TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000087_1.0 # Protein # SECIS binding protein 2 (SBP2) # Drosophila melanogaster # Complete (313 letters) Database: L.donovani_BPK282A1/genome.fa 36 sequences; 32,444,998 total letters Searching....................................done Score E Sequences producing significant alignments: (bits) Value contig_34 32 0.80 contig_31 32 0.80 contig_35 31 1.0 contig_29 31 1.4 contig_18 31 1.4 contig_32 30 3.0 contig_26 30 3.0 contig_36 29 5.2 contig_19 29 5.2 contig_17 29 5.2 contig_20 28 8.9 >contig_34 Length = 1750858 Score = 31.6 bits (70), Expect = 0.80 Identities = 27/97 (27%), Positives = 42/97 (43%) Frame = +3 Query: 22 PRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLAITRGSYIVYKPKGKT 81 P + + HR +EQQ S ++ + P T+ + AH + + A+ G + K Sbjct: 728736 PTTLSTRQTHRSKEQQNSKINPRMNAAPYTKMEMMAHPCARRNRAMREGHF--SKDTSTV 728909 Query: 82 RLDPKKKITRLKKSVRVYRTSKKAEREVAENDLEGVP 118 R K+K +RLK RV K + N GVP Sbjct: 728910 RT*FKEKQSRLKPH-RVMHWPTKTLLLLLRNMSIGVP 729017 Score = 31.6 bits (70), Expect = 0.80 Identities = 27/97 (27%), Positives = 42/97 (43%) Frame = +2 Query: 22 PRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLAITRGSYIVYKPKGKT 81 P + + HR +EQQ S ++ + P T+ + AH + + A+ G + K Sbjct: 729425 PTTLSTRQTHRSKEQQNSKINPRMNAAPYTKMEMMAHPCARRNRAMREGHF--SKDTSTV 729598 Query: 82 RLDPKKKITRLKKSVRVYRTSKKAEREVAENDLEGVP 118 R K+K +RLK RV K + N GVP Sbjct: 729599 RT*FKEKQSRLKPH-RVMHWPTKTLLLLLRNMSIGVP 729706 Score = 28.1 bits (61), Expect = 8.9 Identities = 11/35 (31%), Positives = 23/35 (65%) Frame = -3 Query: 21 TPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQT 55 TPR +KYK + +KR++ + V++ + + +R+T Sbjct: 1341281 TPRETKYKREKKKRQRGGAT*KEVVRAKRRNKRKT 1341177 >contig_31 Length = 1531288 Score = 31.6 bits (70), Expect = 0.80 Identities = 29/133 (21%), Positives = 52/133 (39%) Frame = +1 Query: 2 TEKIRRSRNQDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQ 61 TE R + Q + +K S +QHR++++++ TQR K++ Sbjct: 579838 TETSTDRRVEGAQSSTMKYLSPSRVSTSQHREKKKESR------GGETNTQRNNHNKKIE 579999 Query: 62 KTHLAITRGSYIVYKPKGKTRLDPKKKITRLKKSVRVYRTSKKAEREVAENDLEGVPVVG 121 + I YI +GK + K S R +KKA ++ + + E Sbjct: 580000 NIRVYIYMYIYIYVGDRGKRETGARWKE*ESTVSSRHRSVTKKATKKKKKRETEHTRGFE 580179 Query: 122 QDINPNAIPLEQQ 134 +D IP +Q+ Sbjct: 580180 EDAKKQMIPSDQR 580218 >contig_35 Length = 2113966 Score = 31.2 bits (69), Expect = 1.0 Identities = 16/62 (25%), Positives = 30/62 (48%) Frame = -3 Query: 3 EKIRRSRNQDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQK 62 EK RR + + +SK++ + +KR+ T+ + +IKP K ++ +K Sbjct: 1595468 EKRRRR*THRHEHARRDVMISASKHQRKKKKRKHNTAHMIVIIKPAQKAAKKASENKASS 1595289 Query: 63 TH 64 TH Sbjct: 1595288 TH 1595283 Score = 29.6 bits (65), Expect = 3.0 Identities = 43/190 (22%), Positives = 69/190 (36%), Gaps = 24/190 (12%) Frame = -1 Query: 1 MTEKIRRSRNQDVQDTAIKITPRSSKYKNQHRKREQQTS-------LLDFVIKPRPKTQR 53 MTE + +++ + K+TP+S H KR S L F P P Sbjct: 269896 MTETSTKRGSEETKHANHKVTPKSENLHGTHAKRSGAPSPSAAVARRLSFSRFPHPLPSL 269717 Query: 54 QTKAHKL------QKTHLAITRGSYIVYKPKGKTRLDPKKKITRLKKSVRVYRTSKKAER 107 + Q+ H+ I V +G T LD ++ T+ + R S+K ER Sbjct: 269716 LVAGGQCRCSPARQQ*HVCI-----CVSTGRGATPLDHHREPTKRRNRARSRGGSEKNER 269552 Query: 108 ----------EVAENDLEGVPVVGQDI-NPNAIPLEQQVQNLSLSKTPAPNNPSQAKTVH 156 + A+N+ V+G+ + P P + + PAP SQ Sbjct: 269551 RESIGSCAHTQPAKNETAVTIVLGKHVPAPTTRPTHKHAHTI-----PAPPTSSQETREE 269387 Query: 157 AIHSRRFRSY 166 S RF ++ Sbjct: 269386 GRGSGRFHTH 269357 Score = 28.9 bits (63), Expect = 5.2 Identities = 17/56 (30%), Positives = 24/56 (42%) Frame = +2 Query: 126 PNAIPLEQQVQNLSLSKTPAPNNPSQAKTVHAIHSRRFRSYCDNCTRPRLKELSTQ 181 P A ++Q+Q L L P P + A T + FR RP+ KE + Q Sbjct: 29102 PTATRRQRQLQTLHLQLPPLPGTDAPASTRCFASATSFRRIQKRTARPQTKESTRQ 29269 >contig_29 Length = 1258350 Score = 30.8 bits (68), Expect = 1.4 Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 2/116 (1%) Frame = +3 Query: 4 KIRRSRNQDVQDTAIKITPRSSKYKNQ-HRKREQQTSLLDFVIKPRPKT-QRQTKAHKLQ 61 K+R+SR A+ R S ++ + HR L + I P T R+++ H + Sbjct: 879144 KVRKSRQ------AVPGVLRLSVWQRRYHRSTPHFARLCNGNIHPCHSTFTRRSRGHHRK 879305 Query: 62 KTHLAITRGSYIVYKPKGKTRLDPKKKITRLKKSVRVYRTSKKAEREVAENDLEGV 117 T LA R S K KT P K I + KSV +K + E D EGV Sbjct: 879306 STSLAAAR*SR--EKSISKTEQSPPKIIIKRTKSVCSTERKRKKKHEDGGKDEEGV 879467 Score = 28.9 bits (63), Expect = 5.2 Identities = 21/66 (31%), Positives = 31/66 (46%) Frame = -2 Query: 158 IHSRRFRSYCDNCTRPRLKELSTQLLRDLDRFQKRAFAKNEIKARAHPRLVLGVREALAR 217 + RRFR+ C T P + +L + + R QKR K A RL V AL++ Sbjct: 804701 VGERRFRASCTRYTNPTVHKLFCAVSFEGHRDQKRE------KGEAWQRLHFTVHCALSQ 804540 Query: 218 LRINKV 223 +RI + Sbjct: 804539 MRIRSL 804522 >contig_18 Length = 735640 Score = 30.8 bits (68), Expect = 1.4 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 9/64 (14%) Frame = -2 Query: 4 KIRRSRNQDVQDTAIKITPRSSKYKNQHRKREQQTSLLD---------FVIKPRPKTQRQ 54 ++RR+++ VQ A ++TP SK + QH++R Q +LL+ V + RP+ R Sbjct: 673719 QVRRAQHHRVQRIARRLTPLRSK-RRQHQRRFQIVALLEREALLLDLHLVQRQRPRLVRA 673543 Query: 55 TKAH 58 H Sbjct: 673542 QHVH 673531 >contig_32 Length = 1559911 Score = 29.6 bits (65), Expect = 3.0 Identities = 22/67 (32%), Positives = 29/67 (43%) Frame = -3 Query: 140 LSKTPAPNNPSQAKTVHAIHSRRFRSYCDNCTRPRLKELSTQLLRDLDRFQKRAFAKNEI 199 +SKT P+NP T H S R++C + R R S R L R R F+ Sbjct: 105965 VSKTSRPSNPWPHYTRHCAVSMLARTHCWSADRVRRLSCSVY*TRPLWRRTTRRFSHLRR 105786 Query: 200 KARAHPR 206 +A A R Sbjct: 105785 RALAQAR 105765 >contig_26 Length = 1058259 Score = 29.6 bits (65), Expect = 3.0 Identities = 18/68 (26%), Positives = 31/68 (45%) Frame = -3 Query: 118 PVVGQDINPNAIPLEQQVQNLSLSKTPAPNNPSQAKTVHAIHSRRFRSYCDNCTRPRLKE 177 P + + NP A + + + L P+P P++A V R R + +C R ++ Sbjct: 944395 PELSRSTNPCAAQVRSRTAQMHLPPPPSPRQPARA--VACRR*RCQRGHRSSCRRSHMRR 944222 Query: 178 LSTQLLRD 185 LS Q +D Sbjct: 944221 LSRQAGQD 944198 >contig_36 Length = 2713248 Score = 28.9 bits (63), Expect = 5.2 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = +1 Query: 135 VQNLSLSKTPAPNNPSQAKTVHAIHSRRFRSYC 167 V LSL P PN P ++ +H H+ R R C Sbjct: 2340019 VPYLSLGFPPPPNRPRKS*ALHGTHTERKRERC 2340117 >contig_19 Length = 757180 Score = 28.9 bits (63), Expect = 5.2 Identities = 31/98 (31%), Positives = 40/98 (40%), Gaps = 1/98 (1%) Frame = +3 Query: 143 TPAPNNPSQAKTVHAIHSR-RFRSYCDNCTRPRLKELSTQLLRDLDRFQKRAFAKNEIKA 201 T P Q +T IH++ R R C RP ST RDL R ++R A Sbjct: 502308 TRQATTPPQRRTPTRIHTQCRSRINC----RPTSCH-STPTARDLIRCRRRWTRMCSRSA 502472 Query: 202 RAHPRLVLGVREALARLRINKVKLLFLATDCEICPGES 239 P L L R A RLR ++L + +CP S Sbjct: 502473 SRSPMLHLVTRFAPRRLRWGALRLALTSRHL*LCPRRS 502586 >contig_17 Length = 671483 Score = 28.9 bits (63), Expect = 5.2 Identities = 17/51 (33%), Positives = 28/51 (54%) Frame = +1 Query: 50 KTQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLDPKKKITRLKKSVRVYR 100 + R+TKA + + A+ G I K G TR +PK++ R + VR+Y+ Sbjct: 252604 RKSRKTKAARTTRRRRAMAVGEEI--KGGGNTRGEPKEQKQRARVKVRLYK 252750 >contig_20 Length = 752621 Score = 28.1 bits (61), Expect = 8.9 Identities = 20/65 (30%), Positives = 27/65 (41%) Frame = -1 Query: 117 VPVVGQDINPNAIPLEQQVQNLSLSKTPAPNNPSQAKTVHAIHSRRFRSYCDNCTRPRLK 176 VP + P+ P + L TP N+P +AI R C NC+RPR Sbjct: 716036 VPCCAPSMMPSPTPCAMPTR-LRH*STPRCNSPP-----YAIDPSHRRGICRNCSRPRYA 715875 Query: 177 ELSTQ 181 ST+ Sbjct: 715874 RRSTR 715860 Database: L.donovani_BPK282A1/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 32,444,998 Number of sequences in database: 36 Lambda K H 0.319 0.132 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,383,575 Number of Sequences: 36 Number of extensions: 203189 Number of successful extensions: 1546 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 1349 Number of HSP's gapped (non-prelim): 566 length of query: 313 length of database: 10,814,999 effective HSP length: 100 effective length of query: 213 effective length of database: 10,811,399 effective search space: 2302827987 effective search space used: 2302827987 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 61 (28.1 bits)