TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) #
Homo sapiens # Complete
         (854 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330850544|gb|ADNL01000059.1| Astrammina rara contig00062, who...    28   0.85 
gi|330848818|gb|ADNL01001785.1| Astrammina rara contig02119, who...    25   7.2  
gi|330848917|gb|ADNL01001686.1| Astrammina rara contig02000, who...    25   7.2  
gi|330850390|gb|ADNL01000213.1| Astrammina rara contig00223, who...    25   7.2  
gi|330850394|gb|ADNL01000209.1| Astrammina rara contig00219, who...    25   7.2  
gi|330850421|gb|ADNL01000182.1| Astrammina rara contig00192, who...    25   7.2  
gi|330850025|gb|ADNL01000578.1| Astrammina rara contig00644, who...    24   9.4  

>gi|330850544|gb|ADNL01000059.1| Astrammina rara contig00062, whole
            genome shotgun sequence
          Length = 2381

 Score = 27.7 bits (60), Expect = 0.85
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
 Frame = +3

Query: 24   VPRFAGLNVAWLESSEACVF------PSSAATYYPFVQEPP 58
            V   AGL+V+W+E    C++      P S AT    V+ PP
Sbjct: 1638 VESLAGLSVSWIELPVLCIYI*FCRHPRSHATLPGIVRVPP 1760


>gi|330848818|gb|ADNL01001785.1| Astrammina rara contig02119, whole
           genome shotgun sequence
          Length = 241

 Score = 24.6 bits (52), Expect = 7.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 312 LSAAPKNVTSMINLKTIASSADPKNVSIPSSEALSSDP 349
           LS+ P  +  + NLK  +    P    +PS+  L+S+P
Sbjct: 44  LSSLPFTILHLFNLKVPSLKGTPSISILPSTLLLASNP 157


>gi|330848917|gb|ADNL01001686.1| Astrammina rara contig02000, whole
           genome shotgun sequence
          Length = 337

 Score = 24.6 bits (52), Expect = 7.2
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 495 GRRMSQMKTPHNPLDSSAPLMKKGKQREIPKAK 527
           G   +   TPH P   ++  +KKG++R +   K
Sbjct: 266 GNMFANCWTPHYPTSGASLSLKKGQKRAVTDIK 168


>gi|330850390|gb|ADNL01000213.1| Astrammina rara contig00223, whole
           genome shotgun sequence
          Length = 2541

 Score = 24.6 bits (52), Expect = 7.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 87  LHPYAYSPYTLDSTQNVYSVP 107
           LHPY   PY L S ++ Y+ P
Sbjct: 808 LHPYDREPYWLLSGEDAYTSP 870


>gi|330850394|gb|ADNL01000209.1| Astrammina rara contig00219, whole
            genome shotgun sequence
          Length = 6385

 Score = 24.6 bits (52), Expect = 7.2
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = -3

Query: 66   TEDMAFGASTFPPQYLSSEITLHPYAYSPYTLDSTQNVYSVPGSQYLYNQPS 117
            T D +  AST+P  Y ++       + +P   ++T    +   S YLY   S
Sbjct: 3338 TPDTSTDASTYPATYATTTPDAITISETPVISETTTTSITTTCSDYLYQLSS 3183


>gi|330850421|gb|ADNL01000182.1| Astrammina rara contig00192, whole
           genome shotgun sequence
          Length = 581

 Score = 24.6 bits (52), Expect = 7.2
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -2

Query: 399 EPPRIEDAEEFPNLAVAS 416
           +PP   D+E++PNLAV++
Sbjct: 481 KPPLSGDSEKYPNLAVSA 428


>gi|330850025|gb|ADNL01000578.1| Astrammina rara contig00644, whole
           genome shotgun sequence
          Length = 2009

 Score = 24.3 bits (51), Expect = 9.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 318 NVTSMINLKTIASSADPK 335
           ++ S+ NL T+ SSADPK
Sbjct: 100 SIXSIANLCTVISSADPK 153


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.311    0.128    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,143,985
Number of Sequences: 3231
Number of extensions: 13247
Number of successful extensions: 67
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of query: 854
length of database: 483,365
effective HSP length: 82
effective length of query: 772
effective length of database: 218,423
effective search space: 168622556
effective search space used: 168622556
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)