TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) #
Homo sapiens # Complete
         (854 letters)

Database: C.fasciculata/genome.fa 
           1089 sequences; 37,048,325 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Cf_Contig1048  |  | 1 to 336746                                        32   3.2  
Cf_Contig1022  |  | 1 to 227790                                        32   3.2  
Cf_Contig1010  |  | 1 to 178774                                        32   3.2  
Cf_Contig773  |  | 1 to 25442                                          31   4.1  
Cf_Contig760  |  | 1 to 77080                                          31   5.4  
Cf_Contig606  |  | 1 to 135677                                         31   5.4  
Cf_Contig941  |  | 1 to 68895                                          30   7.1  
Cf_Contig1034  |  | 1 to 274177                                        30   9.2  
Cf_Contig607  |  | 1 to 20871                                          30   9.2  

>Cf_Contig1048  |  | 1 to 336746
          Length = 336746

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -3

Query: 277   NESVTANAATNSPSCTRELSWTPMG-YVVRQTLSTELSAAPKNVTSMINLKTIASSA 332
             + S++A A+T SPSC+  L+WT    +  +   ST    +   VT  +  +++ S+A
Sbjct: 72393 SSSMSATASTVSPSCSSTLTWT*RNTWTAKTATSTRRRCSTSCVTCCVVSRSVTSAA 72223


>Cf_Contig1022  |  | 1 to 227790
          Length = 227790

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 22/72 (30%), Positives = 32/72 (44%)
 Frame = +2

Query: 500    QMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKIILKERQERKQRLQENAVSPAFTSD 559
              Q  TPH PL  +APL     Q+  PK +      +    E Q ++   + +AV+P     
Sbjct: 220163 QGHTPHLPLRPAAPLALPRPQQGPPKIEARVQRGRCAECE*QRQRLAERRHAVAPGRLRH 220342

Query: 560    DTQDGESGGDDQ 571
                   E GGDD+
Sbjct: 220343 RHLHREYGGDDE 220378


>Cf_Contig1010  |  | 1 to 178774
          Length = 178774

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 790    PQAPPSLPTQGPSCPAEDGPPA 811
              P  PPSLP++ P CP    PPA
Sbjct: 108388 PSLPPSLPSRPPRCPPPPRPPA 108323


>Cf_Contig773  |  | 1 to 25442
          Length = 25442

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
 Frame = -1

Query: 207   KNVSTSKPEFEFTTLDFPELQGAENNMSEIQKQPK--WGPVHSVSTDISLLREVVKPAAV 264
             K VST +   E   +  PE   AE+ MSE+   P    GP    + D       VKPAA 
Sbjct: 10511 KAVSTKEVAAEALEIYNPETAEAESVMSELHVDPNEVEGPT-GATQDAESDGTEVKPAAA 10335

Query: 265   LSKGEIVVKNNPNESVTANAATNSPSCT 292
              +KGE   + N   S      TN P  +
Sbjct: 10334 GTKGE--KEENGESSSAEEKPTNEPEAS 10257


>Cf_Contig760  |  | 1 to 77080
          Length = 77080

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 780   VQQELVGEPRPQAPPSLPTQGPSCPAEDGPPA 811
             V++ +V EP P +PP  P Q P  PA+   PA
Sbjct: 50156 VRKGVVDEPAPPSPPPPPPQQPQQPAQAEAPA 50061


>Cf_Contig606  |  | 1 to 135677
          Length = 135677

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = -3

Query: 507   PLDSSAPLMKKGKQREIPKAKKPTSLKKIILKERQERKQRLQENAVSPAFTSDDTQ---D 563
             P + +     K K+     AKK     K   K+R  R+ R +E A S +  SDD +   D
Sbjct: 28143 PSEGAHSSRHKDKKHRKEHAKKDRKRDKKDKKKRSHRRHRSEEAADSASSGSDDDESGAD 27964

Query: 564   GESGGDD 570
             GES  +D
Sbjct: 27963 GESEDED 27943


>Cf_Contig941  |  | 1 to 68895
          Length = 68895

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 788   PRPQAPPSLPTQGPSCPAEDGPPA 811
             P P   P++PT  P  PA +GPPA
Sbjct: 56026 PPPAVSPAVPTPPPPPPAAEGPPA 55955


>Cf_Contig1034  |  | 1 to 274177
          Length = 274177

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 785   VGEPRPQAPPSLPTQGPSCPAEDGPPALKEKE 816
             V  PRP AP   P Q  S  +++GPP  +++E
Sbjct: 46410 VSPPRPPAPSPPPPQTWSASSQEGPPRPQQRE 46505


>Cf_Contig607  |  | 1 to 20871
          Length = 20871

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
 Frame = +3

Query: 538 KERQERKQRLQENAVSPAFTSDDTQDGESGGDDQFPEQAELSGPEG-------MDELIST 590
           +ER      + ++A S    SDD +DG+S          E S P+G        DE + T
Sbjct: 600 EERDGEHDVVGDDAKSEMAESDDAEDGDS---------VERSNPDGEEREESARDEEMPT 752

Query: 591 PSVEDKSEEPPGTELQRDTEA 611
            + E+  E   G+E + D++A
Sbjct: 753 DADEEPEEGDDGSENRADSDA 815


  Database: C.fasciculata/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 37,048,325
  Number of sequences in database:  1089
  
Lambda     K      H
   0.311    0.128    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,312,768
Number of Sequences: 1089
Number of extensions: 543518
Number of successful extensions: 4710
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 126
Number of HSP's that attempted gapping in prelim test: 3337
Number of HSP's gapped (non-prelim): 2674
length of query: 854
length of database: 12,349,441
effective HSP length: 110
effective length of query: 744
effective length of database: 12,229,651
effective search space: 9098860344
effective search space used: 9098860344
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 66 (30.0 bits)