TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000087_1.0 # Protein # SECIS binding protein 2 (SBP2) #
Drosophila melanogaster # Complete
         (313 letters)

Database: T.congolense/genome.fa 
           11 sequences; 22,287,946 total letters

Searching...........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T.congo.pschr.11                                                       31   0.73 
TcIL3000_10_v2.embl                                                    29   3.6  
T.congo.pschr.3.                                                       28   6.1  

>T.congo.pschr.11
          Length = 4797796

 Score = 31.2 bits (69), Expect = 0.73
 Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = +3

Query: 31      HRKREQQTSLLDFVIKPRPKT---QRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLDPKK 87
               HRKR   T   D    P  K       T+ HK QK H     GS+   K + + R D KK
Sbjct: 4620279 HRKRAA-THWTDLTASPPSKIFLLPFATQPHKSQKRHFTSIIGSFKKRKKRKRKREDKKK 4620455

Query: 88      KITR 91
               KI +
Sbjct: 4620456 KIKK 4620467



 Score = 30.8 bits (68), Expect = 0.95
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +3

Query: 16      TAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPKT-QRQTKAHKLQKTHLAITRGSYIV 74
               T +K  P   +++ QH++ +Q    L  +  P  +  QRQT++H+ Q T L       + 
Sbjct: 2330940 TNVKRFPPPPEHQVQHQQHQQSQRHLQPLEGP*QRVHQRQTRSHRNQPTGLRFQAAVVLY 2331119

Query: 75      YKPKGKTRLDPKK 87
               Y  +  T L PK+
Sbjct: 2331120 YIHQTPTYLYPKQ 2331158


>TcIL3000_10_v2.embl
          Length = 3612457

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
 Frame = +2

Query: 79     GKTRLDPKKKITRLKKSVRVYRTS------KKAEREVAENDLEGVPVVGQ 122
              G  ++DP+  I R K +V  YRTS        ++     NDLEG  VV +
Sbjct: 421829 GLHQIDPRTTILRSKDAVADYRTSIGLEVISSSDNTTWMNDLEGSEVVSR 421978



 Score = 28.9 bits (63), Expect = 3.6
 Identities = 40/173 (23%), Positives = 72/173 (41%)
 Frame = -1

Query: 32      RKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLDPKKKITR 91
               R R +  +L+    KPR +  R+  A  L K+     RGS     PK  T  +     + 
Sbjct: 3073459 RARVRCLNLISGRSKPRWRNSRKRSAASLPKS-----RGSAPALGPKVITARNATNFFSA 3073295

Query: 92      LKKSVRVYRTSKKAEREVAENDLEGVPVVGQDINPNAIPLEQQVQNLSLSKTPAPNNPSQ 151
               LK   R  R SKK +    +N ++      +    +   L+    + +L K   P     
Sbjct: 3073294 LKVLKRCARRSKKCDLRNLQNSMKRKRNTMRMPENSGS*LKNWPASRALKK*IGPLFI*P 3073115

Query: 152     AKTVHAIHSRRFRSYCDNCTRPRLKELSTQLLRDLDRFQKRAFAKNEIKARAH 204
               A+    +   R R+ C + + P LKE S  + R+  R+++R   ++ ++   +
Sbjct: 3073114 ARWRAVVVGSRLRNACCS-SWPSLKEPSA-ICRNSSRYRRRLMRQSTMRRHCY 3072962


>T.congo.pschr.3.
          Length = 1451265

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = -1

Query: 145     APNNPSQAKTVHAIHSRRFRSYCDNCTRPR--LKELSTQLLRDLDRFQKRAFAKNEIKAR 202
               A NN ++       H R+  S+C   TRP   L +   QL   L++ ++R       KAR
Sbjct: 1426392 ANNNNNKRTMAELTHVRK--SWC--ITRPTFLLSDFYLQLFPILEKKKQRCSNSFRSKAR 1426225

Query: 203     AHPRLVL-GVREALAR 217
               A P L+  G R+ +AR
Sbjct: 1426224 APPHLLTRGTRKGIAR 1426177



 Score = 27.7 bits (60), Expect = 8.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 22      PRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKA 57
               PR  K+    + ++  TSLLD    P P TQ++ +A
Sbjct: 1206296 PRPYKHIPSDQAKDTYTSLLDSACHPAPATQKRGRA 1206403


  Database: T.congolense/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 22,287,946
  Number of sequences in database:  11
  
Lambda     K      H
   0.319    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,663,962
Number of Sequences: 11
Number of extensions: 115166
Number of successful extensions: 690
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 592
Number of HSP's gapped (non-prelim): 235
length of query: 313
length of database: 7,429,315
effective HSP length: 98
effective length of query: 215
effective length of database: 7,428,237
effective search space: 1597070955
effective search space used: 1597070955
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)