TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000087_1.0 # Protein # SECIS binding protein 2 (SBP2) # Drosophila melanogaster # Complete (313 letters) Database: P.capsici/genome.fa 917 sequences; 64,023,748 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PHYCAscaffold_62 32 0.90 PHYCAscaffold_23 31 2.0 PHYCAscaffold_3 31 2.6 PHYCAscaffold_50 30 3.4 PHYCAscaffold_31 30 3.4 PHYCAscaffold_184 30 5.8 PHYCAscaffold_54 30 5.8 PHYCAscaffold_30 30 5.8 PHYCAscaffold_12 30 5.8 PHYCAscaffold_20 29 7.6 PHYCAscaffold_21 29 10.0 PHYCAscaffold_15 29 10.0 >PHYCAscaffold_62 Length = 322952 Score = 32.3 bits (72), Expect = 0.90 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 4/91 (4%) Frame = +3 Query: 117 VPVVGQ---DINPNA-IPLEQQVQNLSLSKTPAPNNPSQAKTVHAIHSRRFRSYCDNCTR 172 +PVV Q ++P+ + + + +Q SL+ P P + + + S R C R Sbjct: 308583 LPVVRQRVTSLSPSIMLSIRRSMQRRSLTSLPTPTSILSTTRILKMGSSMKRKLPPTCLR 308762 Query: 173 PRLKELSTQLLRDLDRFQKRAFAKNEIKARA 203 P+ + ST R L RFQ A A+ + +RA Sbjct: 308763 PKTR--STPPRRGLGRFQFEASAQR*LSSRA 308849 >PHYCAscaffold_23 Length = 821542 Score = 31.2 bits (69), Expect = 2.0 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = -1 Query: 146 PNNPSQAKTVHAIHSRRFRSYCDNCTRPRLK 176 P +PSQ + H R RS+C NC R RL+ Sbjct: 775450 PYHPSQPGSHRDRHRRHCRSHCSNCYRRRLR 775358 >PHYCAscaffold_3 Length = 1611504 Score = 30.8 bits (68), Expect = 2.6 Identities = 18/41 (43%), Positives = 25/41 (60%) Frame = -1 Query: 191 KRAFAKNEIKARAHPRLVLGVREALARLRINKVKLLFLATD 231 +RA +N+ R+ RLVLG+ E L NK+ LL +ATD Sbjct: 549516 ERAHKQNKAAVRSR-RLVLGMHEVRRGLVCNKIVLLLVATD 549397 Score = 30.4 bits (67), Expect = 3.4 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = -3 Query: 263 LLRRELSYALQKRAQICCVAILDFDGANATYADLLNE 299 +LRR+L L K +I C+ + +GAN + +L + Sbjct: 549250 VLRRKLGRILHKSVRISCIGVYSVEGANELFQQILQK 549140 >PHYCAscaffold_50 Length = 475612 Score = 30.4 bits (67), Expect = 3.4 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = +3 Query: 189 FQKRAFAKNEIKARAHPRLVLGVREALARLRINKVKLLFLA 229 F RAFAKN ++ HP L L L +N L+FL+ Sbjct: 377820 FISRAFAKNSLETLRHPYLCLQFFTQLCIFDLNHFSLIFLS 377942 >PHYCAscaffold_31 Length = 686815 Score = 30.4 bits (67), Expect = 3.4 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = -3 Query: 146 PNNPSQAKTVHAIHSRRFRSYCDNCTRPRLK 176 P +PSQ + H R RS+C NC R RL+ Sbjct: 424412 PYHPSQRVSHRDRHRRCCRSHCSNCCRRRLR 424320 >PHYCAscaffold_184 Length = 13804 Score = 29.6 bits (65), Expect = 5.8 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 11/97 (11%) Frame = +2 Query: 26 KYKNQHRKR-EQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLAITRGSYIVYKPK--GKTR 82 K++ + R+ EQQ SLL + K R + +A+ + HL R + + + K R Sbjct: 4064 KFRREERESAEQQASLLQALDKVRRSAKTIQRAYLKYRQHLQHCRDEFAARQIQHIAKRR 4243 Query: 83 LDPKKKITR------LKKSVRVY--RTSKKAEREVAE 111 D + I R L++S R Y R S+K R +A+ Sbjct: 4244 RDYNEFIKRRNAAAILQRSYRAYLNRCSRKRARTIAQ 4354 >PHYCAscaffold_54 Length = 427428 Score = 29.6 bits (65), Expect = 5.8 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Frame = +3 Query: 159 HSRRFRSYCDNCTRPRLKELSTQLLRDL--DRFQKRAFAKNEIKAR 202 H RFR + +C RP L+ ++ +L+R + R + F K I R Sbjct: 418821 HRHRFRLWAPSCLRPPLRAVALRLVRTIHGTRIRVTRFLKRRISRR 418958 >PHYCAscaffold_30 Length = 669438 Score = 29.6 bits (65), Expect = 5.8 Identities = 45/202 (22%), Positives = 79/202 (39%), Gaps = 6/202 (2%) Frame = +3 Query: 7 RSRNQDVQDTAIKITPRSSKYKNQHRKR---EQQTSLLDFVIKPRPKTQRQTKAHKLQKT 63 RSR + ++ + R S+ +++HR R ++SL T +T K +K Sbjct: 250653 RSRGRSDHSKRLRRSNRQSRSRSRHRSRSPAHHESSL---------STHDKTSREKQEKP 250805 Query: 64 HLAITRGSYIVYKPKGKTRLDPKKKITRLKKSVRVYRTSKKAEREVAENDLEGVPVVGQD 123 +PK K RL P +T K KA E E + + G Sbjct: 250806 E-----------QPKSKARLSP-AAVTEQKALPPRVIDEAKAAAEKLELERRNAFLYGNK 250949 Query: 124 INPNAIPLEQQVQNLSLSKTPAPNNPSQAKTVHAIHSRRFRSYCD---NCTRPRLKELST 180 P + + + S APN+P+++ TV +I ++ S D + + L Sbjct: 250950 -KPASPTIADIPSSSSSMVAEAPNSPTKS-TVSSISTKSSTSKEDEKAELNKLAARALRA 251123 Query: 181 QLLRDLDRFQKRAFAKNEIKAR 202 Q++ F+K NE++A+ Sbjct: 251124 QMMGKTALFRKLTEQLNELEAK 251189 Score = 29.6 bits (65), Expect = 5.8 Identities = 23/67 (34%), Positives = 32/67 (47%) Frame = -1 Query: 169 NCTRPRLKELSTQLLRDLDRFQKRAFAKNEIKARAHPRLVLGVREALARLRINKVKLLFL 228 NC RPR L++ F F + K + RL L E L L N++ +LFL Sbjct: 239781 NCCRPR-----NVLVKIFQHF----FPSTKAKESTYRRLQLPHCEILDILT-NQLDVLFL 239632 Query: 229 ATDCEIC 235 +DC+IC Sbjct: 239631 CSDCKIC 239611 >PHYCAscaffold_12 Length = 1145657 Score = 29.6 bits (65), Expect = 5.8 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 11/97 (11%) Frame = +1 Query: 26 KYKNQHRKR-EQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLAITRGSYIVYKPK--GKTR 82 K++ + R+ EQQ SLL + K R + +A+ + HL R + + + K R Sbjct: 640738 KFRREERESAEQQASLLQALDKVRRSAKTIQRAYLKYRQHLQHCRDEFAARQIQRIAKRR 640917 Query: 83 LDPKKKITR------LKKSVRVY--RTSKKAEREVAE 111 D + I R L++S R Y R S+K R +A+ Sbjct: 640918 RDYNEFIKRRNAAAILQRSYRAYLNRRSRKRARTIAQ 641028 >PHYCAscaffold_20 Length = 899172 Score = 29.3 bits (64), Expect = 7.6 Identities = 32/128 (25%), Positives = 53/128 (41%) Frame = +3 Query: 71 SYIVYKPKGKTRLDPKKKITRLKKSVRVYRTSKKAEREVAENDLEGVPVVGQDINPNAIP 130 SY+ YK +TR + + +VR Y + + E+ +E D ++ Sbjct: 84288 SYMEYKANEETRRNDR---AARAAAVREYESQTRLEQTSSERD------------DSSNT 84422 Query: 131 LEQQVQNLSLSKTPAPNNPSQAKTVHAIHSRRFRSYCDNCTRPRLKELSTQLLRDLDRFQ 190 LE + LS P+P P+ A T H+RR ++ L EL T+L + Sbjct: 84423 LELSDRGSVLSAPPSPKVPTAAPTGLGSHTRRGSGDSEDF----LAELETELHVGVSSGA 84590 Query: 191 KRAFAKNE 198 +A A +E Sbjct: 84591 AKATASSE 84614 >PHYCAscaffold_21 Length = 930814 Score = 28.9 bits (63), Expect = 10.0 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = -2 Query: 141 SKTPAPNNPSQAKTVHAIHSRRFRSYCDNCTRPRLKELSTQLLR 184 S + +P + + + +HS RS CDN R LK +T+LL+ Sbjct: 739788 SSSSSPGSSVYSSELRPVHSPAPRSICDNDGRWYLKRQATRLLQ 739657 >PHYCAscaffold_15 Length = 1032281 Score = 28.9 bits (63), Expect = 10.0 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%) Frame = -2 Query: 20 ITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQ--TKAHKLQKTHLAIT 68 I P++S N H++ E+QTS+ D +P+ + R ++AH LQ+ + T Sbjct: 98326 ILPKASLSLNSHKRPEEQTSVHD---EPQQRKSRA*ISEAHALQRREASKT 98183 Database: P.capsici/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 64,023,748 Number of sequences in database: 917 Lambda K H 0.319 0.132 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,922,904 Number of Sequences: 917 Number of extensions: 324573 Number of successful extensions: 1984 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 77 Number of HSP's successfully gapped in prelim test: 48 Number of HSP's that attempted gapping in prelim test: 1452 Number of HSP's gapped (non-prelim): 1075 length of query: 313 length of database: 21,341,249 effective HSP length: 105 effective length of query: 208 effective length of database: 21,244,964 effective search space: 4418952512 effective search space used: 4418952512 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 63 (28.9 bits)