TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) # Homo sapiens # Complete (854 letters) Database: T.congolense/genome.fa 11 sequences; 22,287,946 total letters Searching...........done Score E Sequences producing significant alignments: (bits) Value TcIL3000_10_v2.embl 31 3.3 T.congo.pschr.8 30 4.3 T.congo.pschr.11 30 7.3 T.congo.pschr.5 29 9.6 >TcIL3000_10_v2.embl Length = 3612457 Score = 30.8 bits (68), Expect = 3.3 Identities = 17/50 (34%), Positives = 28/50 (56%) Frame = +2 Query: 302 YVVRQTLSTELSAAPKNVTSMINLKTIASSADPKNVSIPSSEALSSDPSY 351 + RQ+L EL P+NV + + L + SSA P + +P E + S+P + Sbjct: 2069507 FKARQSLLEELRLFPENVDARLLLNEVNSSARP--LLMPPEEVVKSEPLF 2069650 >T.congo.pschr.8 Length = 2451971 Score = 30.4 bits (67), Expect = 4.3 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 5/63 (7%) Frame = +2 Query: 760 HKMVELTVAARQAYKT----MLENVQQELVGEPRPQAPPSLP-TQGPSCPAEDGPPALKE 814 HK +L ++ARQ +K +L + + P APP L T GPS P DG L Sbjct: 273812 HKCTQLAMSARQLHKNITALLLISGHRLSKRNSLPVAPPPLSSTAGPSGPPHDGGRPLSP 273991 Query: 815 KEE 817 E+ Sbjct: 273992 LEQ 274000 >T.congo.pschr.11 Length = 4797796 Score = 29.6 bits (65), Expect = 7.3 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Frame = +3 Query: 773 YKTMLENVQQELVGEPRPQAPPSLP--TQGPSCP 804 Y+T+ + L +PRPQAP LP QGP P Sbjct: 1051149 YRTLSPPLPSSLPLQPRPQAPQVLPYTVQGPETP 1051250 >T.congo.pschr.5 Length = 1517473 Score = 29.3 bits (64), Expect = 9.6 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 1/92 (1%) Frame = +2 Query: 509 DSSAPLMKKGKQREIPKAKKPTSLKKIILKERQERKQRLQENAVSPAFTSDDTQDGESGG 568 DS K+ + + + TS + + RQE + +++ VSP T D+ GE+ Sbjct: 714032 DSCTRRSKRRRA*GMEHGYQKTSRRLLWTSVRQEARSMVEDITVSPLSTYDEQGSGENKS 714211 Query: 569 DDQFPEQ-AELSGPEGMDELISTPSVEDKSEE 599 D E+ +++G + E + + D S+E Sbjct: 714212 DGSTTERVGDINGTACVLEKMLREASPDASDE 714307 Score = 29.3 bits (64), Expect = 9.6 Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 3/141 (2%) Frame = +2 Query: 538 KERQERKQRLQENAVSPAFTSDDTQDGESGGDDQFPEQAELSGPEGMDELISTPSVEDKS 597 +E E E ++ + ++T +GES GD++ E+ E EG + ++ + D Sbjct: 797699 EEDGEESGEETEQSMDNSEEYEETDEGESVGDEEDEEEGEEYEEEGGEAGLAPSTRPDDG 797878 Query: 598 EEPPGTELQRDTEASHLAPN-HTTFPKIHSRRFRDYCSQMLSKEVDACVTDLLK--ELVR 654 + +E DTE + P+ +T K+ S R +L+ E A + L + + Sbjct: 797879 K----SEWFEDTEVNSTRPSLRSTASKVSSSAVR-----ILTDEDFARIRALQRKHQHES 798031 Query: 655 FQDRMYQKDPVKAKTKRRLVL 675 R + ++A+ KRR L Sbjct: 798032 LHSRRKKSKDIEARAKRREAL 798094 Database: T.congolense/genome.fa Posted date: Nov 21, 2011 7:47 PM Number of letters in database: 22,287,946 Number of sequences in database: 11 Lambda K H 0.311 0.128 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,053,776 Number of Sequences: 11 Number of extensions: 287067 Number of successful extensions: 1301 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 1177 Number of HSP's gapped (non-prelim): 246 length of query: 854 length of database: 7,429,315 effective HSP length: 106 effective length of query: 748 effective length of database: 7,428,149 effective search space: 5556255452 effective search space used: 5556255452 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 64 (29.3 bits)