TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) # Homo sapiens # Complete (854 letters) Database: G.niphandrodes/genome.fa 3680 sequences; 15,362,869 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|338240845|gb|AFNH01002744.1| Gregarina niphandrodes asmbl.346... 34 0.19 gi|338242515|gb|AFNH01001907.1| Gregarina niphandrodes asmbl.269... 31 1.6 gi|338242902|gb|AFNH01001714.1| Gregarina niphandrodes asmbl.251... 31 1.6 gi|338241344|gb|AFNH01002493.1| Gregarina niphandrodes asmbl.322... 30 2.8 gi|338241061|gb|AFNH01002636.1| Gregarina niphandrodes asmbl.336... 30 4.7 gi|338241069|gb|AFNH01002632.1| Gregarina niphandrodes asmbl.335... 29 8.0 gi|338241322|gb|AFNH01002504.1| Gregarina niphandrodes asmbl.323... 29 8.0 >gi|338240845|gb|AFNH01002744.1| Gregarina niphandrodes asmbl.3462, whole genome shotgun sequence Length = 43533 Score = 34.3 bits (77), Expect = 0.19 Identities = 29/113 (25%), Positives = 45/113 (39%) Frame = -2 Query: 509 DSSAPLMKKGKQREIPKAKKPTSLKKIILKERQERKQRLQENAVSPAFTSDDTQDGESGG 568 D S P +K E+ + S ++++K + R Q + E S T+DD SG Sbjct: 38873 DESNPRVKP----EVIRPAVRRSYAQVLIKSKVNRSQVVTEPVSSETATADDAVSHPSGT 38706 Query: 569 DDQFPEQAELSGPEGMDELISTPSVEDKSEEPPGTELQRDTEASHLAPNHTTF 621 +D F E +S V D E TEL+ ++A P + F Sbjct: 38705 EDVFQEP------------VSREEVADADELRSSTELRTVSDAHSTGPASSIF 38583 >gi|338242515|gb|AFNH01001907.1| Gregarina niphandrodes asmbl.2690, whole genome shotgun sequence Length = 60929 Score = 31.2 bits (69), Expect = 1.6 Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 1/112 (0%) Frame = -3 Query: 247 SVSTDISLLREVVKPAAV-LSKGEIVVKNNPNESVTANAATNSPSCTRELSWTPMGYVVR 305 +V +SLL + +V +K +V+ P + +A + +C RE W P + Sbjct: 30252 AVDALLSLLSSPFQNVSVNCNKATVVIWQAPPD---VSADSRRLNCERETRWQPALALCA 30082 Query: 306 QTLSTELSAAPKNVTSMINLKTIASSADPKNVSIPSSEALSSDPSYNKEKHI 357 LST+ + P++++ I L+T+ N+ + S S DP+ N + I Sbjct: 30081 TGLSTQGTLVPRSLSGTILLQTM-------NIHLASP---SPDPTINARRRI 29956 >gi|338242902|gb|AFNH01001714.1| Gregarina niphandrodes asmbl.2512, whole genome shotgun sequence Length = 28202 Score = 31.2 bits (69), Expect = 1.6 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 12/58 (20%) Frame = -2 Query: 760 HKMVELTVAARQAYKTMLENVQQELVGEPRPQAP----------PSLPTQG--PSCPA 805 H+ T AARQ ++M++ L+G+ RP P SLP++G PS P+ Sbjct: 9244 HRSPSGTTAARQQIESMVQQTSSTLIGQCRPSLPEPPTHPERWVDSLPSKGLLPSSPS 9071 >gi|338241344|gb|AFNH01002493.1| Gregarina niphandrodes asmbl.3228, whole genome shotgun sequence Length = 8815 Score = 30.4 bits (67), Expect = 2.8 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Frame = -2 Query: 788 PRPQAPPSLPTQGPSCPAEDGPPA-LKEKEEPH 819 P P++PP P + S PA GPPA + EPH Sbjct: 4806 PPPRSPPRSPPRSCSRPAGPGPPASCRVPAEPH 4708 >gi|338241061|gb|AFNH01002636.1| Gregarina niphandrodes asmbl.3361, whole genome shotgun sequence Length = 7502 Score = 29.6 bits (65), Expect = 4.7 Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 1/100 (1%) Frame = -3 Query: 269 EIVVKNNPNESVTANAATNSPSCTR-ELSWTPMGYVVRQTLSTELSAAPKNVTSMINLKT 327 E + P+ +TAN A SPS + E W + R +LS AP + TS+ + Sbjct: 5085 ESTTSDGPSSELTANPAKLSPSNSEPEPPWHSLLKPSRHSLSI---TAPSSSTSVST*SS 4915 Query: 328 IASSADPKNVSIPSSEALSSDPSYNKEKHIIHPTQKSKAS 367 SS P S SS + PS + PT S S Sbjct: 4914 ATSSPPPA*PSATSSSPPA*SPS*SSATSSSPPT*SSTTS 4795 >gi|338241069|gb|AFNH01002632.1| Gregarina niphandrodes asmbl.3357, whole genome shotgun sequence Length = 19635 Score = 28.9 bits (63), Expect = 8.0 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +1 Query: 57 PPVTEQKIYTEDMAFGASTFPPQYLSSEIT 86 P V + ++ +D+ F S PP YLSS T Sbjct: 9046 PAVCDPEVICDDLTFAQSPTPPSYLSSRNT 9135 >gi|338241322|gb|AFNH01002504.1| Gregarina niphandrodes asmbl.3238, whole genome shotgun sequence Length = 11697 Score = 28.9 bits (63), Expect = 8.0 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%) Frame = +1 Query: 44 PSSAATYYPFVQEPPVTEQKIYTEDMAFGASTFPPQYLSSEITLHPYAYSPYTLDSTQNV 103 P A PF+ EPP T +F A++ P+ ++E T P A+SP ++ S V Sbjct: 4135 PGPLAGAAPFLAEPPATSPSFPATSPSFPATS--PETAAAE-TATPEAWSPMSMMSGTGV 4305 Query: 104 YS-VPGSQYLYNQPSCY 119 S P + + QP + Sbjct: 4306 RSAAPVAALIDCQPRAF 4356 Database: G.niphandrodes/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 15,362,869 Number of sequences in database: 3680 Lambda K H 0.311 0.128 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,600,475 Number of Sequences: 3680 Number of extensions: 223828 Number of successful extensions: 1656 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 658 Number of HSP's successfully gapped in prelim test: 100 Number of HSP's that attempted gapping in prelim test: 756 Number of HSP's gapped (non-prelim): 1167 length of query: 854 length of database: 5,120,956 effective HSP length: 103 effective length of query: 751 effective length of database: 4,741,916 effective search space: 3561178916 effective search space used: 3561178916 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 62 (28.5 bits)