TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) # Homo sapiens # Complete (854 letters) Database: L.donovani_BPK282A1/genome.fa 36 sequences; 32,444,998 total letters Searching....................................done Score E Sequences producing significant alignments: (bits) Value contig_32 38 0.039 contig_36 34 0.56 contig_18 32 1.6 contig_16 32 1.6 contig_34 31 3.7 contig_35 31 4.8 contig_14 31 4.8 contig_11 30 6.2 contig_12 30 8.2 >contig_32 Length = 1559911 Score = 37.7 bits (86), Expect = 0.039 Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 1/87 (1%) Frame = -1 Query: 55 QEPPVTEQKIYTEDMAFGASTFPPQYLSSEITLHPYAYSPYTLDSTQNVYSVPGSQYLYN 114 + PP+ +Q + F S P + E HP +DSTQ YS P + N Sbjct: 1182883 RSPPLVKQHL------FRGSGNPKNTMRREAKRHP-------IDSTQKHYSTPKASEAQN 1182743 Query: 115 QPSC-YRGFQTVKHRNENTCPLPQEMK 140 Q S R QT + RNE PLP + + Sbjct: 1182742 QVSINQRRLQTFQQRNEQPPPLPLQRR 1182662 Score = 30.0 bits (66), Expect = 8.2 Identities = 15/26 (57%), Positives = 17/26 (65%) Frame = +1 Query: 788 PRPQAPPSLPTQGPSCPAEDGPPALK 813 P PQAP SLP + P CPA D AL+ Sbjct: 1483102 PPPQAPISLPVESP-CPAADKARALE 1483176 >contig_36 Length = 2713248 Score = 33.9 bits (76), Expect = 0.56 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 5/95 (5%) Frame = +1 Query: 205 IAKNVSTSKPEFEFTTLDFPELQGAENNMSEIQKQPKWGPVHSVSTDISLLREVVKPAAV 264 + K V T+ + + D +L+GA N M ++ +Q G + +LR+V + Sbjct: 423292 VKKMVLTNASGEQVSLKDLSDLEGALNAMEKVYRQKAKG----AGEKVDMLRKVAPEPVI 423459 Query: 265 LSKGEIVVKNNPNESVTA-----NAATNSPSCTRE 294 +S K+ +TA NAA+NS C+R+ Sbjct: 423460 VSSS--AAKSQGTTPLTAGEDSGNAASNSTGCSRQ 423558 >contig_18 Length = 735640 Score = 32.3 bits (72), Expect = 1.6 Identities = 20/77 (25%), Positives = 38/77 (49%) Frame = +1 Query: 491 SGERGRRMSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKIILKERQERKQRLQEN 550 + ++ RR ++ + + P + K+G+ + + KK + K + + RQ RKQR N Sbjct: 95077 ANKQQRRRTRKRREYKPPSLKKKMKKRGRAGKKNEVKKKRNTKVLSTETRQTRKQR---N 95247 Query: 551 AVSPAFTSDDTQDGESG 567 A + A +T +G G Sbjct: 95248 A*TEAGKKKETGEGREG 95298 >contig_16 Length = 698406 Score = 32.3 bits (72), Expect = 1.6 Identities = 12/43 (27%), Positives = 26/43 (60%) Frame = -1 Query: 171 EIKSARGSHHLSIYAENSLKSDGYHKRTDRKSRIIAKNVSTSK 213 ++ S G H ++I+A N+L+ +G H+ D ++ +++ SK Sbjct: 562395 QLNSLMGDHPMNIFASNALRGEGIHEGMDWLRSVMLRHLEQSK 562267 >contig_34 Length = 1750858 Score = 31.2 bits (69), Expect = 3.7 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -3 Query: 788 PRPQAPPSLPTQGPSCPAEDGPPALKEKEEP 818 P P P+LPT P+ P D PP K + P Sbjct: 572414 PPPHRTPNLPTMCPTAPRGDAPPTPKGGQTP 572322 >contig_35 Length = 2113966 Score = 30.8 bits (68), Expect = 4.8 Identities = 36/161 (22%), Positives = 64/161 (39%), Gaps = 1/161 (0%) Frame = +1 Query: 168 ISSEIKSARGSHHLSIYAENSLKSDGYHKRTDRKSRIIAKNVSTSKPEFEFTTLDFPELQ 227 + + +K RGS + +E+S +SDG D + + SKP TL F + Sbjct: 959026 VKNAVKKNRGSMSDDLISEHSFESDGSDSTND--------DGAGSKPRLGGGTLLFTAPE 959181 Query: 228 GAENNMSEIQKQPKWGPVHSVSTDISLLREVVKPAAVLSKGEIVVKNNPNESVTANAATN 287 ++++++ P V ++ + + + P N V AN T Sbjct: 959182 LFDSSVNKKLLDPHLTDVWALGVTLYCMLVGMSP----------FFGNTYADVRANILTQ 959331 Query: 288 S-PSCTRELSWTPMGYVVRQTLSTELSAAPKNVTSMINLKT 327 P C + + TP+ R L+ L+ P N S+ LK+ Sbjct: 959332 RYPWCGKTIYGTPLAAEWRVVLNGLLAKNPNNRWSLARLKS 959454 >contig_14 Length = 645099 Score = 30.8 bits (68), Expect = 4.8 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 4/39 (10%) Frame = -3 Query: 784 LVGEPRPQ-APPSL---PTQGPSCPAEDGPPALKEKEEP 818 L G P PQ APPSL P + PSC PP +++ P Sbjct: 491575 LHGFPAPQRAPPSLLASPPEQPSCSRGPAPPTTSQQQRP 491459 >contig_11 Length = 580223 Score = 30.4 bits (67), Expect = 6.2 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 4/97 (4%) Frame = +2 Query: 224 PELQGAENNMSEIQKQPKWGPVHSVSTDISLLREVVKPAAVLSKGEIVVKNNP----NES 279 P+ G E++ W P+HS+ T ++LR + A+ + +V + P Sbjct: 236891 PKSAGGSRAAEEVRLSASWLPMHSMKTRRAVLRRSIAEKAIA*RRAVVPLDTPPSQLGRR 237070 Query: 280 VTANAATNSPSCTRELSWTPMGYVVRQTLSTELSAAP 316 V++ AA W Y R+TLS S P Sbjct: 237071 VSSRAAVR--YALPVFMWVCFRY-ARRTLSLSYSLPP 237172 >contig_12 Length = 569561 Score = 30.0 bits (66), Expect = 8.2 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 3/78 (3%) Frame = -1 Query: 561 TQDGESGGDDQFPEQAELSGPEGMDELISTPSVEDKSEEPPGTELQRDTE---ASHLAPN 617 T SGG QFP ++ P D STPS + + + +RD +H AP+ Sbjct: 121070 TVRASSGGTKQFPPRSSAPAPPPSDR--STPSPSPRHAQMQSSCTRRDLPRPLPTHAAPS 120897 Query: 618 HTTFPKIHSRRFRDYCSQ 635 T P + RR CS+ Sbjct: 120896 PCT-PVLRCRR*GGPCSE 120846 Database: L.donovani_BPK282A1/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 32,444,998 Number of sequences in database: 36 Lambda K H 0.311 0.128 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,848,163 Number of Sequences: 36 Number of extensions: 526369 Number of successful extensions: 3607 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 3373 Number of HSP's gapped (non-prelim): 854 length of query: 854 length of database: 10,814,999 effective HSP length: 109 effective length of query: 745 effective length of database: 10,811,075 effective search space: 8054250875 effective search space used: 8054250875 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 65 (29.6 bits)