TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) # Homo sapiens # Complete (854 letters) Database: F.cylindrus/genome.fa 271 sequences; 80,540,407 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_6 50 2e-05 scaffold_66 35 0.62 scaffold_3 33 2.4 scaffold_5 33 3.1 scaffold_87 32 4.0 scaffold_25 32 6.9 scaffold_18 32 6.9 scaffold_7 32 6.9 scaffold_1 31 9.0 >scaffold_6 Length = 2967614 Score = 49.7 bits (117), Expect = 2e-05 Identities = 20/58 (34%), Positives = 37/58 (63%) Frame = -1 Query: 705 GGLDDTLHTIIDYACEQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGAQDQFHKM 762 G +D+ L IID A + +P F +++LG+++ K++ ++V+GI + DGA F K+ Sbjct: 2444453 GVIDEKLQEIIDLAKSEGVPLFFEFTKRSLGKAIGKSIKIAVIGIQNADGAHQPFKKL 2444280 Score = 38.5 bits (88), Expect = 0.056 Identities = 21/51 (41%), Positives = 31/51 (60%) Frame = -2 Query: 630 RDYCSQMLSKEVDACVTDLLKELVRFQDRMYQKDPVKAKTKRRLVLGLREV 680 R+Y S + V + ++L+EL+R Q R + KA KRR+V+GLREV Sbjct: 2444761 REYASTTNDERVRPLLAEMLRELMRLQKRAIEDKNTKA--KRRMVMGLREV 2444615 Score = 35.0 bits (79), Expect = 0.62 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 2/48 (4%) Frame = -2 Query: 516 KKGKQREIPKAKKPTSLKKIILKERQERKQRL--QENAVSPAFTSDDT 561 KKG+QR P+ KK T+LKK +L+ER ++ + L +E+ S +D T Sbjct: 2446444 KKGRQRVAPRKKKFTALKKKVLQERLDKWRELHPEESDESQKRKNDST 2446301 >scaffold_66 Length = 283846 Score = 35.0 bits (79), Expect = 0.62 Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 2/90 (2%) Frame = -2 Query: 524 PKAKKPTSLKKIILKERQERKQRLQENAVSPAFTSDDTQDGESGGDDQFPEQAELSGPEG 583 P + P ++ +++++ + + R++ PA T D + +DQ E+ + GP Sbjct: 116241 PAVEAPVVIEDPVVEDQADEEARVE----GPAVTEDPVVIEDPLVEDQANEEPSVEGPAV 116074 Query: 584 MDE--LISTPSVEDKSEEPPGTELQRDTEA 611 ++ +I P VED+++E P + TEA Sbjct: 116073 TEDPVVIEDPLVEDQADEEPAVKGPAVTEA 115984 >scaffold_3 Length = 3437899 Score = 33.1 bits (74), Expect = 2.4 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%) Frame = +1 Query: 519 KQREIPKAKKPTSLKKIILKERQ--ERKQRLQENAVSPAFTSDDTQDGESGGDD 570 KQ E+ K + +K+ +++RQ ERK R + + P+ +SDD +D E +D Sbjct: 2377654 KQAELEKEQMEQEQEKLEMEQRQKTERKHRGRHRSKEPSPSSDDEEDEEDDEED 2377815 Score = 31.2 bits (69), Expect = 9.0 Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 2/149 (1%) Frame = +3 Query: 511 SAPLMKKGKQREIPKAKKPTSLKKIILKERQERKQRLQENAVSPA--FTSDDTQDGESGG 568 +A KK K + K KK +++ RKQR +N S + +S + +DGESG Sbjct: 3064857 AADKKKKSKNKSKSKPKKEKMKQELY----HRRKQRYHDNLSSSSELSSSSENEDGESG- 3065021 Query: 569 DDQFPEQAELSGPEGMDELISTPSVEDKSEEPPGTELQRDTEASHLAPNHTTFPKIHSRR 628 LS E M++ I D+ P GT + + E N T K +S++ Sbjct: 3065022 ------NKHLSPIEKMEKEIEMRKTVDR--YPNGTRIMKQFENGGDWYNGTI--KSYSKK 3065171 Query: 629 FRDYCSQMLSKEVDACVTDLLKELVRFQD 657 Y + E++ D +K+ ++ D Sbjct: 3065172 RGYYSIKFDDGEIEEFDDDDVKQWLKDDD 3065258 >scaffold_5 Length = 3184085 Score = 32.7 bits (73), Expect = 3.1 Identities = 31/121 (25%), Positives = 50/121 (41%) Frame = +1 Query: 696 PNCEKIQSKGGLDDTLHTIIDYACEQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGA 755 P E I G ++ L ++ + E N LN + + +N+ YDG Sbjct: 1647778 PRQEIIDGYSGAEEDLFYMVSFLMENNQSL---LNGDFIPQVMNQ-----------YDGR 1647915 Query: 756 QDQFHKMVELTVAARQAYKTMLENVQQELVGEPRPQAPPSLPTQGPSCPAEDGPPALKEK 815 + K VE VA + + +E++ L P P +PP T GP+ DG A+ + Sbjct: 1647916 PVEMMKYVEDYVAKEE--RMPIESIDPIL---PAPTSPPRQLTNGPTTIENDGVVAMDTR 1648080 Query: 816 E 816 E Sbjct: 1648081 E 1648083 >scaffold_87 Length = 155492 Score = 32.3 bits (72), Expect = 4.0 Identities = 31/121 (25%), Positives = 48/121 (39%) Frame = +2 Query: 521 REIPKAKKPTSLKKIILKERQERKQRLQENAVSPAFTSDDTQDGESGGDDQFPEQAELSG 580 +++ KAK K LK R+ R N S D DG+ D + E+ E Sbjct: 128870 KKVSKAKAKPKKKASPLKSRRHSTSRRVGNRKSALEVDSDDDDGDEDSSDVYMEEEE--- 129040 Query: 581 PEGMDELISTPSVEDKSEEPPGTELQRDTEASHLAPNHTTFPKIHSRRFRDYCSQMLSKE 640 + S E+ E+ ++QR LA T +R+++ CS+M S E Sbjct: 129041 -------VYYSSDEESVEKDETLKIQR-----ILAVRSET-----RKRWKEICSKMQSSE 129169 Query: 641 V 641 V Sbjct: 129170 V 129172 >scaffold_25 Length = 923391 Score = 31.6 bits (70), Expect = 6.9 Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 18/109 (16%) Frame = -2 Query: 496 RRMSQMKTPHNPLDSSAPLMKKGKQREIPK-------AKKPTS------LKKIILKERQE 542 R+++ K P KKGK + K A PT+ K++ KER E Sbjct: 309842 RKLAASKKKKQDNKKDTPTKKKGKDTKEKKITADDVLAMMPTTDKQKRHEKRVKAKERDE 309663 Query: 543 RKQRLQENAVSPAFTSDDTQDGESGG-----DDQFPEQAELSGPEGMDE 586 R+Q + A+ D + G DD+ E+ +L EGM E Sbjct: 309662 RRQTRRARAMGEEARDFDLVPVSATGDNDHDDDEDDEEVDLMAMEGMSE 309516 >scaffold_18 Length = 1144490 Score = 31.6 bits (70), Expect = 6.9 Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 18/109 (16%) Frame = -3 Query: 496 RRMSQMKTPHNPLDSSAPLMKKGKQREIPK-------AKKPTS------LKKIILKERQE 542 R+++ K P KKGK + K A PT+ K++ KER E Sbjct: 872418 RKLAASKKKKQDNKKDTPTKKKGKDTKEKKITADDVLAMMPTTDKQKRHEKRVKAKERDE 872239 Query: 543 RKQRLQENAVSPAFTSDDTQDGESGG-----DDQFPEQAELSGPEGMDE 586 R+Q + A+ D + G DD+ E+ +L EGM E Sbjct: 872238 RRQTRRARAMGEEARDFDLVPVSATGDNDHDDDEDDEEVDLMAMEGMSE 872092 >scaffold_7 Length = 2770240 Score = 31.6 bits (70), Expect = 6.9 Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 7/119 (5%) Frame = +3 Query: 501 MKTPHNPLDSSAPLMKKGKQREI--PKAKKPTSLKKIILKERQERKQRLQENAVSPAFTS 558 M+ +NPL +M + +R P+ KP + +E + +++ E V+ Sbjct: 1702281 MQLAYNPL-FQVYIMGRNLERPFKSPEVFKPPTADSA--EEETKEEEKTPETTVTEDNDD 1702451 Query: 559 DDTQ-----DGESGGDDQFPEQAELSGPEGMDELISTPSVEDKSEEPPGTELQRDTEAS 612 DD + DG+ DD+ E + S E MD+ S +ED E+ ++ ++E + Sbjct: 1702452 DDDEVTAVADGDDDDDDETDEDED-SSDEEMDDDQSEEDIEDSDEDDGDSDSDDESEVT 1702625 >scaffold_1 Length = 5926375 Score = 31.2 bits (69), Expect = 9.0 Identities = 36/131 (27%), Positives = 49/131 (37%), Gaps = 5/131 (3%) Frame = -3 Query: 196 KRTDRKSRIIAKNVSTSKPEFEFTTLDFPELQGAENNMSEIQKQPKWGPVHSVSTDISLL 255 KR R+++ + STS P T F +NNM+ Q ST + L Sbjct: 4305050 KRKKNNLRLLSSSSSTSTP----TVAIFLSDAFLDNNMAFHQVNNTMN-----STSLQLC 4304898 Query: 256 ----REVVKPAAVLSKGEIVVKNNPNESVTANAATN-SPSCTRELSWTPMGYVVRQTLST 310 + A +G I+ K N S TA TN SP T +SW P V + + Sbjct: 4304897 SASNNDTYFSATASIEGTILTKRNNCSSTTAVIGTNQSPLSTAIVSWLPPPQVKPNVIKS 4304718 Query: 311 ELSAAPKNVTS 321 L A S Sbjct: 4304717 SLKLAKSRKAS 4304685 Database: F.cylindrus/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 80,540,407 Number of sequences in database: 271 Lambda K H 0.311 0.128 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,689,310 Number of Sequences: 271 Number of extensions: 792997 Number of successful extensions: 3822 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 42 Number of HSP's that attempted gapping in prelim test: 3114 Number of HSP's gapped (non-prelim): 1703 length of query: 854 length of database: 26,846,802 effective HSP length: 115 effective length of query: 739 effective length of database: 26,815,637 effective search space: 19816755743 effective search space used: 19816755743 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 69 (31.2 bits)