TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) # Homo sapiens # Complete (854 letters) Database: L.tarentolae/genome.fa 7267 sequences; 31,598,840 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Lt_contig5659 | | 1 to 12180 33 0.67 Lt_contig4556 | | 1 to 6916 33 0.87 Lt_contig437 | | 1 to 12632 31 3.3 Lt_contig346 | | 1 to 2346 31 3.3 Lt_contig375 | | 1 to 8938 31 4.3 Lt_contig5830 | | 1 to 9230 30 5.6 Lt_contig426 | | 1 to 12442 30 5.6 Lt_contig83 | | 1 to 17323 30 5.6 Lt_contig1551 | | 1 to 21101 30 7.4 Lt_contig1050 | | 1 to 13608 30 7.4 Lt_contig986 | | 1 to 19279 30 7.4 >Lt_contig5659 | | 1 to 12180 Length = 12180 Score = 33.5 bits (75), Expect = 0.67 Identities = 18/41 (43%), Positives = 22/41 (53%) Frame = +2 Query: 489 CASGERGRRMSQMKTPHNPLDSSAPLMKKGKQREIPKAKKP 529 CASG +GRR +Q KT H+ +SAPL KA P Sbjct: 5534 CASGNKGRRRNQ-KTKHSKSTASAPLPTNASLEVFTKASTP 5653 >Lt_contig4556 | | 1 to 6916 Length = 6916 Score = 33.1 bits (74), Expect = 0.87 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = +3 Query: 260 KPAAVLSKGEIVVKNNPNESVTANAATNSPSCTRELSWT 298 KPA+ K V+ + P + TA AAT SP R+ +WT Sbjct: 654 KPASKKGKTGDVLMSRPEDDTTATAATVSPRVIRQRTWT 770 >Lt_contig437 | | 1 to 12632 Length = 12632 Score = 31.2 bits (69), Expect = 3.3 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 2/102 (1%) Frame = -2 Query: 218 FTTLDFPELQGAENNMSEIQKQPKWGPVHSVSTDISLLREVVKPAAVLSKGEIVVKNNPN 277 F +L FPELQG ++E + + VH+V++D A S +V + Sbjct: 12010 FDSLPFPELQGVLGRITERSETAQSTSVHTVASDFYAFSAA---ANTESSRRVVSRGKGP 11840 Query: 278 ESVTANAATNSPSCTRELSWTPMGYVVRQT--LSTELSAAPK 317 E+ + N ++ + T E Y R + L+ E S K Sbjct: 11839 ETFSMNTIVSTANATMEPRGDAFMYCARYSTGLNNETSVHVK 11714 >Lt_contig346 | | 1 to 2346 Length = 2346 Score = 31.2 bits (69), Expect = 3.3 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%) Frame = +2 Query: 269 EIVVKNNPNESVTANAATNSPSCTRELSWTPMGYVVRQTLSTELSAAPKNVTSMINLKTI 328 E KNN + ++TA +P C S T S+ S+AP + +S + + Sbjct: 1940 EWAAKNNVSLTITAQPEVLAPDCATAHSCTTPSPSSSSAPSSSSSSAPSSSSSAPSSSSS 2119 Query: 329 ASSADPKNVSIPSSEAL-SSDPSYNKEKHIIHPTQKSKASQGS 370 A+ + + + SS A SS S P+ S A S Sbjct: 2120 AAPSSSSSAPLSSSSAAPSSSSSAPSSSSSAAPSSSSSAPSSS 2248 >Lt_contig375 | | 1 to 8938 Length = 8938 Score = 30.8 bits (68), Expect = 4.3 Identities = 15/41 (36%), Positives = 17/41 (41%) Frame = +1 Query: 788 PRPQAPPSLPTQGPSCPAEDGPPALKEKEEPHYIEIWKKHL 828 P P PP P + P DG AL H IE W+ L Sbjct: 2938 PPPPPPPPPPPPPTASPDMDGDSALSTTSTEHLIEQWRHRL 3060 >Lt_contig5830 | | 1 to 9230 Length = 9230 Score = 30.4 bits (67), Expect = 5.6 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Frame = +1 Query: 790 PQAPPSLPTQGP--SCPAEDGPPALKEKEEPH 819 P PPSLP QG SCP +GP + PH Sbjct: 490 PSLPPSLPPQGS*RSCPMLNGPRSAPWMVRPH 585 >Lt_contig426 | | 1 to 12442 Length = 12442 Score = 30.4 bits (67), Expect = 5.6 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 5/97 (5%) Frame = +1 Query: 261 PAAVLSKGEIVVKNNPNE----SVTANAATNSPSCTRELSWTPMGYVV-RQTLSTELSAA 315 P+A GE P + + ANA T+ + + +L TP+ V R S+ S + Sbjct: 7129 PSAASFSGESAEPAYPRQVPVVCIRANAQTSHTAGSLKLEQTPLPMVTPRSEASSAASPS 7308 Query: 316 PKNVTSMINLKTIASSADPKNVSIPSSEALSSDPSYN 352 P +S +N A++ +P ++ EAL++ S N Sbjct: 7309 PSVTSSTVNTPA-ATTTEPHHLPSTYGEALNTVSSRN 7416 >Lt_contig83 | | 1 to 17323 Length = 17323 Score = 30.4 bits (67), Expect = 5.6 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +1 Query: 788 PRPQAPPSLPTQGPSCPAEDGPPALKEKEEPHYIEI 823 P P AP + T PSCP +G P K + Y+E+ Sbjct: 8107 PTPSAPVAHCTLWPSCPCLEGCPVAVYKGDDLYLEV 8214 >Lt_contig1551 | | 1 to 21101 Length = 21101 Score = 30.0 bits (66), Expect = 7.4 Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 2/85 (2%) Frame = -3 Query: 546 RLQENAVSPAFTSDDTQDGESGGDDQFPEQAELSGPEGMDELISTPSVEDKSEEPPGTEL 605 RL +A P T D Q + P G+D S+P+ S + Sbjct: 18351 RLWNSAPPPQTTC*D*QPVPRSTAQSTQRAGHAAAPAGLDRRRSSPACYPHSAHVHVRSI 18172 Query: 606 QRDTEASHLAP--NHTTFPKIHSRR 628 RDT SH AP + P +HS R Sbjct: 18171 PRDTPPSHNAPDEHRIASPPLHSVR 18097 >Lt_contig1050 | | 1 to 13608 Length = 13608 Score = 30.0 bits (66), Expect = 7.4 Identities = 38/163 (23%), Positives = 64/163 (39%), Gaps = 1/163 (0%) Frame = -3 Query: 21 KPFVPRFAGLNVAWLESSEACVFPSSA-ATYYPFVQEPPVTEQKIYTEDMAFGASTFPPQ 79 K VP + E S+ CVF ++A T + P+ ++ + + + P Sbjct: 12223 KTDVPAADTMEPLGTEKSDTCVFQAAAIVTRALWSTIRPILRDHLHATNSSVVPAHVPVV 12044 Query: 80 YLSSEITLHPYAYSPYTLDSTQNVYSVPGSQYLYNQPSCYRGFQTVKHRNENTCPLPQEM 139 + ++ + + PYT DST N++S P + + + PS RG +P+ Sbjct: 12043 WAMADPRMLS-GFLPYTSDSTGNIFS-PYACPVPDSPSSMRGSDEAAVVERWVRLVPRTA 11870 Query: 140 KALFXXXXXXXXXXXXQQKFDSERADGTISSEIKSARGSHHLS 182 ++ S A+GT S E S RGS LS Sbjct: 11869 FYMYDPSTSSAAVQETLGVLQSHLAEGTQSQE-SSPRGSLRLS 11744 >Lt_contig986 | | 1 to 19279 Length = 19279 Score = 30.0 bits (66), Expect = 7.4 Identities = 76/411 (18%), Positives = 148/411 (36%), Gaps = 12/411 (2%) Frame = -3 Query: 209 VSTSKPEFEFTTLDFPELQGAE-NNMSEIQKQPKWGPVHSVSTDISLLREVVKPAAVLSK 267 VS E E TT++ P Q +E NN+ ++ ++ V + + +V + ++ Sbjct: 7160 VSVGTGELEGTTVEAPATQDSEGNNIISWNQEVRFIEVDPAEKTVEV--QVYEKERLICV 6987 Query: 268 GEIVVKNNPNESVTANAATNSPSCTRELSWTPMGYVVRQTLSTELSAAPKNVTSMINLKT 327 G + +N +E V ++ + E G +V S + AP+ V I + Sbjct: 6986 GTCELDDN-DEGVVIVQMYHAANLNEEA-----GEIVG---SYKRLHAPRTVEDGIYRQH 6834 Query: 328 IASSADPKNVSIPSSEALSSDPSYNKEKHIIHPTQKSKASQGSDLEQNEAXXXXXXXXXX 387 A+ P +D +++ + T+ +++ D E+ E Sbjct: 6833 RAAEKGPYK---------GADEEDEEQEELHQATEHDESNVHGDEEEEEE---------- 6711 Query: 388 XXXXYEVLTVQEPPRIEDAEEFPNLAVASERRDRIETPKFQSKQQPQDNFKNNVKKSQLP 447 +V Q PP E A N ++ E + +T ++++Q+ + + K Sbjct: 6710 -----QVHVSQVPPTDERAMSI-NEDLSEEEKGAEQTAPYETQQRQRSEPQEQESKED-- 6555 Query: 448 VQLDLGGMLTALEKKQHSQHAKQXXXXXXXXXXXXXXXXXECASGERGRRMSQMKTPHNP 507 Q D+ + E++Q Q ++ E + SQ + Sbjct: 6554 -QQDVPHQQESREEEQLGQTQREKELQ------------------EGAEQQSQPERTEEE 6432 Query: 508 LDSSAPLMKKGKQREIPKAKKPTSLKKIILKERQERKQRLQENAVSPAFTSDDTQDGESG 567 +S PL + ++ P+A++ + Q + + E P +D Q Sbjct: 6431 ENSQPPLEEMSEEVSQPQAEEE--------ENSQPPLEEMSEEVSQPQAEEEDVQQS--- 6285 Query: 568 GDDQFPEQAELSGPEGMDELISTPSVEDK-----------SEEPPGTELQR 607 + Q E P+G +ELI T E+K + EP +LQR Sbjct: 6284 ----YAAQEEAPEPKGEEELIETQKPEEKDLQRSYAAQEEAAEPEEEDLQR 6144 Database: L.tarentolae/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 31,598,840 Number of sequences in database: 7267 Lambda K H 0.311 0.128 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,501,172 Number of Sequences: 7267 Number of extensions: 487208 Number of successful extensions: 3012 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 1001 Number of HSP's successfully gapped in prelim test: 209 Number of HSP's that attempted gapping in prelim test: 1832 Number of HSP's gapped (non-prelim): 1568 length of query: 854 length of database: 10,532,946 effective HSP length: 108 effective length of query: 746 effective length of database: 9,748,110 effective search space: 7272090060 effective search space used: 7272090060 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 65 (29.6 bits)