TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000087_1.0 # Protein # SECIS binding protein 2 (SBP2) # Drosophila melanogaster # Complete (313 letters) Database: D.fasciculatum/genome.fa 25 sequences; 31,019,208 total letters Searching.........................done Score E Sequences producing significant alignments: (bits) Value gi|328873752|gb|GL883009.1| Dictyostelium fasciculatum unplaced ... 31 1.3 gi|328866594|gb|GL883026.1| Dictyostelium fasciculatum unplaced ... 30 2.2 gi|328864870|gb|GL883029.1| Dictyostelium fasciculatum unplaced ... 30 2.9 gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced ... 29 5.0 gi|328871053|gb|GL883014.1| Dictyostelium fasciculatum unplaced ... 28 8.5 gi|328874319|gb|GL883008.1| Dictyostelium fasciculatum unplaced ... 28 8.5 >gi|328873752|gb|GL883009.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-G-o-33e01.r1-3, whole genome shotgun sequence Length = 1429294 Score = 30.8 bits (68), Expect = 1.3 Identities = 20/58 (34%), Positives = 26/58 (44%) Frame = +1 Query: 10 NQDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLAI 67 NQDV + IKI P +++ Q K + L P K TK KL TH+ I Sbjct: 290038 NQDVLEYLIKICPLQNRFLYQAMKEAIKNGYL-----PTVKMLHSTKGIKLDSTHMEI 290196 >gi|328866594|gb|GL883026.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_EU5ZYIE02H8LDV-5, whole genome shotgun sequence Length = 1919465 Score = 30.0 bits (66), Expect = 2.2 Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 2/95 (2%) Frame = -2 Query: 203 AHPRLVLGVREALARLRINKVKLLFLATDCEICPGESGLDATIEGLKFQCQQQQV--PYC 260 A P+ LG ++ + + N ++LA C + +E K+ C +++ + Sbjct: 1665829 AVPKRFLGNQQDI*IIYCNGSTQVWLAGGCPFNALDRKWIGWLERYKYFCDIRRLVSKFA 1665650 Query: 261 FPLLRRELSYALQKRAQICCVAILDFDGANATYAD 295 P++ + Y + + CC +++FDG NA D Sbjct: 1665649 LPMMHPVIWYLI---GRCCCCGVVEFDGTNAAPFD 1665554 >gi|328864870|gb|GL883029.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_EUAJFUG02HR96I-5, whole genome shotgun sequence Length = 3408800 Score = 29.6 bits (65), Expect = 2.9 Identities = 14/40 (35%), Positives = 26/40 (65%) Frame = -2 Query: 76 KPKGKTRLDPKKKITRLKKSVRVYRTSKKAEREVAENDLE 115 KPK K++ +PK K+ +L+K+ ++ KK +E +E + E Sbjct: 3274732 KPKSKSKANPKAKVPQLRKT----QSKKKQVKEESEEEEE 3274625 Score = 28.5 bits (62), Expect = 6.5 Identities = 21/64 (32%), Positives = 31/64 (48%) Frame = +2 Query: 46 KPRPKTQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLDPKKKITRLKKSVRVYRTSKKA 105 K R Q+QTK + KTH I RG +YK ++ + K K ++ Y T KK+ Sbjct: 2419838 KRRV*NQKQTKENNTDKTH--IDRGDIYLYKIYSYSKFNYFKSARETNK*LKPY-TLKKS 2420008 Query: 106 EREV 109 +V Sbjct: 2420009 HTQV 2420020 >gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-F-a-25c12.r2-5, whole genome shotgun sequence Length = 4166812 Score = 28.9 bits (63), Expect = 5.0 Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 7/152 (4%) Frame = +2 Query: 16 TAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLAITRGSYIVY 75 T T + K+Q K +QQ + K +PK Q+Q +A K Q + + + Sbjct: 3332498 TPATTTTTKDQPKDQATKNQQQHA----PTKDQPKEQQQAQATKDQPKDQSKDQTTKN-Q 3332662 Query: 76 KPKGKTRLDPKKKITRLKKSVRVYRTSKKAEREVAENDLEGVPVVGQD-------INPNA 128 + + T+ PK + T+ + + K + + P Q ++PN Sbjct: 3332663 QQQTPTKDQPKDQTTKNQPQTPPPPSQPKEQPKPTPTTQPQTPQTPQPKEQAKPTLSPNN 3332842 Query: 129 IPLEQQVQNLSLSKTPAPNNPSQAKTVHAIHS 160 L QQ++ LS+S+ N P+++ A++S Sbjct: 3332843 PSLSQQIEKLSISEN--NNQPTKSPNNQAVNS 3332932 Score = 28.1 bits (61), Expect = 8.5 Identities = 18/88 (20%), Positives = 44/88 (50%) Frame = +2 Query: 20 ITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLAITRGSYIVYKPKG 79 ++ R + + + RKR ++ S + RP+ +R+ K ++++T TR + + Sbjct: 504740 VSSRVKRKRTKRRKRRKRRSKRTRPRRKRPRARRKRK--RIKRTKRTRTRRKRRMARVTR 504913 Query: 80 KTRLDPKKKITRLKKSVRVYRTSKKAER 107 +TR K K T+ ++ + ++ +K + Sbjct: 504914 RTRRTRKTKRTKRTRTSQSHKRPRKKRK 504997 Score = 28.1 bits (61), Expect = 8.5 Identities = 21/90 (23%), Positives = 36/90 (40%) Frame = +2 Query: 71 SYIVYKPKGKTRLDPKKKITRLKKSVRVYRTSKKAEREVAENDLEGVPVVGQDINPNAIP 130 +++VY+P + RL P + R S RV K + VP V ++P Sbjct: 3136145 TWVVYQPTTRVRLSPVNQAKRPTPSSRVSTQPVKLPACLCT-----VPTV-------SVP 3136288 Query: 131 LEQQVQNLSLSKTPAPNNPSQAKTVHAIHS 160 + + + P P+ +T H +HS Sbjct: 3136289 TRCSILSSLVVPAPTPSPTHSPRTPHTVHS 3136378 >gi|328871053|gb|GL883014.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-F-a-11f03.f1-5, whole genome shotgun sequence Length = 911335 Score = 28.1 bits (61), Expect = 8.5 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%) Frame = -3 Query: 93 KKSVRVYRTSKKAEREVAENDLEGVPVVGQDINPNAIPLEQQVQNLSLSKTPAPNNPSQ- 151 KK YR +K+ ERE ENDL V+GQ ++ + +S+T +NP Sbjct: 649412 KKQEVKYRRNKEKEREEEENDL---LVLGQQY--------KERDRVKMSETTTKDNPPPL 649266 Query: 152 AKTVHAIHSRRFRSY 166 AK V ++ R Y Sbjct: 649265 AKAVCKLYYRYIYRY 649221 >gi|328874319|gb|GL883008.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-G-o-80e12.f1-5, whole genome shotgun sequence Length = 2750715 Score = 28.1 bits (61), Expect = 8.5 Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Frame = +3 Query: 11 QDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQR-QTKAHKLQKTHLAITR 69 ++ ++ +++ P SK + K+ ++ + V + +PK R TK + + Sbjct: 2158515 EEPEEEVVEVKPTKSKSSKRSSKKVEEEPEEEVVEQVKPKRGRPSTKKVVVVEEPEEEEE 2158694 Query: 70 GSYIVYKPKGKTRLDPKKKITRLKKSVRVYRTSKKAEREVAENDLE 115 KP K++ KK+ KKS R+ K+++ E E + E Sbjct: 2158695 QEEEEIKPT-KSKRSSSKKVVEEKKSTAKKRSKKESDEEEEEQEEE 2158829 Database: D.fasciculatum/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 31,019,208 Number of sequences in database: 25 Lambda K H 0.319 0.132 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,100,656 Number of Sequences: 25 Number of extensions: 115613 Number of successful extensions: 695 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 608 Number of HSP's gapped (non-prelim): 215 length of query: 313 length of database: 10,339,736 effective HSP length: 100 effective length of query: 213 effective length of database: 10,337,236 effective search space: 2201831268 effective search space used: 2201831268 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 60 (27.7 bits)