TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000106_1.0 # Protein # SECIS binding protein 2 (SBP2) #
Mus musculus # Complete
         (858 letters)

Database: A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325180465|emb|FR824052.1| Albugo laibachii Nc14, genomic cont...    31   3.6  
gi|325191004|emb|FR824347.1| Albugo laibachii Nc14, genomic cont...    31   3.6  
gi|325187025|emb|FR824172.1| Albugo laibachii Nc14, genomic cont...    31   4.7  
gi|325179460|emb|FR824046.1| Albugo laibachii Nc14, genomic cont...    30   6.1  
gi|325184401|emb|FR824104.1| Albugo laibachii Nc14, genomic cont...    30   6.1  
gi|325181994|emb|FR824067.1| Albugo laibachii Nc14, genomic cont...    30   8.0  
gi|325188241|emb|FR824213.1| Albugo laibachii Nc14, genomic cont...    30   8.0  

>gi|325180465|emb|FR824052.1| Albugo laibachii Nc14, genomic contig
              CONTIG_7_NC14_v4_241751_227
          Length = 241751

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 215    PEFEFSRLDFPELQSPKNSNMPETQKP 241
              P+F+++R   P+  SPK+S+ P T  P
Sbjct: 234510 PQFDYTRFPLPKADSPKSSSFPRTLLP 234430


>gi|325191004|emb|FR824347.1| Albugo laibachii Nc14, genomic contig
             CONTIG_302_NC14_v4_31286_130
          Length = 31286

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 215   PEFEFSRLDFPELQSPKNSNMPETQKP 241
             P+F+++R   P+  SPK+S+ P T  P
Sbjct: 15779 PQFDYTRFPLPKADSPKSSSFPRTLLP 15699


>gi|325187025|emb|FR824172.1| Albugo laibachii Nc14, genomic contig
             CONTIG_127_NC14_v4_70157_159
          Length = 70157

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 19/39 (48%), Positives = 23/39 (58%)
 Frame = +1

Query: 489   SKDASSSERGRRSSQMKTPHNPLDSSAPLMKKGKQREIP 527
             S++ SSS+ GR S Q +TP     S   L K G QREIP
Sbjct: 54685 SQNCSSSDHGRLSMQNQTPQ--FHSVLVLNK*GSQREIP 54795


>gi|325179460|emb|FR824046.1| Albugo laibachii Nc14, genomic contig
              CONTIG_1_NC14_v4_580768_240
          Length = 580768

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = +3

Query: 560    VASDDSQDVESGASNQTPSQDNPTGPEKTEESVSSTPVVEGESEEPA-GTEFQRDPEACQ 618
              V  DDS+D E    + TP +DN    E  +E         G+SE+     +   + +   
Sbjct: 330852 VVHDDSEDEEDDRPDSTPIKDNEALNEDDDEEEDEEEEWNGDSEDDEDDADEDENEDGKS 331031

Query: 619    PAPDSATFPKIHSRRFR 635
                 D +T   I++ + R
Sbjct: 331032 TESDKSTLQSINAAKMR 331082


>gi|325184401|emb|FR824104.1| Albugo laibachii Nc14, genomic contig
             CONTIG_59_NC14_v4_105594_236
          Length = 105594

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 24/91 (26%), Positives = 44/91 (48%)
 Frame = -1

Query: 671   KAKTKRRLVLGLREVLKHLKLRKLKCIIISPNCEKTQSKGGLDDTLHTIIDCACEQNIPF 730
             +A   +++  G  E  K L     + II++ + E       L+  LH  + C  ++N+ +
Sbjct: 22596 QAANYKQIKKGANEATKTLNRGISEFIIMAADAEP------LEILLHLPLLCE-DKNVSY 22438

Query: 731   VFALNRKALGRSLNKAVPVSIVGIFSYDGAQ 761
             VF  ++ ALGR+   + PV    I S + +Q
Sbjct: 22437 VFVPSKVALGRACGVSRPVIAASITSNEASQ 22345


>gi|325181994|emb|FR824067.1| Albugo laibachii Nc14, genomic contig
              CONTIG_22_NC14_v4_183579_236
          Length = 183579

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = -2

Query: 681    GLREVLKHLKLRKLKCIIISPNCEKTQ---SKGGLDDTLHTIIDCACEQNIPFVFALNR 736
              G++   KH+   KL C  +   C +T+   S  GL  ++  II+C CE+  P+ F L R
Sbjct: 147665 GIKADSKHVA**KLICYDVE--CHQTK*IASFSGLWGSIAHIINCLCEK*FPYRFRLQR 147495


>gi|325188241|emb|FR824213.1| Albugo laibachii Nc14, genomic contig
            CONTIG_168_NC14_v4_55484_241
          Length = 55484

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = +3

Query: 558  LTVASDDSQDVESGASNQTPSQDNPTGPE-KTEESVSSTPVVE 599
            L+VAS+ ++D  S +S+ +    NP G   +TE+ VS+ P++E
Sbjct: 7380 LSVASNSTEDFFSDSSSLSDVVQNPNGTAIRTEKLVSNLPILE 7508


  Database: A.laibachii_Nc14/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.311    0.126    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,613,104
Number of Sequences: 3816
Number of extensions: 384868
Number of successful extensions: 1640
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 1100
Number of HSP's gapped (non-prelim): 918
length of query: 858
length of database: 10,913,379
effective HSP length: 109
effective length of query: 749
effective length of database: 10,497,435
effective search space: 7862578815
effective search space used: 7862578815
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)