TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) #
Homo sapiens # Complete
         (854 letters)

Database: A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325184317|emb|FR824102.1| Albugo laibachii Nc14, genomic cont...    34   0.42 
gi|325191963|emb|FR824418.1| Albugo laibachii Nc14, genomic cont...    34   0.42 
gi|325188096|emb|FR824207.1| Albugo laibachii Nc14, genomic cont...    33   0.94 
gi|325190806|emb|FR824334.1| Albugo laibachii Nc14, genomic cont...    32   1.6  
gi|325191685|emb|FR824362.1| Albugo laibachii Nc14, genomic cont...    32   1.6  
gi|325181596|emb|FR824063.1| Albugo laibachii Nc14, genomic cont...    30   6.1  

>gi|325184317|emb|FR824102.1| Albugo laibachii Nc14, genomic contig
             CONTIG_57_NC14_v4_107809_290
          Length = 107809

 Score = 34.3 bits (77), Expect = 0.42
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 788   PRPQAPPSLPTQGPSCPAEDGPP 810
             P P APP LP + P CP  + PP
Sbjct: 28067 PPPNAPPCLPPEAPPCPPPEAPP 27999


>gi|325191963|emb|FR824418.1| Albugo laibachii Nc14, genomic contig
            CONTIG_374_NC14_v4_23191_331
          Length = 23191

 Score = 34.3 bits (77), Expect = 0.42
 Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
 Frame = -2

Query: 185  AENSLKSDGYHKRTDR-KSRIIAKNVSTSK-----PEFE-----FTTLDFPE-LQGAENN 232
            +E++ +S GY+  T   KS ++A  +S        PEFE        LDF   +Q  EN 
Sbjct: 7095 SESTWQSSGYNTTTSSSKSDLVANGLSLQNEPLEDPEFEDLFSMLHYLDFESPIQHFENT 6916

Query: 233  MSEIQKQPKWGPVHSVSTDISLLREVVKPAAVLSKGEIVVKNNPNESVTANAATNSPSCT 292
            +     +    P  ++S      +++ +   + +KG     ++PN SV   A  N   CT
Sbjct: 6915 VHIRMSESSSAPTETLSAPNDKAKKIAE-TVIENKGRRQRVSSPNPSVEPKAPLNDSLCT 6739

Query: 293  RELS 296
              +S
Sbjct: 6738 NVIS 6727


>gi|325188096|emb|FR824207.1| Albugo laibachii Nc14, genomic contig
             CONTIG_162_NC14_v4_57516_227
          Length = 57516

 Score = 33.1 bits (74), Expect = 0.94
 Identities = 20/68 (29%), Positives = 36/68 (52%)
 Frame = -3

Query: 283   NAATNSPSCTRELSWTPMGYVVRQTLSTELSAAPKNVTSMINLKTIASSADPKNVSIPSS 342
             NA  ++   T  L+WTP+ +++ +   + L+ +P   TS I+  +I S +  +   + SS
Sbjct: 35206 NAMCSTIHPTTSLTWTPVFFLLGRISLSTLAFSPIGPTSSISSISIPSVSSSEEEEVESS 35027

Query: 343   EALSSDPS 350
              A SS  S
Sbjct: 35026 TAYSSSSS 35003


>gi|325190806|emb|FR824334.1| Albugo laibachii Nc14, genomic contig
             CONTIG_289_NC14_v4_32855_229
          Length = 32855

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
 Frame = -1

Query: 273   KNNPNESVTANAAT-NSPSCTRELSWTPMGYVVRQTLSTELSAAPKNVTSMINLKTIASS 331
             KNN   S + +++T  SPSC+R+ S          TLS+   ++ ++ +S     + +SS
Sbjct: 23531 KNNRMTSSSISSSTVGSPSCSRKTS-------AHSTLSSSS*SSLESSSS-----SSSSS 23388

Query: 332   ADPKNVSIPSSEALSSDPSYNKEKHIIHPTQKSKASQGSDLEQ 374
             +   + S PSS + S   S N  +  + P+  SK+    D E+
Sbjct: 23387 SSSSSSSSPSSPSSSFSLSKNLFRRFLSPSSSSKSDVKRDEEE 23259


>gi|325191685|emb|FR824362.1| Albugo laibachii Nc14, genomic contig
             CONTIG_317_NC14_v4_29025_244
          Length = 29025

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
 Frame = +1

Query: 530   TSLKKIILKERQERKQRLQENAVSPAFTSDDTQDGESGGDDQFPEQA--ELSGPEGMDEL 587
             TS +  I K+    +  L ++      ++ D  +G +  + +  + A  E S  E M++L
Sbjct: 16618 TSRRMHISKQNTRNEHELHDSLERLLISTLDDPNGSTASEGEIDQVACSEWSAGE-MNQL 16794

Query: 588   ISTPSVEDKSEEPPGTELQRDTEASHLAPNHTT 620
             + T +VE+ S E PG+ +   +E   +   HT+
Sbjct: 16795 LETGAVEELSMERPGSNMYLFSETDQVPFRHTS 16893


>gi|325181596|emb|FR824063.1| Albugo laibachii Nc14, genomic contig
              CONTIG_18_NC14_v4_198151_220
          Length = 198151

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 19/78 (24%), Positives = 35/78 (44%)
 Frame = -3

Query: 522    EIPKAKKPTSLKKIILKERQERKQRLQENAVSPAFTSDDTQDGESGGDDQFPEQAELSGP 581
              ++P+AK+   L++   KER+E+K+  +    +P    +DT         +F    E    
Sbjct: 145547 DVPRAKRLRLLREA--KERKEKKESKESKESNPVNEKEDTVQDYDKHSPKFQPPIETESK 145374

Query: 582    EGMDELISTPSVEDKSEE 599
              E    +IS     DK ++
Sbjct: 145373 EERKVVISENEHTDKDDD 145320


  Database: A.laibachii_Nc14/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.311    0.128    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,259,698
Number of Sequences: 3816
Number of extensions: 335458
Number of successful extensions: 1545
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 94
Number of HSP's that attempted gapping in prelim test: 1064
Number of HSP's gapped (non-prelim): 822
length of query: 854
length of database: 10,913,379
effective HSP length: 109
effective length of query: 745
effective length of database: 10,497,435
effective search space: 7820589075
effective search space used: 7820589075
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)