TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000087_1.0 # Protein # SECIS binding protein 2 (SBP2) # Drosophila melanogaster # Complete (313 letters) Database: F.cylindrus/genome.fa 271 sequences; 80,540,407 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_3 32 1.1 scaffold_6 31 2.5 scaffold_4 30 4.3 scaffold_5 30 5.6 scaffold_29 30 7.3 scaffold_10 30 7.3 scaffold_22 29 9.6 >scaffold_3 Length = 3437899 Score = 32.3 bits (72), Expect = 1.1 Identities = 24/111 (21%), Positives = 49/111 (44%) Frame = -1 Query: 7 RSRNQDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLA 66 R R +D+ T+ RS + ++ R TS ++ K + +++K+ L++++ Sbjct: 1570657 RRRKKDLTITSTTSLKRSKSFSSK-RSNNYSTSTIESPKKSTTTSPKRSKSFSLKRSN-- 1570487 Query: 67 ITRGSYIVYKPKGKTRLDPKKKITRLKKSVRVYRTSKKAEREVAENDLEGV 117 + PK T PK+ + K + +S ++E AEN G+ Sbjct: 1570486 -NSSISTIESPKKSTTTSPKRSKSFSSKRSKAASSSSTCQKESAENVDTGI 1570337 Score = 29.6 bits (65), Expect = 7.3 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 10/61 (16%) Frame = -3 Query: 59 KLQKTHLAITRGSYIVYKPKGKTRLD----------PKKKITRLKKSVRVYRTSKKAERE 108 K Q++ +I GS + Y + ++D KKKI ++KKS+R + SK+ E + Sbjct: 655598 KYQQSRFSIGAGSMLNYFEVQQLQVDLVVVKCNAREGKKKIKKVKKSIRKKKKSKRGETD 655419 Query: 109 V 109 + Sbjct: 655418 I 655416 >scaffold_6 Length = 2967614 Score = 31.2 bits (69), Expect = 2.5 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = -2 Query: 74 VYKPKGKTRLDP-KKKITRLKKSVRVYRTSKKAEREVAEND 113 +Y+ KG+ R+ P KKK T LKK V R K E E+D Sbjct: 2446453 IYQKKGRQRVAPRKKKFTALKKKVLQERLDKWRELHPEESD 2446331 >scaffold_4 Length = 3206981 Score = 30.4 bits (67), Expect = 4.3 Identities = 14/56 (25%), Positives = 28/56 (50%) Frame = -1 Query: 9 RNQDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTH 64 RN+ I+I + K+K+Q + + Q ++ IKP+ K+ + H L + + Sbjct: 249881 RNERPPKAIIRIIRNTHKFKSQAKPNQNQAKKINTKIKPKQKSNQHEIHHHLHRCY 249714 >scaffold_5 Length = 3184085 Score = 30.0 bits (66), Expect = 5.6 Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 1/76 (1%) Frame = +3 Query: 82 RLDPKKKITRLKKSVRVYRTSKKAEREVAENDLEGVP-VVGQDINPNAIPLEQQVQNLSL 140 RLDPKK LK+S R R ++AE + ++ + ++ ++ + N P+ + + +SL Sbjct: 332727 RLDPKKFFVELKESDRKLRRIERAEEARKGSLIQQLSRLICRNDSSNRRPMNKAMIEMSL 332906 Query: 141 SKTPAPNNPSQAKTVH 156 +T N + + T+H Sbjct: 332907 EET---NQSATSATLH 332945 Score = 29.6 bits (65), Expect = 7.3 Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 3/153 (1%) Frame = +1 Query: 6 RRSRNQDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHL 65 + +R++ + + P+S K K++ +++ PK+ + KL K + Sbjct: 514012 KSTRSKSTKKNDVDSKPKSMKSKSKSATKDED----------EPKSLKSKSKSKLTKDDI 514161 Query: 66 AITRGSYIVYKPKGKTRLDPKKKITRLKKSVRVY--RTSKKAEREVAENDLEGVPVVGQD 123 S V K+ KK + KK+ + S KA + + GVP G Sbjct: 514162 EPRSKSKSVKSKDEKSENGLSKKSKKSKKNSEAPSGQPSMKASKTPSSGP-SGVPSEGPS 514338 Query: 124 INPNAIPLEQQVQNLSLSKTPAPN-NPSQAKTV 155 NP+ P + S S + +P+ +PS A ++ Sbjct: 514339 ANPSTSPSVSPSASPSASPSASPSTSPSGAPSL 514437 >scaffold_29 Length = 747900 Score = 29.6 bits (65), Expect = 7.3 Identities = 27/90 (30%), Positives = 42/90 (46%) Frame = +1 Query: 10 NQDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLAITR 69 NQ I I SSK K + R R ++ SLL F + R + + + ++ I R Sbjct: 362917 NQIKAKDTILIISLSSKTKRRKRGRIRERSLLPFNLSYR*GVCVRERERESKREIKRIDR 363096 Query: 70 GSYIVYKPKGKTRLDPKKKITRLKKSVRVY 99 Y Y+ + K + K+K +L K V+VY Sbjct: 363097 AFYFHYQKRRKRKS*SKQK--KL*KWVKVY 363180 >scaffold_10 Length = 1906272 Score = 29.6 bits (65), Expect = 7.3 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%) Frame = +3 Query: 85 PKKKITRLKKSVRVYRTSKKAEREVAENDLEGVPVVGQDINP-----NAIPLEQQVQNLS 139 P K I + + +R Y S+K V ++ P++GQD+ P +I + V ++S Sbjct: 902337 PYKVILAITEDLRTYLKSEKGRSLVQFSNGSDRPIIGQDLKPMHDTAESILKDVIVSDIS 902516 Query: 140 LSKTP 144 L TP Sbjct: 902517 LLYTP 902531 >scaffold_22 Length = 950298 Score = 29.3 bits (64), Expect = 9.6 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = -3 Query: 127 NAIPLEQQVQNLSLSKTPAPNNPSQAKTVHAIHSRRFR 164 N L+ Q Q S+TP + PS + ++H+I S R Sbjct: 862669 NGFQLQLQQQQKQTSRTPTRSKPSSSSSLHSISSSSIR 862556 Database: F.cylindrus/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 80,540,407 Number of sequences in database: 271 Lambda K H 0.319 0.132 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,480,527 Number of Sequences: 271 Number of extensions: 342687 Number of successful extensions: 1972 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 22 Number of HSP's that attempted gapping in prelim test: 1647 Number of HSP's gapped (non-prelim): 830 length of query: 313 length of database: 26,846,802 effective HSP length: 106 effective length of query: 207 effective length of database: 26,818,076 effective search space: 5551341732 effective search space used: 5551341732 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 64 (29.3 bits)