TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) # Homo sapiens # Complete (854 letters) Database: P.capsici/genome.fa 917 sequences; 64,023,748 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PHYCAscaffold_12 33 1.4 PHYCAscaffold_52 32 3.2 PHYCAscaffold_2 32 3.2 PHYCAscaffold_1 32 3.2 PHYCAscaffold_84 32 5.5 PHYCAscaffold_271 31 7.1 PHYCAscaffold_54 31 7.1 PHYCAscaffold_40 31 7.1 PHYCAscaffold_43 31 9.3 PHYCAscaffold_21 31 9.3 >PHYCAscaffold_12 Length = 1145657 Score = 33.5 bits (75), Expect = 1.4 Identities = 32/130 (24%), Positives = 53/130 (40%) Frame = +3 Query: 235 EIQKQPKWGPVHSVSTDISLLREVVKPAAVLSKGEIVVKNNPNESVTANAATNSPSCTRE 294 +IQ++P PV +VST + +E A V V++ P E VT P Sbjct: 27120 KIQEKPVVAPV-TVSTKQKVEKETPALAPVA-----VLQTKPQEQVTEKQTAEIP----- 27266 Query: 295 LSWTPMGYVVRQTLSTELSAAPKNVTSMINLKTIASSADPKNVSIPSSEALSSDPSYNKE 354 +T++T PK TS + ++ +PK + SSE P N+ Sbjct: 27267 -----------KTVTTPKLTTPKATTSKV------TTPNPKAAKVSSSELRVKTPLNNES 27395 Query: 355 KHIIHPTQKS 364 H+ P +++ Sbjct: 27396 SHLSPPLERN 27425 >PHYCAscaffold_52 Length = 444141 Score = 32.3 bits (72), Expect = 3.2 Identities = 25/110 (22%), Positives = 53/110 (48%), Gaps = 7/110 (6%) Frame = -2 Query: 505 HNPLDSSAPLMKKGKQREIPKAKKPTSLKKIILKERQERKQRLQ----ENAVSPAFTSDD 560 H+ S++ L + +Q E K+ KP + ++++++ + + L+ E+A + + Sbjct: 156071 HDDQLSASELRLRYQQEERRKSAKPIRINELVIEDYYSQNRSLEGHGDESAGAFLMEPEP 155892 Query: 561 TQDG---ESGGDDQFPEQAELSGPEGMDELISTPSVEDKSEEPPGTELQR 607 +QD + G+D + A S P G + + S+P DK+ P + R Sbjct: 155891 SQDHPQVSTAGEDPWFSSAAPSSPSGPEHMASSP---DKTAMPYNEQAAR 155751 >PHYCAscaffold_2 Length = 1925921 Score = 32.3 bits (72), Expect = 3.2 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = -1 Query: 785 VGEPRPQAPPSLPTQGPSCPAEDGPPALKEKEEPHYIEIW 824 + +P P PP LP + P P PPAL E P +E+W Sbjct: 486440 LADPLP-LPPLLPQRPPRPPDRPLPPALLEPPPPPLLELW 486324 >PHYCAscaffold_1 Length = 2170955 Score = 32.3 bits (72), Expect = 3.2 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Frame = -2 Query: 784 LVGEPRPQAPPSLPTQGPS-CPAEDGPPALKEKEEPHYIEIWKKHL 828 L G P PPSL + PS C A+ P ++ E+ P +W HL Sbjct: 312124 LSGSPGRSFPPSLHSNRPSRCSADHAPLSVSERIYPLDCGVWSSHL 311987 Score = 31.6 bits (70), Expect = 5.5 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 7/59 (11%) Frame = +2 Query: 396 TVQEPPRIED---AEEFPNLAVA---SERRDRIETPKFQSKQQP-QDNFKNNVKKSQLP 447 TV+EPP+IED E P +A A S D + P+ +Q P Q KN+ +K++ P Sbjct: 1374110 TVEEPPKIEDFQIPEPSPKVATARRPSRLSDNEQKPEQDPEQNPEQVEEKNDTEKAKSP 1374286 >PHYCAscaffold_84 Length = 182275 Score = 31.6 bits (70), Expect = 5.5 Identities = 14/37 (37%), Positives = 23/37 (62%) Frame = +3 Query: 720 EQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGAQ 756 ++N+P+VF ++ ALGR+ + PV I S D +Q Sbjct: 157716 DKNVPYVFVPSKVALGRACGVSRPVIAASITSNDASQ 157826 >PHYCAscaffold_271 Length = 8050 Score = 31.2 bits (69), Expect = 7.1 Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 3/95 (3%) Frame = +1 Query: 526 AKKPTSLKKIILKERQERKQRLQE--NAVSPAFTSDDTQDG-ESGGDDQFPEQAELSGPE 582 A +PT + Q + QE NA + T DG +SGGDDQ E + SG Sbjct: 5617 APQPTPASTPASNDEQSKSTDTQEWTNAPQSPPANTPTNDGKQSGGDDQ-SENDDQSG-- 5787 Query: 583 GMDELISTPSVEDKSEEPPGTELQRDTEASHLAPN 617 G D+ + S PP T T P+ Sbjct: 5788 GDDQSEEDDNASQSSNTPPSTPAPTQTSNDQWTPS 5892 >PHYCAscaffold_54 Length = 427428 Score = 31.2 bits (69), Expect = 7.1 Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 2/146 (1%) Frame = +1 Query: 392 YEVLTVQEPPR--IEDAEEFPNLAVASERRDRIETPKFQSKQQPQDNFKNNVKKSQLPVQ 449 +++ T+ + PR + A++F N ER I + +S + N +NV ++ ++ Sbjct: 415501 FQIKTLADQPRATMTHAQKFSNARALCERIQGIMASQTRSGFEANFNILSNV---EVMIR 415671 Query: 450 LDLGGMLTALEKKQHSQHAKQXXXXXXXXXXXXXXXXXECASGERGRRMSQMKTPHNPLD 509 G L + K+ AK+ ECAS ER R Sbjct: 415672 QGRGEELADIVKQMSVSSAKKV----------------ECASTERKREF---------FF 415776 Query: 510 SSAPLMKKGKQREIPKAKKPTSLKKI 535 SSAP + ++R+ KAK+ +L K+ Sbjct: 415777 SSAPANLQVERRKAGKAKRSQTLTKV 415854 >PHYCAscaffold_40 Length = 570383 Score = 31.2 bits (69), Expect = 7.1 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 3/64 (4%) Frame = +1 Query: 396 TVQEPPRIEDAEEFPNL---AVASERRDRIETPKFQSKQQPQDNFKNNVKKSQLPVQLDL 452 T++ R EDA EFP + A +TP K + D +++K P+Q Sbjct: 241294 TIEHAQRFEDAREFPKSKKGSTAGTNAQSRKTPYLLGKGRGTDAVTSSLKTPSKPIQNSA 241473 Query: 453 GGML 456 GG + Sbjct: 241474 GGTM 241485 >PHYCAscaffold_43 Length = 531961 Score = 30.8 bits (68), Expect = 9.3 Identities = 16/38 (42%), Positives = 19/38 (50%) Frame = +2 Query: 781 QQELVGEPRPQAPPSLPTQGPSCPAEDGPPALKEKEEP 818 Q + G PR APP P P P +D PP L + EP Sbjct: 466178 QPGVPGRPRG-APPGPPKDPPPQPPKDAPPPLPVRSEP 466288 >PHYCAscaffold_21 Length = 930814 Score = 30.8 bits (68), Expect = 9.3 Identities = 13/21 (61%), Positives = 17/21 (80%) Frame = -3 Query: 734 LGRSLNKAVPVSVVGIFSYDG 754 LGR+L+ ++PVS V IF YDG Sbjct: 524321 LGRALDVSIPVSTVKIFHYDG 524259 Database: P.capsici/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 64,023,748 Number of sequences in database: 917 Lambda K H 0.311 0.128 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,166,145 Number of Sequences: 917 Number of extensions: 760521 Number of successful extensions: 4107 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 64 Number of HSP's that attempted gapping in prelim test: 2857 Number of HSP's gapped (non-prelim): 2336 length of query: 854 length of database: 21,341,249 effective HSP length: 114 effective length of query: 740 effective length of database: 21,236,711 effective search space: 15715166140 effective search space used: 15715166140 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 68 (30.8 bits)