TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) #
Homo sapiens # Complete
         (854 letters)

Database: I.multifiliis_strain_G5/genome.fa 
           2017 sequences; 48,799,969 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|340501198|gb|GL984300.1| Ichthyophthirius multifiliis unplace...    47   1e-04
gi|340507904|gb|GL983342.1| Ichthyophthirius multifiliis unplace...    31   7.1  
gi|340500671|gb|GL984354.1| Ichthyophthirius multifiliis unplace...    30   9.2  
gi|340506554|gb|GL983607.1| Ichthyophthirius multifiliis unplace...    30   9.2  

>gi|340501198|gb|GL984300.1| Ichthyophthirius multifiliis unplaced
             genomic scaffold scaff_1120509251339, whole genome shotgun
             sequence
          Length = 79869

 Score = 46.6 bits (109), Expect = 1e-04
 Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 6/132 (4%)
 Frame = -1

Query: 640   EVDACVTDLLKELVRFQDRMYQKDPVKAKTKRRLVLGLREVXXXXXXXXXX----CVIIS 695
             E+D  +  L+ EL   Q     K+P KAK  +R+V G REV              C+I++
Sbjct: 48732 EIDNQILILINELAYKQAMKKLKEPKKAK--KRIVAGFREVLSALKSSNKDRKPKCIIVA 48559

Query: 696   PNCEKIQSKGGLDDTLHTIIDYACEQNIPFVFALNRKALGRSLN-KAVP-VSVVGIFSYD 753
              N        G D  +  II  A  +NI  + A NR  LG++   K  P +SVV + +Y+
Sbjct: 48558 LNL*ICPLDNGSD*LVV*II*LA*SKNITVIHACNRARLGKAFTGKFGPRISVVAVLNYE 48379

Query: 754   GAQDQFHKMVEL 765
             G  + F  +++L
Sbjct: 48378 GMNE*FKDLMKL 48343


>gi|340507904|gb|GL983342.1| Ichthyophthirius multifiliis unplaced
           genomic scaffold scaff_1120509249881, whole genome
           shotgun sequence
          Length = 5146

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = -1

Query: 621 FPKIHS--RRFRDYCSQMLSK-EVDACVTDLLKELVRFQDRMYQKDPVKAKTKRRLV 674
           F  +H   +  R Y     SK  +    T+LLK  +  +D+ Y+KDP   K  +RL+
Sbjct: 484 FKHVHDDGKNSRIYVQNYFSKITIGITDTNLLKAFISVEDKYYEKDPYFTKALKRLM 314


>gi|340500671|gb|GL984354.1| Ichthyophthirius multifiliis unplaced
             genomic scaffold scaff_1120509251393, whole genome shotgun
             sequence
          Length = 34020

 Score = 30.4 bits (67), Expect = 9.2
 Identities = 18/80 (22%), Positives = 35/80 (43%)
 Frame = -1

Query: 676   GLREVXXXXXXXXXXCVIISPNCEKIQSKGGLDDTLHTIIDYACEQNIPFVFALNRKALG 735
             G+ EV           VI++ +C+ ++    L            E+N+P+ F  ++ ALG
Sbjct: 33201 GVNEVLKCLNKGVSELVILAADCDPLEIVMNLPGECE-------EKNVPYCFVSSKSALG 33043

Query: 736   RSLNKAVPVSVVGIFSYDGA 755
             R+     P+    I  ++G+
Sbjct: 33042 RACGIKRPIVAATIILHEGS 32983


>gi|340506554|gb|GL983607.1| Ichthyophthirius multifiliis unplaced
             genomic scaffold scaff_1120509250452, whole genome shotgun
             sequence
          Length = 47479

 Score = 30.4 bits (67), Expect = 9.2
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 630   RDYCSQMLSK-EVDACVTDLLKELVRFQDRMYQKDPVKAKTKRRLV 674
             R Y     SK  +     DLLK  +  +DR Y+KDP      +RL+
Sbjct: 46190 RIYVQNYFSKIRIGIVEVDLLKAFINIEDRYYKKDPYFTNPIKRLI 46327


  Database: I.multifiliis_strain_G5/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 48,799,969
  Number of sequences in database:  2017
  
Lambda     K      H
   0.311    0.128    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,581,752
Number of Sequences: 2017
Number of extensions: 288612
Number of successful extensions: 364
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 336
Number of HSP's gapped (non-prelim): 30
length of query: 854
length of database: 16,266,656
effective HSP length: 112
effective length of query: 742
effective length of database: 16,040,752
effective search space: 11902237984
effective search space used: 11902237984
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 67 (30.4 bits)