TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000087_1.0 # Protein # SECIS binding protein 2 (SBP2) #
Drosophila melanogaster # Complete
         (313 letters)

Database: G.niphandrodes/genome.fa 
           3680 sequences; 15,362,869 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|338241155|gb|AFNH01002589.1| Gregarina niphandrodes asmbl.331...    35   0.043
gi|338241217|gb|AFNH01002558.1| Gregarina niphandrodes asmbl.328...    31   0.62 
gi|338240903|gb|AFNH01002715.1| Gregarina niphandrodes asmbl.343...    30   0.81 
gi|338241752|gb|AFNH01002289.1| Gregarina niphandrodes asmbl.303...    28   3.1  
gi|338245227|gb|AFNH01000551.1| Gregarina niphandrodes asmbl.149...    28   3.1  
gi|338239670|gb|AFNH01003331.1| Gregarina niphandrodes asmbl.682...    28   4.0  
gi|338243614|gb|AFNH01001358.1| Gregarina niphandrodes asmbl.218...    27   6.8  
gi|338240668|gb|AFNH01002832.1| Gregarina niphandrodes asmbl.354...    27   8.9  
gi|338241374|gb|AFNH01002478.1| Gregarina niphandrodes asmbl.321...    27   8.9  
gi|338241586|gb|AFNH01002372.1| Gregarina niphandrodes asmbl.311...    27   8.9  
gi|338242740|gb|AFNH01001795.1| Gregarina niphandrodes asmbl.258...    27   8.9  
gi|338243779|gb|AFNH01001275.1| Gregarina niphandrodes asmbl.211...    27   8.9  
gi|338244957|gb|AFNH01000686.1| Gregarina niphandrodes asmbl.159...    27   8.9  

>gi|338241155|gb|AFNH01002589.1| Gregarina niphandrodes asmbl.3316,
             whole genome shotgun sequence
          Length = 40236

 Score = 34.7 bits (78), Expect = 0.043
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +3

Query: 126   PNAIPLEQQVQNLSLSKTPAPN---NPSQAKTVHAIHSRRFRSYCDNCTRPR 174
             P   PL  Q +N    ++PA     NP ++   H +  RR RS+C  C R R
Sbjct: 22983 PTCPPLHLQTRNWHAGRSPAQRPIPNPPRSVQSHCVR*RRVRSHCVRCRRVR 23138


>gi|338241217|gb|AFNH01002558.1| Gregarina niphandrodes asmbl.3288,
             whole genome shotgun sequence
          Length = 45373

 Score = 30.8 bits (68), Expect = 0.62
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = -2

Query: 99    YRTSKKAEREVAENDLEGVPVVGQDIN-PNAIPLEQQVQNLSLSKTPAPNNPSQAKTVHA 157
             + T  K E+ +  ++   +P V +  N  N I LE +  NL L     P+ PS    VH 
Sbjct: 40575 HNTEVKWEKSMTFDE---IPEVAEMNNCDNVIFLEARKLNLYLHLAKCPHGPSVKFQVHN 40405

Query: 158   IHSRRFRSYCDNCTR 172
             IH+    ++  NC +
Sbjct: 40404 IHTMESVNFIGNCLK 40360


>gi|338240903|gb|AFNH01002715.1| Gregarina niphandrodes asmbl.3434,
            whole genome shotgun sequence
          Length = 17044

 Score = 30.4 bits (67), Expect = 0.81
 Identities = 15/30 (50%), Positives = 22/30 (73%)
 Frame = +1

Query: 91   RLKKSVRVYRTSKKAEREVAENDLEGVPVV 120
            +L+ SV++ R +KKAER  AE + EGV +V
Sbjct: 4927 KLRLSVQLRRETKKAERGKAEEEYEGVGLV 5016


>gi|338241752|gb|AFNH01002289.1| Gregarina niphandrodes asmbl.3037,
            whole genome shotgun sequence
          Length = 10122

 Score = 28.5 bits (62), Expect = 3.1
 Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 11/166 (6%)
 Frame = +3

Query: 92   LKKSVRVYRTSKKAEREVAENDLEGVPVVGQDINPNAIPLEQQV--QNLS-LSKTPAPNN 148
            +++  R+++ +         +  EG P+    I    I   Q+V  Q++S L  TP    
Sbjct: 9273 IRRPPRLFKATSMINSGHVSDAFEGPPLPFNIIWRLHIRARQRVWTQHVSALVSTPQTLI 9452

Query: 149  PSQAKTVHAI-HSRRFRSYCDNCTRPRLKELSTQLLRDLDRFQKRAFAKNEIKARAHPRL 207
             +  K+   + HSR+F    +  T+PR  E S +    +     R+        R  P  
Sbjct: 9453 GAPGKSAQIVSHSRQFSHAAEPSTKPRFAEASAR-SEPVRAVPLRSEPVRPEPVRPEPVR 9629

Query: 208  VLGVREALARL-------RINKVKLLFLATDCEICPGESGLDATIE 246
              GV EA   +       R++K K  +  TD E  P  +GL ++ E
Sbjct: 9630 ESGVGEADREMNTSSDGGRVSKDKAEYSRTDVEPKPVAAGLSSSRE 9767


>gi|338245227|gb|AFNH01000551.1| Gregarina niphandrodes asmbl.1494,
            whole genome shotgun sequence
          Length = 1246

 Score = 28.5 bits (62), Expect = 3.1
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -1

Query: 11   QDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAH 58
            Q+V  T  +I PR  + ++  R + Q T+       PRP TQR T +H
Sbjct: 1246 QEVVRTHSRIRPRRPRDRSPRRTQPQPTT----PPAPRPPTQRPTASH 1115


>gi|338239670|gb|AFNH01003331.1| Gregarina niphandrodes asmbl.682,
            whole genome shotgun sequence
          Length = 3303

 Score = 28.1 bits (61), Expect = 4.0
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +2

Query: 107  REVAENDLEGVPVVGQDINPNAIPLEQQVQNLSLSKTPAPNNPSQAKTVHAIHSRRFR 164
            + V E  +  +     DI  N +P++  V   ++  TPAP  P   K +    SRR R
Sbjct: 1415 KPVLEIRITDLDKASPDILVNGVPVDPTVSTQAVEVTPAPAIP*TVKALDGQDSRRPR 1588


>gi|338243614|gb|AFNH01001358.1| Gregarina niphandrodes asmbl.2188,
           whole genome shotgun sequence
          Length = 1571

 Score = 27.3 bits (59), Expect = 6.8
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 12/107 (11%)
 Frame = +3

Query: 137 NLSLSKTPAPNNPSQAKTVHA---IHSR---------RFRSYCDNCTRPRLKELSTQLLR 184
           N S  +TP  + P++  + H     HS          R RS C +   P+    + + ++
Sbjct: 12  NSSPHRTPLTSLPNERISYHQKKKSHSPQIVPRGPLYRVRSVCRHVALPKYHGRTPKTMK 191

Query: 185 DLDRFQKRAFAKNEIKARAHPRLVLGVREALARLRINKVKLLFLATD 231
            +DR   +       +  ++P   L +R    R+  +   LLF+ TD
Sbjct: 192 QIDRTWTKTLLDQGKELPSNPNFTLPLRIVKDRVTHDCRPLLFITTD 332


>gi|338240668|gb|AFNH01002832.1| Gregarina niphandrodes asmbl.3545,
            whole genome shotgun sequence
          Length = 6341

 Score = 26.9 bits (58), Expect = 8.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 16   TAIKITPRSSKYKNQHRK 33
            T + +TPR S YKN H K
Sbjct: 5758 TILSLTPRQSLYKNSHHK 5811


>gi|338241374|gb|AFNH01002478.1| Gregarina niphandrodes asmbl.3214,
            whole genome shotgun sequence
          Length = 17693

 Score = 26.9 bits (58), Expect = 8.9
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
 Frame = +3

Query: 217  RLRINKVKLLFLATDCEICPGESGLDATIEGLKFQCQ---------QQQVPYCFPLLRRE 267
            RLR  + K  F A    + PG+S LD   + ++   +          Q  P   P+L R 
Sbjct: 8466 RLRATQTKSGFEAESWSLVPGDSALDERGKNVRASLRLWRQMLDNMAQLRPVYIPVLGRR 8645

Query: 268  LSYALQKRAQICCVAILDFDGANA 291
             ++A   R   C +   DF+  NA
Sbjct: 8646 AAFAKSAR---CRLFKSDFEAHNA 8708


>gi|338241586|gb|AFNH01002372.1| Gregarina niphandrodes asmbl.3116,
            whole genome shotgun sequence
          Length = 12221

 Score = 26.9 bits (58), Expect = 8.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 47   PRPKTQRQTKAHKLQKTH 64
            PRP+T +QT  H LQK H
Sbjct: 5125 PRPETAKQTCNHVLQKLH 5178


>gi|338242740|gb|AFNH01001795.1| Gregarina niphandrodes asmbl.2589,
             whole genome shotgun sequence
          Length = 34199

 Score = 26.9 bits (58), Expect = 8.9
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
 Frame = -1

Query: 3     EKIRRSRNQDVQDTAIKITPRSSKYKNQHRK--------REQQTSLLDFVIKPRPKTQRQ 54
             +  + ++N+  +DT  K T + +  KN +R         + +        +KP+P+  R 
Sbjct: 21266 DNYKDNQNRHSKDTC*KNTYQKTPIKNNNRTPHKTAKSTKSEPMKGKQIDLKPQPRITRS 21087

Query: 55    TKAHKLQ 61
             T+ HK++
Sbjct: 21086 TRQHKVE 21066


>gi|338243779|gb|AFNH01001275.1| Gregarina niphandrodes asmbl.2111,
           whole genome shotgun sequence
          Length = 1018

 Score = 26.9 bits (58), Expect = 8.9
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = -1

Query: 44  VIKPRPKTQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLDPKKKITRLKKSVRVYRTSK 103
           ++  RP+ +   K  K+  +  +  + +Y+ Y+ K      P++KIT +K   +   TSK
Sbjct: 406 IVSSRPQKKSFVKPQKILTS--STKKNNYVKYQKKKILTSSPEEKITYVKSGRKKLLTSK 233


>gi|338244957|gb|AFNH01000686.1| Gregarina niphandrodes asmbl.15995,
             whole genome shotgun sequence
          Length = 17998

 Score = 26.9 bits (58), Expect = 8.9
 Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 2/118 (1%)
 Frame = -3

Query: 56    KAHKLQKTHLAITRGSYIVYKPKGKTRLDPKKKITRLKKSVRVYRTSKKAEREVAENDLE 115
             K +K+     + +R   +   P  +    PK K T  K  + V    K    E A+ND +
Sbjct: 11006 KTYKMPSEMFSKSRREELALGPANRR---PKNKPTAAKARITVAVRKKPLTAEEAKNDTD 10836

Query: 116   GVPVVGQDINPNAIPLEQQVQNLSLSKTPAPNNPSQAKTVHA--IHSRRFRSYCDNCT 171
              + VVG+             Q L L +T    + +  KT        R +  YC N T
Sbjct: 10835 ILDVVGR-------------QKLVLHETRKELSGTTDKTTQQGFQFDRVYDEYCSNLT 10701


  Database: G.niphandrodes/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 15,362,869
  Number of sequences in database:  3680
  
Lambda     K      H
   0.319    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,486,559
Number of Sequences: 3680
Number of extensions: 86318
Number of successful extensions: 532
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 114
Number of HSP's gapped (non-prelim): 454
length of query: 313
length of database: 5,120,956
effective HSP length: 95
effective length of query: 218
effective length of database: 4,771,356
effective search space: 1040155608
effective search space used: 1040155608
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)