TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000087_1.0 # Protein # SECIS binding protein 2 (SBP2) # Drosophila melanogaster # Complete (313 letters) Database: S.arctica/genome.fa 15,618 sequences; 121,588,341 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value supercont1.2309 of Sphaeroforma arctica JP610 33 0.95 supercont1.1231 of Sphaeroforma arctica JP610 32 2.8 supercont1.255 of Sphaeroforma arctica JP610 32 2.8 supercont1.238 of Sphaeroforma arctica JP610 32 2.8 supercont1.163 of Sphaeroforma arctica JP610 32 2.8 supercont1.1046 of Sphaeroforma arctica JP610 31 3.6 supercont1.92 of Sphaeroforma arctica JP610 30 6.1 supercont1.207 of Sphaeroforma arctica JP610 30 8.0 supercont1.145 of Sphaeroforma arctica JP610 30 8.0 >supercont1.2309 of Sphaeroforma arctica JP610 Length = 7466 Score = 33.1 bits (74), Expect = 0.95 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Frame = -2 Query: 126 PNAIPLEQQVQNLSLSKTPAPNNPSQAKTVHA---IHSRRFRSYCDNCTRP 173 P+ +PL +LSLS + +P++ S A+ +H +HS FR YC T P Sbjct: 2686 PSCLPLS----HLSLSLSLSPSSMSSARGIHTCYTLHSN*FRLYCPRYTLP 2546 >supercont1.1231 of Sphaeroforma arctica JP610 Length = 19075 Score = 31.6 bits (70), Expect = 2.8 Identities = 19/74 (25%), Positives = 34/74 (45%) Frame = +1 Query: 210 GVREALARLRINKVKLLFLATDCEICPGESGLDATIEGLKFQCQQQQVPYCFPLLRRELS 269 GV+E LR N+ ++ +A D S LD + C+++ +PYC+ + +L Sbjct: 15691 GVKEVAKALRKNESGIVIIAGDI------SPLDVICH-VPIMCEEKNIPYCYVPSKEQLG 15849 Query: 270 YALQKRAQICCVAI 283 A + CV + Sbjct: 15850 AAGNTKRPTSCVLV 15891 >supercont1.255 of Sphaeroforma arctica JP610 Length = 100705 Score = 31.6 bits (70), Expect = 2.8 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 13/120 (10%) Frame = -2 Query: 1 MTEKIRRS---RNQDVQDTAIKITPRSS-----KYKNQHRKREQQTSLLDFVIKPRPKTQ 52 + EK +RS R + + +++ P+ S K K +R R + L KP+ + Sbjct: 53025 LREKPKRSKSLREKPKRSNSLREKPKRSNSLREKPKRSNRLRRKPKRLKKLRRKPKKSKK 52846 Query: 53 RQTKAHKLQKTHLAITRGSYIVYKPKGKTRLDPK-KKITRL----KKSVRVYRTSKKAER 107 + + K ++ + + KPK RL K KK RL KKS R+ R KK++R Sbjct: 52845 LRRRPKKSKRLRRKPKKSKRLRRKPKKSKRLRRKPKKSKRLRRKPKKSKRLRRKPKKSKR 52666 Score = 30.4 bits (67), Expect = 6.1 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 5/109 (4%) Frame = -2 Query: 4 KIRRSRNQDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKT 63 K +RS++ + K K N R++ ++++ L KP+ + + K +L+K Sbjct: 53046 KPKRSKSLREKPKRSKSLREKPKRSNSLREKPKRSNSLRE--KPKRSNRLRRKPKRLKKL 52873 Query: 64 HLAITRGSYIVYKPKGKTRLDPK-KKITRL----KKSVRVYRTSKKAER 107 + + +PK RL K KK RL KKS R+ R KK++R Sbjct: 52872 RRKPKKSKKLRRRPKKSKRLRRKPKKSKRLRRKPKKSKRLRRKPKKSKR 52726 >supercont1.238 of Sphaeroforma arctica JP610 Length = 105144 Score = 31.6 bits (70), Expect = 2.8 Identities = 40/166 (24%), Positives = 64/166 (38%), Gaps = 31/166 (18%) Frame = +3 Query: 81 TRLDPKKKITRLKKSVRVYRTSKKAEREVAEND---LEGVPVVGQDINPNAI------PL 131 T + KK +T K V T + + V D EGVP+V + + + P Sbjct: 13761 TEKESKKTVTDKKLPPAVKLTGESGTKAVHSKDGKGSEGVPMVSKKLKTGSTSGGVVKPG 13940 Query: 132 EQQVQNLS---------------LSKTPA--PNNPSQAKTVHAIHSRRFRSYCDNC---- 170 +Q+ S ++KTPA P++ + + SY + Sbjct: 13941 KQRKTQPSKKSHGNKLVTKVTDDVAKTPALVPSSAGEPVAMATTTGSNHSSYTQHKPAPT 14120 Query: 171 -TRPRLKELSTQLLRDLDRFQKRAFAKNEIKARAHPRLVLGVREAL 215 T+P+ K LST L + A A+ + K+ A P+L VR L Sbjct: 14121 DTKPKHKSLSTDALVKSSKSAVHATARKQRKSVAKPKLTHAVRRGL 14258 >supercont1.163 of Sphaeroforma arctica JP610 Length = 129215 Score = 31.6 bits (70), Expect = 2.8 Identities = 15/59 (25%), Positives = 31/59 (52%) Frame = +1 Query: 139 SLSKTPAPNNPSQAKTVHAIHSRRFRSYCDNCTRPRLKELSTQLLRDLDRFQKRAFAKN 197 S K ++P+ ++VH++HS R CD+C + + T++L +D + A++ Sbjct: 62743 SYRKQGIKDDPTNHESVHSVHSMRGNEACDDC----MSYIHTRVLPSIDHARNTRIAQH 62907 >supercont1.1046 of Sphaeroforma arctica JP610 Length = 25021 Score = 31.2 bits (69), Expect = 3.6 Identities = 15/45 (33%), Positives = 21/45 (46%) Frame = +2 Query: 122 QDINPNAIPLEQQVQNLSLSKTPAPNNPSQAKTVHAIHSRRFRSY 166 Q +NPNA + L P+ NPS +KT H H + + Y Sbjct: 24272 QIMNPNAKAFDPSAMGLGPKAIPSQANPSSSKTEHNAHHLQQQQY 24406 >supercont1.92 of Sphaeroforma arctica JP610 Length = 160494 Score = 30.4 bits (67), Expect = 6.1 Identities = 15/52 (28%), Positives = 23/52 (44%) Frame = +1 Query: 155 VHAIHSRRFRSYCDNCTRPRLKELSTQLLRDLDRFQKRAFAKNEIKARAHPR 206 + + HS +FR YC N L + QL R++ + +E KA R Sbjct: 66685 IGSTHSAKFRGYCRNRVTKELLASTEQLTREISLMHHKKLKVDEAKANYRKR 66840 >supercont1.207 of Sphaeroforma arctica JP610 Length = 114751 Score = 30.0 bits (66), Expect = 8.0 Identities = 13/28 (46%), Positives = 21/28 (75%) Frame = -1 Query: 47 PRPKTQRQTKAHKLQKTHLAITRGSYIV 74 P PKTQ+ T+ HK+++ H IT G+++V Sbjct: 94870 PPPKTQKHTRWHKVEEDH--ITVGAWVV 94793 >supercont1.145 of Sphaeroforma arctica JP610 Length = 133936 Score = 30.0 bits (66), Expect = 8.0 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 17/64 (26%) Frame = -2 Query: 153 KTVHAIHSRRFRSYCDNCTRPRLKELSTQ-----------------LLRDLDRFQKRAFA 195 KT+H IH+ R S CD CT L E STQ +LR L FQK+ A Sbjct: 77613 KTIH-IHATRALSGCDECT--ELFEYSTQHR*YIYRTRL**KPPSHILRILAHFQKKKSA 77443 Query: 196 KNEI 199 +E+ Sbjct: 77442 TDEL 77431 Database: S.arctica/genome.fa Posted date: Nov 21, 2011 7:47 PM Number of letters in database: 121,588,341 Number of sequences in database: 15,618 Lambda K H 0.319 0.132 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,885,413 Number of Sequences: 15618 Number of extensions: 569428 Number of successful extensions: 2903 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1132 Number of HSP's successfully gapped in prelim test: 156 Number of HSP's that attempted gapping in prelim test: 1472 Number of HSP's gapped (non-prelim): 1894 length of query: 313 length of database: 40,529,447 effective HSP length: 109 effective length of query: 204 effective length of database: 38,827,085 effective search space: 7920725340 effective search space used: 7920725340 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 65 (29.6 bits)