP 30240 >Cf_Contig960 | | 1 to 129949 Length = 129949 Score = 30.4 bits (67), Expect = 7.1 Identities = 38/150 (25%), Positives = 57/150 (38%), Gaps = 17/150 (11%) Frame = -1 Query: 45 PGCAATYYPFVQEPPAAEQKMYPEDMAFGAPTFPAQYVSSEIALHPFAYPT--------- 95 P C + +P + P A YP+ A G+ ++Y+S +A A P Sbjct: 61306 PPCPSCPFPPLSAPLAP----YPQQEAAGSRRSRSRYLS--VAARASARPPRRVRRRCAF 61145 Query: 96 YTLESAQSV--------CSVPTLQYDYSQARCHPGFRTAKPRHEHVCPPPQEAKGVFKKK 147 +TL +S C+ P++ + R TA RH PP Q + + + Sbjct: 61144 WTLWKRRSARSRRSSARCATPSVPRSAHRRRQRRRQTTAAARHRRR-PPQQRQRRRPRPR 60968 Query: 148 PSDERRACEEQKSSSRRADNAVPCEARPAR 177 S RR C SSS A + PAR Sbjct: 60967 CSWSRRTCSTTHSSSPPATSTTSPPHSPAR 60878 >Cf_Contig902 | | 1 to 162394 Length = 162394 Score = 30.4 bits (67), Expect = 7.1 Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 3/94 (3%) Frame = -1 Query: 246 PLGPAASNMPLLGDVGKPVADMVEGKMVKSDHTDGAVT---SNATTSSPSCTQELSWTPM 302 P+GP S P G+ D+ TD A+T + TTSSP + TP Sbjct: 142183 PVGPQYSPRPPPDRRGRNCRDVT---------TDAALT*RSPSVTTSSPLASTNGRSTPS 142031 Query: 303 GYIVRQTVSSDSAAATENVTSMINLKKTTSSADA 336 Y+V S S AA + S ++ T + A A Sbjct: 142030 KYVVAAQGRSPSRAAITHAGSTASVPTTCAEARA 141929 >Cf_Contig882 | | 1 to 48816 Length = 48816 Score = 30.4 bits (67), Expect = 7.1 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = +1 Query: 269 EGKMVKSDHTDGAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAAT 318 E K V S H GAV +++T + + SW + +TV+ DS AT Sbjct: 19684 EMKDVSSTHCTGAVVTSSTPGTSAAVASYSW*HRFISLTRTVAFDSVTAT 19833 >Cf_Contig865 | | 1 to 83857 Length = 83857 Score = 30.4 bits (67), Expect = 7.1 Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 3/94 (3%) Frame = +1 Query: 246 PLGPAASNMPLLGDVGKPVADMVEGKMVKSDHTDGAVT---SNATTSSPSCTQELSWTPM 302 P+GP S P G+ D+ TD A+T + TTSSP + TP Sbjct: 69163 PVGPQYSPRPPPDRRGRNCRDVT---------TDAALT*RSPSVTTSSPLASTNGRSTPS 69315 Query: 303 GYIVRQTVSSDSAAATENVTSMINLKKTTSSADA 336 Y+V S S AA + S ++ T + A A Sbjct: 69316 KYVVAAQGRSPSRAAITHAGSTASVPTTCAEARA 69417 >Cf_Contig674 | | 1 to 21912 Length = 21912 Score = 30.4 bits (67), Expect = 7.1 Identities = 22/60 (36%), Positives = 25/60 (41%) Frame = +3 Query: 117 ARCHPGFRTAKPRHEHVCPPPQEAKGVFKKKPSDERRACEEQKSSSRRADNAVPCEARPA 176 AR PG R + RH H C PP A G + RR +S RR C RPA Sbjct: 4140 ARVAPGSRVGR-RHRHPCQPPSPADGRAGRWVR-RRRGRSGSRSGLRRGS----CRVRPA 4301 >Cf_Contig623 | | 1 to 70207 Length = 70207 Score = 30.4 bits (67), Expect = 7.1 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Frame = +2 Query: 197 KRPDRKSRILAKSASTSKPEFEFSRLDFPELQSPKNSNMPET-QKPPRWGPLGPAASN 253 +R + R + + +P +R P +SP+ + P + Q PPR P GPA++N Sbjct: 44771 RRSRARRRTTTRPRHSCRPHSRKTRRPLPPRRSPRPTCPPPSCQSPPRTFPGGPASTN 44944 >Cf_Contig1052 | | 1 to 356154 Length = 356154 Score = 30.0 bits (66), Expect = 9.3 Identities = 48/241 (19%), Positives = 75/241 (31%), Gaps = 3/241 (1%) Frame = -3 Query: 390 PSYEVLTVQEPPRIEDAEEFPNLSVASERRHRGQSPKLHSKQQTQNEFKTSGKKSQVPVQ 449 P+ T Q+P R ++ + P SV ER QQTQ S ++ Sbjct: 302071 PTNATSTRQQPQREQEGRDAPTASVKLERAGEATEGAQQQPQQTQQPQPPSAAQTDALA- 301895 Query: 450 LDLGGMLAALEKXXXXXHASHAKPSSRPVVFSVGAVPVLSKDASSSERGRRSSQMKTPHN 509 G A + P +RP V + ASS++ G + T Sbjct: 301894 ---AGPAATVPPLRTGKSVLRTAPRARPAKTPQHVVTPQRQPASSTQ-GEAQVERATLAT 301727 Query: 510 PLDSSAPLMKKGKQREIPKAKKPTSLKKIILKXXXXXXXXXXXXSAVSLTVASDDSQDVE 569 PL S + + E A + ++ + + + V D+ Sbjct: 301726 PLLSQPAVHTAEEDEERAAAAEQHPQQRQLTRLRRSPSGTGVAPAVEDADVPRSDAVHSV 301547 Query: 570 SGASNQTPSQD---NPTGPEKTEESVSSTPVVEGESEEPAGTEFQRDPEACQPAPDSATF 626 + + P+ + P KT E + P V PA T A PA T Sbjct: 301546 TASHTAEPAPSATVSHASPLKTSEPPVALPRVPRSVRHPATTAV--PTPAVAPAAAEVTL 301373 Query: 627 P 627 P Sbjct: 301372 P 301370 >Cf_Contig829 | | 1 to 170636 Length = 170636 Score = 30.0 bits (66), Expect = 9.3 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 4/70 (5%) Frame = -2 Query: 269 EGKMVKSDHTDGAVTSNATTSSPSCTQELSWTPMGYIVR-QTVSSDSAAAT---ENVTSM 324 E + +++ A ++AT ++P C + +P G QT ++D+AAAT EN T++ Sbjct: 62527 EAREAETETAAAAPPADATPTTPECPSVVKGSPPGASESGQTTTADAAAATSAAENETAV 62348 Query: 325 INLKKTTSSA 334 + T A Sbjct: 62347 TDAAATAPDA 62318 >Cf_Contig793 | | 1 to 140129 Length = 140129 Score = 30.0 bits (66), Expect = 9.3 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%) Frame = +1 Query: 128 PRHE---HVCPPPQEAKGVFKKKPSDERRACEEQKS-SSRRADNAVPCE 172 P+H H+C PPQ KKK ER +++K + +R +PC+ Sbjct: 137638 PQHSSLTHLCRPPQRT*TPQKKKSEKEREEKKQEKG*NEKRKRGIMPCQ 137784 >Cf_Contig789 | | 1 to 27447 Length = 27447 Score = 30.0 bits (66), Expect = 9.3 Identities = 14/48 (29%), Positives = 21/48 (43%) Frame = -3 Query: 108 PTLQYDYSQARCHPGFRTAKPRHEHVCPPPQEAKGVFKKKPSDERRAC 155 P + + RCHPG + H+H C A+G ++ P AC Sbjct: 19201 PPRHHRHRLLRCHPGSAARRETHQHGC-EGAAARGSRRRAPRHAAHAC 19061 >Cf_Contig785 | | 1 to 197696 Length = 197696 Score = 30.0 bits (66), Expect = 9.3 Identities = 16/48 (33%), Positives = 20/48 (41%) Frame = +3 Query: 130 HEHVCPPPQEAKGVFKKKPSDERRACEEQKSSSRRADNAVPCEARPAR 177 H + PPP P + AC ++SS RRA C PAR Sbjct: 192372 HPRLAPPP----------PVEHESACVARRSSPRRASGGRACTGPPAR 192485 >Cf_Contig650 | | 1 to 34055 Length = 34055 Score = 30.0 bits (66), Expect = 9.3 Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 19/79 (24%) Frame = -3 Query: 196 HKRPDRKSRILAKSASTSKPEFEFSRLDFPELQSPK-----------------NSNMPET 238 H+R + S T+ P SR DFPE PK +S+ Sbjct: 1350 HRRNPQTPE*SQPSWRTASPR---SRTDFPETPPPKSPWR*QEARPPAP*KAPDSHHSAA 1180 Query: 239 QKPPRWGPL--GPAASNMP 255 PPRWG + PAA+N P Sbjct: 1179 SPPPRWGSMTSWPAAANRP 1123 >Cf_Contig605 | | 1 to 10135 Length = 10135 Score = 30.0 bits (66), Expect = 9.3 Identities = 29/105 (27%), Positives = 39/105 (37%), Gaps = 1/105 (0%) Frame = +1 Query: 232 NSNMPETQKPPRWGPLGPAASNMPLLGDVGKPVADMVEGKMVKSDHTDGAVTSNATTSSP 291 +S P PP PAA P+ P A VK T G TSSP Sbjct: 8572 SSGTPPPPPPPAAAAAAPAAVATPIPKSTKSPTA-----AAVKKRRTGG-------TSSP 8715 Query: 292 SC-TQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSSAD 335 S T+ + TP+ ++D AA + T T S+A+ Sbjct: 8716 SASTRSNTPTPLPTAAASVATTDLGAAAADATDGTERSLTASTAE 8850 Database: C.fasciculata/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 37,048,325 Number of sequences in database: 1089 Lambda K H 0.311 0.126 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,014,151 Number of Sequences: 1089 Number of extensions: 731235 Number of successful extensions: 5410 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 329 Number of HSP's successfully gapped in prelim test: 233 Number of HSP's that attempted gapping in prelim test: 3405 Number of HSP's gapped (non-prelim): 3676 length of query: 858 length of database: 12,349,441 effective HSP length: 110 effective length of query: 748 effective length of database: 12,229,651 effective search space: 9147778948 effective search space used: 9147778948 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 66 (30.0 bits)