TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) # Homo sapiens # Complete (854 letters) Database: S.arctica/genome.fa 15,618 sequences; 121,588,341 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value supercont1.92 of Sphaeroforma arctica JP610 48 1e-04 supercont1.162 of Sphaeroforma arctica JP610 33 4.4 supercont1.1152 of Sphaeroforma arctica JP610 32 5.8 supercont1.840 of Sphaeroforma arctica JP610 32 5.8 supercont1.1249 of Sphaeroforma arctica JP610 32 9.9 supercont1.522 of Sphaeroforma arctica JP610 32 9.9 >supercont1.92 of Sphaeroforma arctica JP610 Length = 160494 Score = 47.8 bits (112), Expect = 1e-04 Identities = 33/112 (29%), Positives = 59/112 (52%) Frame = +2 Query: 488 ECASGERGRRMSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKIILKERQERKQRL 547 E AS ++GRR + NPLDS+A + ++GK+R K K+PT+++KII +++ KQR Sbjct: 64013 EAASDKKGRRTATA----NPLDSTASVRRRGKERLTAKKKRPTAMRKIIQADKE--KQRK 64174 Query: 548 QENAVSPAFTSDDTQDGESGGDDQFPEQAELSGPEGMDELISTPSVEDKSEE 599 A + T + + E +Q EL + +P++ + +E+ Sbjct: 64175 WRTAAVLSATLEALKQAE------INKQLELDASYEVARQSVSPNLSEMNEQ 64312 Score = 35.4 bits (80), Expect = 0.69 Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 3/47 (6%) Frame = +3 Query: 721 QNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDG---AQDQFHKMVE 764 Q I V+A+ RK+LG L PVSVV I Y G A HK +E Sbjct: 69000 QGIEVVYAMTRKSLGDCLIPKAPVSVVSIHDYSGTHVAYKALHKELE 69140 Score = 33.9 bits (76), Expect = 2.0 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +1 Query: 670 KRRLVLGLREVXXXXXXXXXXCVIISPNCEKIQSKGGLDDTLHTIID 716 K R G+REV CVI+ + E ++ GL+D L T+ID Sbjct: 67708 KCRYAKGIREVQKALKTGVVRCVILPTDVENVRIDNGLNDQLRTLID 67848 Score = 33.5 bits (75), Expect = 2.6 Identities = 15/48 (31%), Positives = 25/48 (52%) Frame = +1 Query: 625 HSRRFRDYCSQMLSKEVDACVTDLLKELVRFQDRMYQKDPVKAKTKRR 672 HS +FR YC ++KE+ A L +E+ + + D KA ++R Sbjct: 66697 HSAKFRGYCRNRVTKELLASTEQLTREISLMHHKKLKVDEAKANYRKR 66840 >supercont1.162 of Sphaeroforma arctica JP610 Length = 129594 Score = 32.7 bits (73), Expect = 4.4 Identities = 20/64 (31%), Positives = 27/64 (42%) Frame = +3 Query: 760 HKMVELTVAARQAYKTMLENVQQELVGEPRPQAPPSLPTQGPSCPAEDGPPALKEKEEPH 819 +K +EL +R TM Q V PRP+A P+ Q +CP P L E Sbjct: 92487 YKAMELRELSRIVINTMKAGPGQGGVTAPRPRATPTTLQQPGACPVPTAPHTLTGTESHQ 92666 Query: 820 YIEI 823 I + Sbjct: 92667 MIRV 92678 >supercont1.1152 of Sphaeroforma arctica JP610 Length = 21143 Score = 32.3 bits (72), Expect = 5.8 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = -3 Query: 73 ASTFPPQYLSSEITLHPYAYSPYTLDSTQNVYSVPGSQYLYNQP 116 A T+P + S PY+ + T +T+N YS G+ Y +P Sbjct: 3840 AKTYPTTFKSHSTIAEPYSITANTYSTTRNTYSTTGNTYSTAKP 3709 >supercont1.840 of Sphaeroforma arctica JP610 Length = 39036 Score = 32.3 bits (72), Expect = 5.8 Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 22/113 (19%) Frame = -3 Query: 37 SSEACVFPSSAATY--YPFVQEPPVTEQKI-----YTEDMAFGASTFPPQYLSSEITLHP 89 SS +CVFP+S Y Y + Q+ P +T + P + ++ + LH Sbjct: 13672 SSHSCVFPTSYPYY*HYKYSQQKPPNYVFTLVCIPHTIPLLLALQVLPTR--TTRLRLHT 13499 Query: 90 YAYSPYTLDSTQN---------------VYSVPGSQYLYNQPSCYRGFQTVKH 127 YSP TLD +N V +P +L + Y GF V H Sbjct: 13498 CVYSPQTLDGVRNFSERRPQTHISRRTTVSQMPSDTHL----TTYHGFTDVLH 13352 >supercont1.1249 of Sphaeroforma arctica JP610 Length = 18587 Score = 31.6 bits (70), Expect = 9.9 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 7/79 (8%) Frame = -2 Query: 43 FPSSAATY-YPFVQEPPVTEQKIYTEDMAFGASTFPPQYLSSEITLHPYAYS------PY 95 +P S T+ YP+ I+T A+ T P Y I HPYAYS PY Sbjct: 13495 YPYSLYTHLYPYSIHIHSYPYSIHTHPYAYSLHTHPYPY---SIHTHPYAYSLYTHLYPY 13325 Query: 96 TLDSTQNVYSVPGSQYLYN 114 ++ YS+ Y Y+ Sbjct: 13324 SIHIHSYPYSIHTHPYAYS 13268 >supercont1.522 of Sphaeroforma arctica JP610 Length = 63712 Score = 31.6 bits (70), Expect = 9.9 Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 26/161 (16%) Frame = +3 Query: 216 FEFTTLDFPELQGAENNMSE--IQKQPKWGPVHSVSTDISLLREV-------VKPAAVLS 266 F + T+ L N S+ ++ +P+ P+ S+S + S++R++ + A + + Sbjct: 27189 FIYVTMAAVTLAERPNQQSQPTLKAKPRPTPLSSLSLE-SIVRDIWNDDEDILSGAVIDA 27365 Query: 267 KGEIVVKNNPNESVTANAATNSPSCT-----RELSWTPMGYVVRQTLS------------ 309 + + S T T+ P R+ S G V +Q + Sbjct: 27366 PTNVTISLPKPASTTLEVETSDPESVLFNKIRKCSIDYRGQVGKQKIGRPRSATTTKASV 27545 Query: 310 TELSAAPKNVTSMINLKTIASSADPKNVSIPSSEALSSDPS 350 + + A P + SM++L +IAS PK S P S+ S PS Sbjct: 27546 SNMEARPSKLISMLSLSSIASPETPK--SRPRSQTCGSKPS 27662 Database: S.arctica/genome.fa Posted date: Nov 21, 2011 7:47 PM Number of letters in database: 121,588,341 Number of sequences in database: 15,618 Lambda K H 0.311 0.128 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 103,204,508 Number of Sequences: 15618 Number of extensions: 1543730 Number of successful extensions: 5345 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 854 Number of HSP's successfully gapped in prelim test: 274 Number of HSP's that attempted gapping in prelim test: 3932 Number of HSP's gapped (non-prelim): 2466 length of query: 854 length of database: 40,529,447 effective HSP length: 118 effective length of query: 736 effective length of database: 38,686,523 effective search space: 28473280928 effective search space used: 28473280928 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 70 (31.6 bits)