TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000087_1.0 # Protein # SECIS binding protein 2 (SBP2) # Drosophila melanogaster # Complete (313 letters) Database: L.tarentolae/genome.fa 7267 sequences; 31,598,840 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Lt_contig7086 | | 1 to 6148 47 1e-05 Lt_contig4452 | | 1 to 1961 32 0.56 Lt_contig1990 | | 1 to 552 31 0.95 Lt_contig6206 | | 1 to 5292 30 1.6 Lt_contig5388 | | 1 to 3511 30 2.1 Lt_contig1378 | | 1 to 4639 30 2.8 Lt_contig6886 | | 1 to 10850 30 2.8 Lt_contig5192 | | 1 to 6578 29 3.6 Lt_contig5280 | | 1 to 3308 29 4.7 Lt_contig289 | | 1 to 16408 28 6.2 Lt_contig5511 | | 1 to 8873 28 8.1 >Lt_contig7086 | | 1 to 6148 Length = 6148 Score = 47.4 bits (111), Expect = 1e-05 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 6/96 (6%) Frame = +1 Query: 144 PAPNNPSQAKTVHAIHSRRFRS------YCDNCTRPRLKELSTQLLRDLDRFQKRAFAKN 197 PAP++ S KT + R +S YC N L +L LL+ L + Q+ K Sbjct: 1099 PAPSS-SPPKTALSRSQRAMKSSLFAAAYCTNVLTDALDDLCFTLLQGLYKEQRDLKQKQ 1275 Query: 198 EIKARAHPRLVLGVREALARLRINKVKLLFLATDCE 233 ++ +A R V+G +EAL L+ +V+L+ LATD E Sbjct: 1276 PLQFKARQRYVVGFQEALKCLKAGRVRLVLLATDVE 1383 >Lt_contig4452 | | 1 to 1961 Length = 1961 Score = 32.0 bits (71), Expect = 0.56 Identities = 16/51 (31%), Positives = 28/51 (54%) Frame = -2 Query: 47 PRPKTQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLDPKKKITRLKKSVR 97 P+ +R TKAH+ + T + RG ++ + +TR K+ + KKS+R Sbjct: 1273 PKQLKRRSTKAHRRKSTSACVGRGERRIHGSQERTRR*RYKENPKQKKSIR 1121 >Lt_contig1990 | | 1 to 552 Length = 552 Score = 31.2 bits (69), Expect = 0.95 Identities = 24/103 (23%), Positives = 44/103 (42%) Frame = -1 Query: 28 KNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLDPKK 87 K H++ +LL V PRP+T+++ +AH+ + + A RG+ + K Sbjct: 498 KEGHKQENAHRALLHHV--PRPRTRQRVRAHRSRSSTCATLRGT------------ECKA 361 Query: 88 KITRLKKSVRVYRTSKKAEREVAENDLEGVPVVGQDINPNAIP 130 + T ++ ++TS A+ A D + G P P Sbjct: 360 RATAQERVPYAHQTSAAAKAGAARGDRQRERGEGGPYEPQEEP 232 >Lt_contig6206 | | 1 to 5292 Length = 5292 Score = 30.4 bits (67), Expect = 1.6 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%) Frame = -2 Query: 252 CQQQQVPYCFPLLR-----RELSYALQKRAQICCVAILDF 286 C + VP CFPLL R+++ + A CC+A+ F Sbjct: 3668 CSLRGVPRCFPLLH*AKCVRQMNRHMTSHAHRCCIALSPF 3549 >Lt_contig5388 | | 1 to 3511 Length = 3511 Score = 30.0 bits (66), Expect = 2.1 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = +1 Query: 224 KLLFLA-TDCEICPGESGLDATIEGLKFQCQQQQVPY 259 KL+FL + ++C G++ T E L Q QQQ+ PY Sbjct: 2854 KLIFLVPSSADVCLGKAAPHTTRERLDMQTQQQEKPY 2964 >Lt_contig1378 | | 1 to 4639 Length = 4639 Score = 29.6 bits (65), Expect = 2.8 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 6/74 (8%) Frame = -1 Query: 49 PKTQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLDPKKKITRLKKSVRV------YRTS 102 P T Q K ++TH+A R K +G+ R R+++ VRV RT Sbjct: 745 PSTPEQAHKFKTRRTHIAGQRARGPRTKQRGRGRKKDSIYRVRVRRPVRVCESTARTRTR 566 Query: 103 KKAEREVAENDLEG 116 +AER + E G Sbjct: 565 TRAER*LTEGHARG 524 >Lt_contig6886 | | 1 to 10850 Length = 10850 Score = 29.6 bits (65), Expect = 2.8 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 5/34 (14%) Frame = +1 Query: 138 LSLSKTPAPNNPSQAKTVH-----AIHSRRFRSY 166 +SLS P+P NP+ A+T H ++ S RFRS+ Sbjct: 3499 VSLSTPPSPRNPTDAQTRHHPTRLSLSSLRFRSH 3600 >Lt_contig5192 | | 1 to 6578 Length = 6578 Score = 29.3 bits (64), Expect = 3.6 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = -3 Query: 240 GLDATIEGLKFQC-QQQQVPYCFPLLRRELSYALQKRAQICCVAI 283 G +++ EG C +Q+ P C+ LRR S ++ +R CC+ I Sbjct: 2445 GRNSSSEGTHGNCLHRQRGPGCYRTLRRRSS*SVARRCSRCCLPI 2311 >Lt_contig5280 | | 1 to 3308 Length = 3308 Score = 28.9 bits (63), Expect = 4.7 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%) Frame = +2 Query: 6 RRSRNQDVQDTAIKITPRSSKYKNQHRK-REQQTSLLDFVIKP---RPKTQRQTKAHKLQ 61 RRS DV + TPR + + + RK E++ L ++ P P+ RQ +A+ + Sbjct: 2258 RRSTRCDVSGICHRCTPRRGRQRRRARKGGEERARTLSRIVSPFVLSPRRLRQKRAY-AR 2434 Query: 62 KTHL 65 THL Sbjct: 2435 STHL 2446 >Lt_contig289 | | 1 to 16408 Length = 16408 Score = 28.5 bits (62), Expect = 6.2 Identities = 24/95 (25%), Positives = 40/95 (42%) Frame = +3 Query: 46 KPRPKTQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLDPKKKITRLKKSVRVYRTSKKA 105 + R + +++T+ H + HLA P+ R P+K + L +R + Sbjct: 14565 RKRWQIKKKTRCHPWKLWHLAR*EFQLAQMNPRDSGRTSPRKHLNFL----HFFRKAVYI 14732 Query: 106 EREVAENDLEGVPVVGQDINPNAIPLEQQVQNLSL 140 +R V LE + +D N N P+E Q L L Sbjct: 14733 KRSVLNRILEAL----EDNNSNETPVEHVHQMLHL 14825 >Lt_contig5511 | | 1 to 8873 Length = 8873 Score = 28.1 bits (61), Expect = 8.1 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = -3 Query: 217 RLRINKVKLLFLATDCEICPGESGLDATIEGLKFQCQQQQVP 258 R R + +L A E+C G G A G+ F+C+ Q+P Sbjct: 7956 RTRPMPLLVLLSAATAEVCDGLRGRSAPPLGIPFRCRAVQMP 7831 Database: L.tarentolae/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 31,598,840 Number of sequences in database: 7267 Lambda K H 0.319 0.132 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,853,432 Number of Sequences: 7267 Number of extensions: 188819 Number of successful extensions: 1313 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 975 Number of HSP's successfully gapped in prelim test: 53 Number of HSP's that attempted gapping in prelim test: 298 Number of HSP's gapped (non-prelim): 1100 length of query: 313 length of database: 10,532,946 effective HSP length: 99 effective length of query: 214 effective length of database: 9,813,513 effective search space: 2100091782 effective search space used: 2100091782 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 60 (27.7 bits)