TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000087_1.0 # Protein # SECIS binding protein 2 (SBP2) #
Drosophila melanogaster # Complete
         (313 letters)

Database: I.multifiliis_strain_G5/genome.fa 
           2017 sequences; 48,799,969 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|340505066|gb|GL983863.1| Ichthyophthirius multifiliis unplace...    35   0.11 
gi|340500671|gb|GL984354.1| Ichthyophthirius multifiliis unplace...    35   0.14 
gi|340499670|gb|GL984683.1| Ichthyophthirius multifiliis unplace...    33   0.40 
gi|340503780|gb|GL984017.1| Ichthyophthirius multifiliis unplace...    30   2.6  
gi|340506345|gb|GL983651.1| Ichthyophthirius multifiliis unplace...    28   9.9  

>gi|340505066|gb|GL983863.1| Ichthyophthirius multifiliis unplaced
             genomic scaffold scaff_1120509250899, whole genome shotgun
             sequence
          Length = 21331

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 32/109 (29%), Positives = 49/109 (44%)
 Frame = -1

Query: 3     EKIRRSRNQDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQK 62
             EK RR   +  +    +   R +K K + RK+E++   +   I+ R K +R+ +  K +K
Sbjct: 10813 EKTRRRIKEKTRRRIKEKIRRRTKEKRRRRKKEKRRKRIKEKIRRRTKEKRRRR--KKEK 10640

Query: 63    THLAITRGSYIVYKPKGKTRLDPKKKITRLKKSVRVYRTSKKAEREVAE 111
             T   I     I  + K KTR   KKK  R  K     R  +K  R + E
Sbjct: 10639 TRKRIKEK--IRRRIKKKTRRRIKKKTRRRIKEKTRRRIKEKTRRRIKE 10499


>gi|340500671|gb|GL984354.1| Ichthyophthirius multifiliis unplaced
             genomic scaffold scaff_1120509251393, whole genome shotgun
             sequence
          Length = 34020

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 24/80 (30%), Positives = 37/80 (46%)
 Frame = -1

Query: 210   GVREALARLRINKVKLLFLATDCEICPGESGLDATIEGLKFQCQQQQVPYCFPLLRRELS 269
             GV E L  L     +L+ LA DC+  P E      +  L  +C+++ VPYCF   +  L 
Sbjct: 33201 GVNEVLKCLNKGVSELVILAADCD--PLE-----IVMNLPGECEEKNVPYCFVSSKSALG 33043

Query: 270   YALQKRAQICCVAILDFDGA 289
              A   +  I    I+  +G+
Sbjct: 33042 RACGIKRPIVAATIILHEGS 32983


>gi|340499670|gb|GL984683.1| Ichthyophthirius multifiliis unplaced
            genomic scaffold scaff_5255, whole genome shotgun
            sequence
          Length = 1277

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 23/75 (30%), Positives = 34/75 (45%)
 Frame = +2

Query: 210  GVREALARLRINKVKLLFLATDCEICPGESGLDATIEGLKFQCQQQQVPYCFPLLRRELS 269
            GV E L  L     +L+ LA DC+  P E      +  L  +C+++ VPYCF   +  L 
Sbjct: 1073 GVNEVLKCLNKGVSELVILAADCD--PLE-----IVMNLPGECEEKNVPYCFVSSKSALG 1231

Query: 270  YALQKRAQICCVAIL 284
             A   +  I    I+
Sbjct: 1232 RACGIKRPIVAATII 1276


>gi|340503780|gb|GL984017.1| Ichthyophthirius multifiliis unplaced
             genomic scaffold scaff_1120509251055, whole genome shotgun
             sequence
          Length = 35987

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
 Frame = +1

Query: 19    KITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLAITRGSYIVYKPK 78
             K + +  K+K + + ++++ S      K + K +++ K  K +K    +     + ++PK
Sbjct: 19129 KKSKKKKKFKKKKKSKKKKKS------KKKKKFKKKKKVKKKKKFKKKMKFRPKMKFRPK 19290

Query: 79    GKTR----LDPKKKITRLKKSVRVYRTSKK 104
              K R      PKKK  + KKS +  ++ KK
Sbjct: 19291 KKFRKKKKFRPKKKSKKKKKSKKKKKSKKK 19380


>gi|340506345|gb|GL983651.1| Ichthyophthirius multifiliis unplaced
            genomic scaffold scaff_1120509250537, whole genome
            shotgun sequence
          Length = 20713

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = -2

Query: 71   SYIVYKPKGKTRLDPKKKITRLKKSVRVYRTSKKAEREVAENDLEGVPVVGQDINPNAIP 130
            SYI YK K    +  KKK+T  KK  ++    KK       N+     +  +++N N + 
Sbjct: 1392 SYINYKQKNILIIIKKKKLTTYKKKKKI--PKKKICLTPNNNNKLSTVITSKEMNANTVK 1219

Query: 131  LE 132
            L+
Sbjct: 1218 LQ 1213


  Database: I.multifiliis_strain_G5/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 48,799,969
  Number of sequences in database:  2017
  
Lambda     K      H
   0.319    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,116,233
Number of Sequences: 2017
Number of extensions: 111124
Number of successful extensions: 381
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 316
Number of HSP's gapped (non-prelim): 103
length of query: 313
length of database: 16,266,656
effective HSP length: 103
effective length of query: 210
effective length of database: 16,058,905
effective search space: 3372370050
effective search space used: 3372370050
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)