TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000106_1.0 # Protein # SECIS binding protein 2 (SBP2) #
Mus musculus # Complete
         (858 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330849845|gb|ADNL01000758.1| Astrammina rara contig00868, who...    26   3.2  
gi|330849611|gb|ADNL01000992.1| Astrammina rara contig01157, who...    25   7.2  

>gi|330849845|gb|ADNL01000758.1| Astrammina rara contig00868, whole
           genome shotgun sequence
          Length = 663

 Score = 25.8 bits (55), Expect = 3.2
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = -3

Query: 555 AVSLTVASDDSQDVESGASNQTPSQDNPTGPEKTEESVSSTPVVEGES 602
           +V + +A+    D  SG + +  +  +    ++   S S+TP ++GES
Sbjct: 256 SVGIALATFPHHDSSSGNAGRPHTSSSTLALDQQRVSASNTPALDGES 113


>gi|330849611|gb|ADNL01000992.1| Astrammina rara contig01157, whole
           genome shotgun sequence
          Length = 241

 Score = 24.6 bits (52), Expect = 7.2
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 253 NMPLLGDVGKP-VADMVEGKMVKSDHTDGAVT 283
           N+P++G++GKP  +D+     V  DH  GA++
Sbjct: 5   NVPVIGNLGKPWCSDVRTVLEVYDDHFTGALS 100


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.311    0.126    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,173,486
Number of Sequences: 3231
Number of extensions: 14557
Number of successful extensions: 66
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of query: 858
length of database: 483,365
effective HSP length: 82
effective length of query: 776
effective length of database: 218,423
effective search space: 169496248
effective search space used: 169496248
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)