TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) # Homo sapiens # Complete (854 letters) Database: D.fasciculatum/genome.fa 25 sequences; 31,019,208 total letters Searching.........................done Score E Sequences producing significant alignments: (bits) Value gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced ... 95 2e-19 gi|328866594|gb|GL883026.1| Dictyostelium fasciculatum unplaced ... 46 1e-04 gi|328864870|gb|GL883029.1| Dictyostelium fasciculatum unplaced ... 32 2.1 gi|328873752|gb|GL883009.1| Dictyostelium fasciculatum unplaced ... 32 2.1 gi|328871378|gb|GL883013.1| Dictyostelium fasciculatum unplaced ... 32 2.7 gi|328875389|gb|GL883007.1| Dictyostelium fasciculatum unplaced ... 31 4.6 gi|328874319|gb|GL883008.1| Dictyostelium fasciculatum unplaced ... 30 6.0 gi|328868227|gb|GL883021.1| Dictyostelium fasciculatum unplaced ... 30 7.8 gi|328869574|gb|GL883020.1| Dictyostelium fasciculatum unplaced ... 30 7.8 gi|328869808|gb|GL883018.1| Dictyostelium fasciculatum unplaced ... 30 7.8 gi|328870595|gb|GL883016.1| Dictyostelium fasciculatum unplaced ... 30 7.8 >gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-F-a-25c12.r2-5, whole genome shotgun sequence Length = 4166812 Score = 95.1 bits (235), Expect = 2e-19 Identities = 78/303 (25%), Positives = 141/303 (46%), Gaps = 41/303 (13%) Frame = -1 Query: 521 REIPKAKKPTSLKKIIL-----KER--QERKQRLQENAVS-------------------P 554 R+ PK KKPT+LK+ IL KE+ +++KQ QE ++ P Sbjct: 3053800 RDTPKIKKPTTLKRNILLYKETKEKLIEQQKQDQQEQEINQPVVVVVDQEPTSSIPFPPP 3053621 Query: 555 AFTSDDTQDGESGGDDQFPEQAEL-----SGPEGMDELIS--TPSVEDKSEEPPGTELQR 607 ++D G S + E+ E PE E ++ T V + E+ E ++ Sbjct: 3053620 PLPTNDNDHGCSAQPNHLIEKLETISLENQNPEQQQEDVNHQTSIVNGEEEDKFLMEFKQ 3053441 Query: 608 DT--------EASHLAPNHTTFPKIHSRRFRDYCSQMLSKEVDACVTDLLKELVRFQDRM 659 + + S+ + N+ F Y +Q++++E++ + + + QD Sbjct: 3053440 EYG*IFVYYYKQSNPSTNYIYF-------IFSYINQIINQEINEKAREFIIRIKTMQDNY 3053282 Query: 660 YQKDPVKAKTKRRLVLGLREVXXXXXXXXXXCVIISPNCEKIQSKGGLDDTLHTIIDYAC 719 + +P K K+R + GLRE+ CVII+PN + + +GGL+ + +II Sbjct: 3053281 TKNNP--KKPKKRFITGLREIERDVDCDKISCVIIAPNIDDVGCEGGLNPMIQSIIRMCR 3053108 Query: 720 EQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGAQDQFHKMVELTVAARQAYKTMLEN 779 ++ I + FAL+++ +GR L+ + +S G+ S+DGA D + ++ LT AR ++ EN Sbjct: 3053107 KKQILYTFALSKRIIGRLLHVPIKISAFGVLSHDGAHDLYRQLDLLTQRARTTFR---EN 3052937 Query: 780 VQQ 782 Q Sbjct: 3052936 YNQ 3052928 Score = 33.9 bits (76), Expect = 0.54 Identities = 20/60 (33%), Positives = 30/60 (50%) Frame = -3 Query: 558 SDDTQDGESGGDDQFPEQAELSGPEGMDELISTPSVEDKSEEPPGTELQRDTEASHLAPN 617 SDD D E DDQ P+Q +L+ P ++ S+E + E E ++D E + L N Sbjct: 1200335 SDDENDPEKQEDDQEPQQDDLNVPPNAADV---ESIEPEKPEEEEEEKKQDEEGTSLTSN 1200165 Score = 30.8 bits (68), Expect = 4.6 Identities = 42/189 (22%), Positives = 68/189 (35%), Gaps = 23/189 (12%) Frame = -2 Query: 422 IETPKFQSKQQPQDNFKNNVKKSQLPVQLDLGGMLTALEKKQHSQHAKQXXXXXXXXXXX 481 I +P Q +QQ NN++++Q +++QH Q +Q Sbjct: 2498856 IHSPHHQIQQQHY----NNLRQAQQ-------------QQQQHQQQQQQIQQQQQQHMNH 2498728 Query: 482 XXXXXXECASGERGRRMSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKK---IILK 538 + +S S TP P + P++ R+ + K+ T LKK +LK Sbjct: 2498727 HHHHHHDGSSSPPHSPASNSSTPTFPPEQGQPMISLNSPRDEKEKKRRTRLKKEQSTVLK 2498548 Query: 539 E--------RQERKQRLQEN------AVSPAFTSDDTQ------DGESGGDDQFPEQAEL 578 +E K+ L AV+ F++ + DG G PEQ Sbjct: 2498547 SFFNRDCYPNKEEKESLANQLGMTYTAVTTWFSNKRQENRRKSTDGTGGRRVPVPEQLSP 2498368 Query: 579 SGPEGMDEL 587 S P G+ L Sbjct: 2498367 SSPNGLPSL 2498341 Score = 30.0 bits (66), Expect = 7.8 Identities = 27/124 (21%), Positives = 53/124 (42%) Frame = +1 Query: 245 VHSVSTDISLLREVVKPAAVLSKGEIVVKNNPNESVTANAATNSPSCTRELSWTPMGYVV 304 + S + ++ L KP S + + S +++++ +S S S Sbjct: 2942791 ISSNDSRVAKLSSAFKPQVSSSSASAAPNGSSSSSSSSSSSPSSSSPPNHHSTHVPSSSS 2942970 Query: 305 RQTLSTELSAAPKNVTSMINLKTIASSADPKNVSIPSSEALSSDPSYNKEKHIIHPTQKS 364 + S +P + + T+ASSA+ +PS+ LSS S ++++ HPTQ++ Sbjct: 2942971 SSASFSSSSNSPNHTSPHPTASTVASSANVPPTQVPSN--LSSSSSISQQQS--HPTQQN 2943138 Query: 365 KASQ 368 Q Sbjct: 2943139 PHPQ 2943150 >gi|328866594|gb|GL883026.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_EU5ZYIE02H8LDV-5, whole genome shotgun sequence Length = 1919465 Score = 46.2 bits (108), Expect = 1e-04 Identities = 71/401 (17%), Positives = 142/401 (35%), Gaps = 25/401 (6%) Frame = -2 Query: 237 QKQPKWGPVHSVSTDISLLREVVKPAAVLSKGEIVVKNNPNESVTANAATNSPSCTRELS 296 Q+QPK V S ST + P A + V PN +A +A + Sbjct: 1261003 QQQPKPTVVPSSSTTTTTTTTTSAPVAAATTSTTPVTTKPNSKPSAKSAAKPAAAAAAKG 1260824 Query: 297 WTPMGYVVRQTLSTELSAAPKNVTSMINLKTIASSADPKNVSIPSSEALSSDPSYNKE-- 354 + + T + E LK P +V+ PS +A ++ S ++ Sbjct: 1260823 FANF---FKPTQNDEGGKVDLFAKYDQKLKDDVVHVKPSSVAAPSKKAAATKKSAPQQIS 1260653 Query: 355 KHIIHPTQKSKASQGSDLEQ-NEAXXXXXXXXXXXXXXYEVLTVQEPPRIEDAEEFPNLA 413 K + QK K S D + +++ E + V+ I D+E+ + Sbjct: 1260652 KAFVPVNQKKKKSHSDDDDSGSDSDSGSNDPFASEDEEEEQVFVKRKKNILDSEDEMEIE 1260473 Query: 414 VA-SERRDRIETPKFQSKQQPQDNFKNNVKKSQLPVQLDLGGMLTALEKKQHSQHAKQXX 472 + S+ ++R+E + + +++ + + +K + + L E+K+ + K+ Sbjct: 1260472 NSQSQEQERLEKERLEKEKETLEKERLEKEKKEKEEKERLAKEKKEKEEKERLEKEKKQK 1260293 Query: 473 XXXXXXXXXXXXXXXECASGERGRRMSQMKTPHNPL--------------------DSSA 512 E E R+ + K L + Sbjct: 1260292 EKEEKERLEKEKKEKEKKEKEEKERLEKEKKEKERLEKEKEEKERLAKGKKEKEEKEKKE 1260113 Query: 513 PLMKKGKQREIPKAKKPTSLKKIILKERQERKQR-LQENAVSPAFTSDDTQDGESGGDDQ 571 K K++E KK T KK+I++E +E +++ +++ V+ ++ + Sbjct: 1260112 TTSTKRKEKESTPTKKSTPKKKVIVEEEEEEEEKVVEQEEVAEEEEEEEEEQPVKKQKTI 1259933 Query: 572 FPEQAELSGPEGMDELISTPSVEDKSEEPPGTELQRDTEAS 612 E A+ P +T S D+ +E T ++ T A+ Sbjct: 1259932 AKEPAKKKAPASKSTTTTTKSKGDEQDEKKKTPTKKSTTAT 1259810 >gi|328864870|gb|GL883029.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_EUAJFUG02HR96I-5, whole genome shotgun sequence Length = 3408800 Score = 32.0 bits (71), Expect = 2.1 Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 11/126 (8%) Frame = +3 Query: 502 KTP--HNPLDSSAPLMKKGKQREIPKAKKP-------TSLKKIILKERQERKQRLQENAV 552 KTP P+ KK ++ AKK TS +K + KE + + + Sbjct: 1927731 KTPAKKTPVKKETTPAKKAPAKKAAAAKKEKTSTTSTTSTRKKVKKEESDSEDDKKSKGK 1927910 Query: 553 SPAFTSDDTQDGESGGDDQFPEQAELSGPEGM--DELISTPSVEDKSEEPPGTELQRDTE 610 +DD+ D E +D + E P G+ + L V EP G +L D + Sbjct: 1927911 KRK-KADDSDDDEEDAEDGYKWWLEKDHPNGVKWETLTHNGPVFPPDYEPHGIKLYYDGK 1928087 Query: 611 ASHLAP 616 A L P Sbjct: 1928088 ALELTP 1928105 Score = 31.2 bits (69), Expect = 3.5 Identities = 44/218 (20%), Positives = 86/218 (39%) Frame = +3 Query: 129 NENTCPLPQEMKALFXXXXXXXXXXXXQQKFDSERADGTISSEIKSARGSHHLSIYAENS 188 N CPL Q KALF F ++ +GT S++ +S Sbjct: 59736 NRLLCPLHQNQKALFL--------------FQIKKKNGTNSTKYSDDEDD-------SSS 59852 Query: 189 LKSDGYHKRTDRKSRIIAKNVSTSKPEFEFTTLDFPELQGAENNMSEIQKQPKWGPVHSV 248 D K T + KN+ S + +T+ + + I + K +H+ Sbjct: 59853 DDVDMKDKTTTTSTTTTNKNIPLSTKKSASSTIINNKRSNSNEANKNISVKIKIPTMHND 60032 Query: 249 STDISLLREVVKPAAVLSKGEIVVKNNPNESVTANAATNSPSCTRELSWTPMGYVVRQTL 308 S I+ +VKP LSK +++ + + + A ++P+ ++ TP ++ Sbjct: 60033 SKIIT----IVKPK--LSKDQLLKRKTFRQKIMRRLALSAPTSVPTIA-TPKAKPSSKSS 60191 Query: 309 STELSAAPKNVTSMINLKTIASSADPKNVSIPSSEALS 346 ++ S++ + +S + + +SS+ K+ PS S Sbjct: 60192 TSSSSSSSSSSSSKPSSNSPSSSSSSKSKQEPSKNGSS 60305 Score = 30.8 bits (68), Expect = 4.6 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 3/78 (3%) Frame = +1 Query: 525 KAKKPTS-LKKIILKERQ--ERKQRLQENAVSPAFTSDDTQDGESGGDDQFPEQAELSGP 581 KAKK KKI KE+Q +R Q+ +E SDD D E DD+ ++ + S Sbjct: 2324080 KAKKRAERAKKIEEKEKQRADRHQKRKEKKAKGEDVSDDDDDDEDDDDDEDFDEDDFSDS 2324259 Query: 582 EGMDELISTPSVEDKSEE 599 + + + KSE+ Sbjct: 2324260 DSDSDWEAPVKKSKKSEK 2324313 >gi|328873752|gb|GL883009.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-G-o-33e01.r1-3, whole genome shotgun sequence Length = 1429294 Score = 32.0 bits (71), Expect = 2.1 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Frame = +2 Query: 265 LSKGEIVVKNNPNESVTANAATNSPSCTRELSW-TPMGYVVRQTLSTELSAAPKNVTSMI 323 L++ +IV+ N+P S +++++++S S + S TP G + S SAAP TS Sbjct: 253559 LNQKQIVLLNHPQPSSSSSSSSSSSSSSSSTSQITPGG---PNSSSPSPSAAPNTPTSPK 253729 Query: 324 NLKTIASSADPKNVSIPSS 342 + T + N + PSS Sbjct: 253730 TINTKRENQTSNNTTTPSS 253786 >gi|328871378|gb|GL883013.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_ET2XIPL01CNAVH-3, whole genome shotgun sequence Length = 1908399 Score = 31.6 bits (70), Expect = 2.7 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 7/98 (7%) Frame = -3 Query: 286 TNSP--SCTRELSWTPMGYVVRQTLSTELSAAPKNVTSMINLKTIASSADPKNVSIPSSE 343 T+SP S ++ + +P Y Q +T +S + + M + +SS P N+S+P + Sbjct: 621157 TSSPNLSSAQQPNLSPNLYSSNQPNNTPVSILKRPLRRMTITSSSSSSVQPNNLSVPPNS 620978 Query: 344 ALSSDPSYNKEKHIIHPTQKSKASQGS-----DLEQNE 376 SS S + + I +S S DL+ E Sbjct: 620977 NTSSSSSSSNNNNFILAATRSTLSDNKKFNLIDLDSTE 620864 Score = 31.2 bits (69), Expect = 3.5 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Frame = +3 Query: 517 KGKQREIPKAKKPTSLKKIILKERQERKQRLQ-ENAVSPAFTSDDTQDGESGGDDQFPEQ 575 KGK+++ + +KP KK E +E K+ L+ + + D ++ + GD + Sbjct: 1127217 KGKRKKKVQKEKPKKKKKKTRAEEEEEKEELEKQKELEEKEKEDGDKEEKEDGDKEKESS 1127396 Query: 576 AELSGPEGMDELISTPSVEDKSEE 599 + G E + I +DK ++ Sbjct: 1127397 EKKDGDEEISGTIEPSQDKDKEKD 1127468 >gi|328875389|gb|GL883007.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-G-p-12c09.r1-3, whole genome shotgun sequence Length = 1770755 Score = 30.8 bits (68), Expect = 4.6 Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 7/114 (6%) Frame = +3 Query: 493 ERGRRMSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKIILKERQERKQRL--QEN 550 E R+ + + HN +A + +++E +A + S+K+ I ++R++ QE Sbjct: 464484 EEEERVFKKRKTHN----NAIVDDDEEEKEEEEAAEANSIKQAIEEKRRKFNAMFVDQEE 464651 Query: 551 AVSPAF--TSDDTQD---GESGGDDQFPEQAELSGPEGMDELISTPSVEDKSEE 599 A+ D+ QD G+ GGDD + ++ E D +TP +E EE Sbjct: 464652 AIKTRHHPKKDNEQDVIMGDIGGDDDDDDMEDIPCTEFKDVCGTTPILESIQEE 464813 >gi|328874319|gb|GL883008.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-G-o-80e12.f1-5, whole genome shotgun sequence Length = 2750715 Score = 30.4 bits (67), Expect = 6.0 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 2/90 (2%) Frame = +3 Query: 495 GRRMSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTS--LKKIILKERQERKQRLQENAV 552 G M Q K P P + K K I P L +++ + + Sbjct: 1551459 GDMMEQDKPPKPPTAPKTKQLAKVKPEPIETEAAPPKYDLNDVLMDDDSS-----DSGSS 1551623 Query: 553 SPAFTSDDTQDGESGGDDQFPEQAELSGPE 582 FTS +++ E+ GDD P++ ELS + Sbjct: 1551624 ELDFTSSSSEEEENSGDDYVPDRGELSSDD 1551713 >gi|328868227|gb|GL883021.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_ET2XIPL01COFD4-5, whole genome shotgun sequence Length = 3468650 Score = 30.0 bits (66), Expect = 7.8 Identities = 17/62 (27%), Positives = 29/62 (46%) Frame = -2 Query: 559 DDTQDGESGGDDQFPEQAELSGPEGMDELISTPSVEDKSEEPPGTELQRDTEASHLAPNH 618 ++ Q E G +++ PE+ GPE P S+ PP ++Q E + +P+ Sbjct: 2295445 EEPQQEEKGPEEKGPEE---KGPEEKGPEEKGPETMTGSDSPPKEDVQEKLETTSPSPST 2295275 Query: 619 TT 620 TT Sbjct: 2295274 TT 2295269 >gi|328869574|gb|GL883020.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_EJPB12P01AWP9W-5, whole genome shotgun sequence Length = 629417 Score = 30.0 bits (66), Expect = 7.8 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 4/92 (4%) Frame = -1 Query: 527 KKPTSLK----KIILKERQERKQRLQENAVSPAFTSDDTQDGESGGDDQFPEQAELSGPE 582 KKPT+ K IL +R+E Q + E V DD+ D GDD+ + E Sbjct: 306803 KKPTTTTTAPTKNILGKRRE--QEVVEKVVEEELFEDDSSDEIEEGDDEDDGSIDEQDDE 306630 Query: 583 GMDELISTPSVEDKSEEPPGTELQRDTEASHL 614 ++ ++T S+ E+ + ++E ++ Sbjct: 306629 DDEDNLTTGSISTYGEQDSSEDDDDESEEENI 306534 >gi|328869808|gb|GL883018.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-G-b-285a01.f1-5, whole genome shotgun sequence Length = 1327167 Score = 30.0 bits (66), Expect = 7.8 Identities = 22/85 (25%), Positives = 37/85 (43%) Frame = +1 Query: 277 NESVTANAATNSPSCTRELSWTPMGYVVRQTLSTELSAAPKNVTSMINLKTIASSADPKN 336 N S+++ T+SP S + Q +S L+ + K S + SSA+ Sbjct: 449134 NSSISSTTGTSSPPLLSSGSTGMSTLNISQQMSPPLNQSQKIDHSSPSSSPQLSSANTGK 449313 Query: 337 VSIPSSEALSSDPSYNKEKHIIHPT 361 SI E+L +++ K I HP+ Sbjct: 449314 FSIKKGESLKIKSTFHTTKFIQHPS 449388 Score = 30.0 bits (66), Expect = 7.8 Identities = 26/112 (23%), Positives = 39/112 (34%) Frame = -2 Query: 31 NVAWLESSEACVFPSSAATYYPFVQEPPVTEQKIYTEDMAFGASTFPPQYLSSEITLHPY 90 N+ W S+ A P S +Y PP E Y + +T P + ++ +HP Sbjct: 769019 NLTWNVSTAAATTPLSLHSY------PPQLE---YLKGGLIDINTIPSTLTTLDLIIHPQ 768867 Query: 91 AYSPYTLDSTQNVYSVPGSQYLYNQPSCYRGFQTVKHRNENTCPLPQEMKAL 142 + +YS+P L N N N LP +K L Sbjct: 768866 QQQQQQIGIQIPIYSIPSINQLDNN-------SHTDSNNNNNNILPNNLKKL 768732 >gi|328870595|gb|GL883016.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-G-b-143d02.r1-5, whole genome shotgun sequence Length = 656888 Score = 30.0 bits (66), Expect = 7.8 Identities = 18/58 (31%), Positives = 27/58 (46%) Frame = -1 Query: 558 SDDTQDGESGGDDQFPEQAELSGPEGMDELISTPSVEDKSEEPPGTELQRDTEASHLA 615 SDD++ ES D+ PE E +DE + P E + E P + + D E +A Sbjct: 68648 SDDSEAEESELDEADPEADEPEADPELDEPEADPEAEPEPEADPEADPEPDPEPDPVA 68475 Database: D.fasciculatum/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 31,019,208 Number of sequences in database: 25 Lambda K H 0.311 0.128 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,792,354 Number of Sequences: 25 Number of extensions: 288366 Number of successful extensions: 1404 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 15 Number of HSP's that attempted gapping in prelim test: 1110 Number of HSP's gapped (non-prelim): 813 length of query: 854 length of database: 10,339,736 effective HSP length: 109 effective length of query: 745 effective length of database: 10,337,011 effective search space: 7701073195 effective search space used: 7701073195 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 65 (29.6 bits)