TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) # Homo sapiens # Complete (854 letters) Database: D.discoideum_AX4/genome.fa 6 sequences; 33,943,072 total letters Searching......done Score E Sequences producing significant alignments: (bits) Value gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromoso... 86 2e-16 gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromoso... 39 0.018 gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromoso... 36 0.16 gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromoso... 33 0.77 gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromoso... 31 3.8 gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromos... 31 5.0 >gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole genome shotgun sequence Length = 6357299 Score = 85.5 bits (210), Expect = 2e-16 Identities = 65/276 (23%), Positives = 131/276 (47%), Gaps = 12/276 (4%) Frame = +3 Query: 510 SSAPLMKKGKQREI----PKAKKPTSLKKII-----LKERQERKQRLQ--ENAVSPAFTS 558 SS P K K++ K KPT LK+ I +KE ++++LQ EN ++ S Sbjct: 1934934 SSIPTEKLKKKKNFLIKDEKPPKPTRLKRDIQLFTSIKENYTKEKQLQKEENKINIENQS 1935113 Query: 559 DDTQDGESGGDDQFPEQAELSGPEGMDELISTPSVEDKSEEPPGTELQRDTEASHLAPNH 618 + T ++ E ++ + + + + ++ ++Q+ + Sbjct: 1935114 EKTNISIENHENT---------DENLENNVKSLEQQQQQQQQQQPQVQQQVQQ------- 1935245 Query: 619 TTFPKIHSRRFRDYCSQML-SKEVDACVTDLLKELVRFQDRMYQKDPVKAKTKRRLVLGL 677 ++ + F++Y +Q+L + +++ +L+ L +FQ++ Y +P K K+R + GL Sbjct: 1935246 ----QVQQQNFQEYINQILPNNDINNTCKELIGILRKFQEKSYLNNP--DKPKKRYICGL 1935407 Query: 678 REVXXXXXXXXXXCVIISPNCEKIQSKGGLDDTLHTIIDYACEQNIPFVFALNRKALGRS 737 RE CVII+P I+ G L+ + I+ ++I + FAL+ ++LG+ Sbjct: 1935408 RETLKFVESNKVSCVIITPT---IEENGALNKIVEDIVRMCKSRSILYTFALSSRSLGKL 1935578 Query: 738 LNKAVPVSVVGIFSYDGAQDQFHKMVELTVAARQAY 773 + K + ++V+GI YDGA + + K+ T +R + Sbjct: 1935579 IGKTIKITVLGILDYDGANEIYQKLFTQTKQSRDEF 1935686 Score = 40.0 bits (92), Expect = 0.008 Identities = 67/352 (19%), Positives = 136/352 (38%), Gaps = 14/352 (3%) Frame = +2 Query: 286 TNSPSCTRELSWTPMGYVVRQTLSTELSAAPKNVTSMINL---KTIASSADPKNVSIPSS 342 +++PS +E + + + S++ +AA K + IN K SS+D ++ S S Sbjct: 2462741 SSTPSVKKEDTTKKSKNISTSSSSSKKAAAKKKDSGSINSIIKKKKRSSSDSEDESENSE 2462920 Query: 343 EALSSDPSYNKEKHIIHPTQKSKASQGSDLEQNEAXXXXXXXXXXXXXXYEVLTVQEPPR 402 + + PSY + K IIH S SD E+ E Sbjct: 2462921 DDIKL-PSYKRNKKIIH-----NDSDDSDKEEEEE------------------------- 2463007 Query: 403 IEDAEEFPNLAVASERRDRIETPKFQSKQQPQDNFKNNVKKSQLPVQLDLGGMLTALEKK 462 E+ E+ P+ ++ ++ + + + N+KK +L + LEK+ Sbjct: 2463008 -EEEEKGPSFI---SKKRQLSSSSDSEDNHSDNESEQNIKKQKLEKE-------QQLEKE 2463154 Query: 463 QHSQHAKQXXXXXXXXXXXXXXXXXECASGERGRRMSQMKTPHNPLDSSAPLMKKGKQRE 522 + + K+ E E+ ++ + K L+ ++K K+ + Sbjct: 2463155 RLEKEKKEKLEKEKKEKLEKERLEKEKLEKEKKEKLEKEKLEKERLEKEK--LEKEKKEK 2463328 Query: 523 IPKAKKPTSLKKIILKERQERKQRLQENAVSPA----------FTSDDTQDGESGGDD-Q 571 + K KK K+ + KE+ E ++L+ + SP+ F ++ ++ + ++ + Sbjct: 2463329 LEKEKKEKEEKERLKKEK-ENLEKLKSKSKSPSKETSKKEKTIFVKEEEKEVKKEKEEKE 2463505 Query: 572 FPEQAELSGPEGMDELISTPSVEDKSEEPPGTELQRDTEASHLAPNHTTFPK 623 ++ E E +E+I P ++ KS P T + S P + K Sbjct: 2463506 VKKEKEEKEEEEEEEVIEKP-IKKKSSTPIPTPTKSSQNKSSSTPTKSPIQK 2463658 Score = 33.9 bits (76), Expect = 0.59 Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 11/162 (6%) Frame = -2 Query: 522 EIPKAKKPTSLKKIILKERQERKQRL--------QENAVSPAFTSDDTQDGESGGDDQFP 573 +IP+ + S +I K ++ +K++L + N DD +GE+ DD+ Sbjct: 6183475 KIPRGEWYCSSCEIERKNKKNKKRKLDGAGKKNKKNNKDDDDDNDDDDDEGENDEDDE-D 6183299 Query: 574 EQAELSGPEGMDELISTPSVEDKSEEPPGTELQRDTEASHLAPNHTTFPKIHSRRFRDYC 633 Q E SG E +E +D EE G E + + + N + P I +R +D Sbjct: 6183298 HQDEDSGEEEDEEEDEEEEDDDDEEEEEGNEKNKIKKRKRIPINQS--PSI-KKRTKDID 6183128 Query: 634 SQMLSKEVDACVTDLLKELVRFQDR---MYQKDPVKAKTKRR 672 S+ +E + + +E R Q R + Q+ +K K K++ Sbjct: 6183127 SEEEEEEEEEEEENDSEEERRIQKRKNKIKQQQQLKMKEKKQ 6183002 Score = 31.2 bits (69), Expect = 3.8 Identities = 15/29 (51%), Positives = 19/29 (65%) Frame = +3 Query: 336 NVSIPSSEALSSDPSYNKEKHIIHPTQKS 364 N+SI SS+ L S S+N KH+I P KS Sbjct: 1944270 NISICSSDILPSCGSHNNSKHLITPCNKS 1944356 Score = 30.4 bits (67), Expect = 6.5 Identities = 24/94 (25%), Positives = 31/94 (32%), Gaps = 1/94 (1%) Frame = +1 Query: 44 PSSAATYYPFVQEPPVTEQKIYTEDMAFGASTFPPQYLSSEITLHPYAYSPYTLD-STQN 102 P + P P Q T+ + P Y T PY PYT Q+ Sbjct: 4298806 PQQTTPFQPMQPTQPSYSQPQQTQPLPL--PPMQPSYNQQPYTQQPYTQQPYTQQPGQQS 4298979 Query: 103 VYSVPGSQYLYNQPSCYRGFQTVKHRNENTCPLP 136 Y P Q Q + + T+ EN CP P Sbjct: 4298980 QYQQPQQQTPQQQAAVEQPVPTL----ENLCPKP 4299069 Score = 30.4 bits (67), Expect = 6.5 Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 32/114 (28%) Frame = +2 Query: 273 KNNPNESVTANAATNSP---SCTRELSWT---PMGYV--------VRQTLSTELSAA--- 315 K++P+ S+T++ +T+SP S TR +S T P+G + V++T +T + + Sbjct: 5812808 KSSPSRSLTSSPSTSSPRISSTTRPVSMTLKSPLGSISSSPSSSGVKKTTTTTTTPSSPL 5812987 Query: 316 ---------------PKNVTSMINLKTIASSADPKNVSIPSSEALSSDPSYNKE 354 P + TS T + + PK++ S+ LS++ + NK+ Sbjct: 5812988 PNIKSSLTNGNTPTKPTSTTSTSTTTTSTTLSSPKSIRRLSTPILSNNSTPNKD 5813149 >gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromosome 5, whole genome shotgun sequence Length = 5125352 Score = 38.9 bits (89), Expect = 0.018 Identities = 83/418 (19%), Positives = 151/418 (36%), Gaps = 7/418 (1%) Frame = +1 Query: 189 LKSDGYHKRTDRKSRIIAKNVSTSKPEFEFTTLDFPELQGAENNMSEIQKQPKWGPVHSV 248 LK+ +K ++S+ I K+ + S+P+ + E + SE + + + Sbjct: 3160246 LKNSNINKNNSKESQSIKKSPTKSQPKQSKKNASDKITKTIEESQSESESEEPI-EISKK 3160422 Query: 249 STDISLLREVVK-PAAVLSKGEIVVKNNPNESVTANAATNSPSCTRELSWTPMGYVVRQT 307 STD +L++ K P+ + E K N+S T + S E + Sbjct: 3160423 STDKPILKQSKKKPSESEEESEKEQKKIVNKSSTKPISKQSKKKAVESESEEESEPGSEE 3160602 Query: 308 LSTELSAAPKNVTSMINLKTIASSADPKNV-SIPSSEALSSDPSYNKEKHIIHPTQKSKA 366 S E S K + + K I+ + K V S P SE+ S + S +E+ T K Sbjct: 3160603 ESEEES---KKAVNKASAKPISKQSKKKAVESEPESESESDEESEEEEESEEEETNKVVT 3160773 Query: 367 -SQGSDLEQNEAXXXXXXXXXXXXXXYEVLTVQEPPRIEDAEEFPNLAVASERRDRIETP 425 S L+Q++ +E E EE + + + + ++ Sbjct: 3160774 KSTSKPLKQSKKKEIESESESKSEEE------EEEEEEEKEEESKKKSSSKQSKKKVTKS 3160935 Query: 426 KFQSKQQPQDNFKN---NVKKSQLPVQLDLGGMLTALEKKQHSQHAKQXXXXXXXXXXXX 482 KF+S+ + ++ K+ NVKKS + E K S + Sbjct: 3160936 KFESEHESEEESKDSKKNVKKSASKQSKKKVTQESDEELKSESDEEIKKEKSKKVKKEKE 3161115 Query: 483 XXXXXECASGERGRRMSQMKTPHNPLDSSAPLMK-KGKQREIPKAKKPTSLKKIILKERQ 541 + E R+ + K + K K K++E K + KKI E + Sbjct: 3161116 NKLKEKEKKEEEKRKEEKEKLEREKKEKEKEKEKEKEKEKEKEKKRIEKEKKKIRENEEK 3161295 Query: 542 ERKQRLQENAVSPAFTSDDTQDGESGGDDQFPEQAELSGPEGMDELISTPSVEDKSEE 599 ERKQ+ ++ D ++ E + + E E E ++ ++K E+ Sbjct: 3161296 ERKQKEKDEKKRKEKEEKDRKEKEEKEEKERKENEENERKEKEEKKRKEKERKEKEEK 3161469 Score = 30.8 bits (68), Expect = 5.0 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 3/93 (3%) Frame = -3 Query: 532 LKKIILKERQERKQRLQENAVSPAFTSDDTQDGES---GGDDQFPEQAELSGPEGMDELI 588 +KK++L ++Q Q+N SP+ TS +GES G + G G Sbjct: 4898319 VKKMLLMNSTHQQQ--QQNFSSPSSTSPTLVNGESSPKSGRSSNTTSSSSGGGGGGGRKR 4898146 Query: 589 STPSVEDKSEEPPGTELQRDTEASHLAPNHTTF 621 S+ VE K +E P + L ++ E S + F Sbjct: 4898145 SSTIVEVKVKEVPSSALLKEDETSGYLKKKSAF 4898047 >gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromosome 4, whole genome shotgun sequence Length = 5450249 Score = 35.8 bits (81), Expect = 0.16 Identities = 23/75 (30%), Positives = 34/75 (45%) Frame = -1 Query: 286 TNSPSCTRELSWTPMGYVVRQTLSTELSAAPKNVTSMINLKTIASSADPKNVSIPSSEAL 345 T SPS T L P Y T + +LSA+ + M+ + T ++ P + PS+ L Sbjct: 4374233 TPSPSLTSSLPIVPTTYTTTTTTNVQLSAS--STIPMVPITTTTTTTTPPPLQSPSTFNL 4374060 Query: 346 SSDPSYNKEKHIIHP 360 SS N H +P Sbjct: 4374059 SSSIDQNNPNHPNNP 4374015 Score = 30.8 bits (68), Expect = 5.0 Identities = 23/86 (26%), Positives = 40/86 (46%) Frame = +1 Query: 262 AAVLSKGEIVVKNNPNESVTANAATNSPSCTRELSWTPMGYVVRQTLSTELSAAPKNVTS 321 +A S ++P+ S ++AA++ PS + S P S+ S+AP + +S Sbjct: 413284 SAASSADSSAASSSPSSSAASSAASSEPSSSAASSSAP---------SSASSSAPSSASS 413436 Query: 322 MINLKTIASSADPKNVSIPSSEALSS 347 + +SSA S SSE+ S+ Sbjct: 413437 SAPSSSASSSAASSAASSESSESSSA 413514 >gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromosome 1, whole genome shotgun sequence Length = 4923596 Score = 33.5 bits (75), Expect = 0.77 Identities = 51/208 (24%), Positives = 82/208 (39%), Gaps = 21/208 (10%) Frame = +1 Query: 259 VKPAAVLSKGEIVVKNNPNESVTANAATNSPSCTRELSWTPMGYVVRQTLSTELSAAPKN 318 VKP KG+I K N N+ +++ ++ SPS T + T + LS+ S AP Sbjct: 2984209 VKPVNNKPKGKIEEKKNTNQLASSSLSSPSPSPTS--TSTLPSSISTSRLSSSASTAPPT 2984382 Query: 319 VTSMINLKTIASSADPKNVSIPSS--------EALSSDPSYNKEKHIIHPTQKSKASQGS 370 T ++ SS+ N S PSS + SS S + +P+ S S S Sbjct: 2984383 STLPSSISAPRSSSS-SNSSTPSSLYSYLPYRYSSSSSSSSSYPSSSSYPSSSSSYSSYS 2984559 Query: 371 -------DLEQNEAXXXXXXXXXXXXXXYEVLTVQ--EPPRIEDAEEFPNLAVASER--- 418 +LE N E+ Q E R+E+ + L + +ER Sbjct: 2984560 SFSSPRKNLENNREFASPRKDDISFIERKELTEKQQKENERLEE-QRISLLRLETERQNL 2984736 Query: 419 -RDRIETPKFQSKQQPQDNFKNNVKKSQ 445 + R+E + KQ+ D V++ + Sbjct: 2984737 AKQRLEKERILEKQKLNDERLERVERDR 2984820 Score = 30.0 bits (66), Expect = 8.5 Identities = 17/44 (38%), Positives = 29/44 (65%) Frame = +1 Query: 503 TPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKIILKERQERKQR 546 T HN + AP+ KK K++++ K KK +KK I K+++++K R Sbjct: 288064 TIHNNI--LAPIKKK-KKKKLKKKKKQKKIKKKIKKKKKKKKNR 288186 Score = 30.0 bits (66), Expect = 8.5 Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 8/120 (6%) Frame = -3 Query: 496 RRMSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKIILKERQERKQRLQEN----- 550 ++M+ P+ SS P KK +R +P K+ ++ E Q +KQ L N Sbjct: 715236 KKMAASSNPNPVPPSSLPGGKK--RRFVPPVKQDEQEEQ----EEQNKKQNLSNNNNNNN 715075 Query: 551 ---AVSPAFTSDDTQDGESGGDDQFPEQAELSGPEGMDELISTPSVEDKSEEPPGTELQR 607 +++ +++ + + ++Q ++ + + P G+D + P +DK L+R Sbjct: 715074 NNKSINNNKNNNNNNNNNNNNNNQSNKKNDETNPSGIDNINGVPLDDDKLRNLEPVMLER 714895 >gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromosome 6, whole genome shotgun sequence Length = 3602379 Score = 31.2 bits (69), Expect = 3.8 Identities = 14/32 (43%), Positives = 23/32 (71%) Frame = +1 Query: 515 MKKGKQREIPKAKKPTSLKKIILKERQERKQR 546 MKK K++++ K KK LKK+ KE +E+K++ Sbjct: 2936566 MKKFKKKKLKKLKKLKKLKKMKKKEEKEKKEK 2936661 >gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromosome 2, whole genome shotgun sequence Length = 8484197 Score = 30.8 bits (68), Expect = 5.0 Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Frame = +2 Query: 243 GPVHSVSTDISLLREVV--KPAAVLSKGEIVVKNNPNESVTANAATNSPSCTRELSWTPM 300 G + +V+ S++ V +P + LS+ + N+ + V T+S S TR S Sbjct: 1817717 GDIKTVAPPSSVIGGVSSRRPTSTLSRSGSGINNSSSVDVKKTTTTSSSSSTRSSS---- 1817884 Query: 301 GYVVRQTLSTELSAAPKNVTSMINLKTIASSADPKNVSIPSSEALSSDPSYNKEKHIIHP 360 LST S+ T +++ PK+ IPSS + SS S + Sbjct: 1817885 -------LSTSSSS------------TTSTATRPKSTIIPSSSSSSSSSSSSSSSSSSSS 1818007 Query: 361 TQKSK 365 TQ + Sbjct: 1818008 TQSKR 1818022 Score = 30.4 bits (67), Expect = 6.5 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 4/91 (4%) Frame = +2 Query: 269 EIVVKNNPNESVTANAATNSPSCTRELSWTPMGYVVRQTLSTELSAAPKNVTSMINLK-- 326 E +V+NN + ++++++N P EL ++ LS +LS+ + TS K Sbjct: 857378 EKIVENNKKQKTSSSSSSNEPVNRFELD--------KEALSNKLSSILAHGTSTKKQKPT 857533 Query: 327 --TIASSADPKNVSIPSSEALSSDPSYNKEK 355 T A++AD + S + L+ KEK Sbjct: 857534 TTTAAAAADGSTILSKSEQTLNETLKKEKEK 857626 Database: D.discoideum_AX4/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 33,943,072 Number of sequences in database: 6 Lambda K H 0.311 0.128 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,332,386 Number of Sequences: 6 Number of extensions: 224422 Number of successful extensions: 1241 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 946 Number of HSP's gapped (non-prelim): 860 length of query: 854 length of database: 11,314,357 effective HSP length: 109 effective length of query: 745 effective length of database: 11,313,703 effective search space: 8428708735 effective search space used: 8428708735 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 66 (30.0 bits)