TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000087_1.0 # Protein # SECIS binding protein 2 (SBP2) # Drosophila melanogaster # Complete (313 letters) Database: D.discoideum_AX4/genome.fa 6 sequences; 33,943,072 total letters Searching......done Score E Sequences producing significant alignments: (bits) Value gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromoso... 69 5e-12 gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromoso... 33 0.22 gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromoso... 31 1.1 gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromos... 29 5.4 gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromoso... 28 7.1 gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromoso... 28 7.1 >gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole genome shotgun sequence Length = 6357299 Score = 68.9 bits (167), Expect = 5e-12 Identities = 69/302 (22%), Positives = 124/302 (41%), Gaps = 26/302 (8%) Frame = +3 Query: 32 RKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRL------DP 85 RK+ DF+I + T T + T T + + K K + + Sbjct: 1934814 RKQFGSIKFEDFIIVEQQPTTTATTTTGVNTTSTTTTNTTSSIPTEKLKKKKNFLIKDEK 1934993 Query: 86 KKKITRLKKSVRVYRTSK----------KAEREV-AENDLEGVPV-------VGQDINPN 127 K TRLK+ ++++ + K K E ++ EN E + +++ N Sbjct: 1934994 PPKPTRLKRDIQLFTSIKENYTKEKQLQKEENKINIENQSEKTNISIENHENTDENLENN 1935173 Query: 128 AIPLEQQVQNLSLSKTPAPNNPSQAKTVHAIHSRRFRSYCDNCTRPR-LKELSTQLLRDL 186 LEQQ Q + Q + + + F+ Y + + +L+ L Sbjct: 1935174 VKSLEQQQQQQQQQQPQV-----QQQVQQQVQQQNFQEYINQILPNNDINNTCKELIGIL 1935338 Query: 187 DRFQKRAFAKNEIKARAHPRLVLGVREALARLRINKVKLLFLATDCEICPGESG-LDATI 245 +FQ++++ N K + R + G+RE L + NKV + + E E+G L+ + Sbjct: 1935339 RKFQEKSYLNNPDKPKK--RYICGLRETLKFVESNKVSCVIITPTIE----ENGALNKIV 1935500 Query: 246 EGLKFQCQQQQVPYCFPLLRRELSYALQKRAQICCVAILDFDGANATYADLLNEIEDARA 305 E + C+ + + Y F L R L + K +I + ILD+DGAN Y L + + +R Sbjct: 1935501 EDIVRMCKSRSILYTFALSSRSLGKLIGKTIKITVLGILDYDGANEIYQKLFTQTKQSRD 1935680 Query: 306 EY 307 E+ Sbjct: 1935681 EF 1935686 Score = 29.3 bits (64), Expect = 4.2 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = -3 Query: 110 AENDLEGVPVVGQDINPNAIPLEQQVQNLSLSKTPAPNNP 149 +E ++ G+P I L+QQ Q L L +P+P +P Sbjct: 3306864 SERNINGLPSTNSSIVSRQQQLQQQQQKLKLKSSPSPISP 3306745 Score = 29.3 bits (64), Expect = 4.2 Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 2/60 (3%) Frame = +3 Query: 67 ITRGSYIVYKPKGKTRLD--PKKKITRLKKSVRVYRTSKKAEREVAENDLEGVPVVGQDI 124 I RG+Y++ KPKGK +D P +K+ + S +++ S + + +G ++G+D+ Sbjct: 6330630 IPRGTYLLKKPKGKVVIDLIPLQKLINGRHSFQIHGDSIENPGTAS----QGCIILGKDV 6330797 Score = 28.9 bits (63), Expect = 5.4 Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 2/84 (2%) Frame = +3 Query: 5 IRRSRNQDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQT--KAHKLQK 62 ++ NQ V + +KI+P + ++ + Q SL+ + + + QT + QK Sbjct: 1442943 VKERENQFVVVSLLKISPLYN*SLSRKVMLKFQASLMSHSQPQKVQREPQTLENSSNYQK 1443122 Query: 63 THLAITRGSYIVYKPKGKTRLDPK 86 T +++ S + Y+P K +L+ K Sbjct: 1443123 TKMSVLSSSVVNYQPPTKEKLNQK 1443194 Score = 28.1 bits (61), Expect = 9.3 Identities = 15/58 (25%), Positives = 27/58 (46%) Frame = +1 Query: 93 KKSVRVYRTSKKAEREVAENDLEGVPVVGQDINPNAIPLEQQVQNLSLSKTPAPNNPS 150 KKS ++K+ R N + +P+ + L+ +LSL +P P++PS Sbjct: 36736 KKSAPAPPQTRKSPRVSRSNSSLSSSPLSPSSSPSLLSLQSSPSSLSLPSSPTPSSPS 36909 Score = 28.1 bits (61), Expect = 9.3 Identities = 25/140 (17%), Positives = 65/140 (46%) Frame = -3 Query: 3 EKIRRSRNQDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQK 62 +K R+S D + +I+ + K KN+ +K+++ K + K+ +++ ++Q Sbjct: 4453680 KKKRKSIENDDEIINEEISESNYKKKNKDKKKKKN--------KNKRKSNDESEDQEIQS 4453525 Query: 63 THLAITRGSYIVYKPKGKTRLDPKKKITRLKKSVRVYRTSKKAEREVAENDLEGVPVVGQ 122 +VY+ + + KKK K+ ++S ++++E+ + E + Sbjct: 4453524 DQ-------EVVYEVISEEEIKKKKKKKNKNKNKNKRKSSDESDQEIQSDQKEQEEEYYE 4453366 Query: 123 DINPNAIPLEQQVQNLSLSK 142 +I+ I +++ +N + +K Sbjct: 4453365 EISEEEIKKKKKKKNKNKNK 4453306 >gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromosome 5, whole genome shotgun sequence Length = 5125352 Score = 33.5 bits (75), Expect = 0.22 Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 5/80 (6%) Frame = +2 Query: 70 GSYIVYKPKGKTRLDPKKKITRLKKSVRVY-----RTSKKAEREVAENDLEGVPVVGQDI 124 G+ + P+GK L P + K ++Y ++SKK +++ + L+ +P+ Q Sbjct: 3801101 GNSVNCTPRGKILLSPTMSPQKSLKKKKIYENSPIKSSKKQQQQQQHHQLQPIPIQLQTT 3801280 Query: 125 NPNAIPLEQQVQNLSLSKTP 144 PN +Q+ ++L + TP Sbjct: 3801281 TPN--KRQQKHEDLDTTNTP 3801334 Score = 30.0 bits (66), Expect = 2.4 Identities = 20/80 (25%), Positives = 35/80 (43%) Frame = -2 Query: 33 KREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLDPKKKITRL 92 K+ + L +VIK + +++ K K +K H YI K K +KK + Sbjct: 1162879 KKSKTRCLFSYVIKNKTNKKKKKKKKKKKKNHNLYINLFYIFKL*KKKKIYKIQKKKKKK 1162700 Query: 93 KKSVRVYRTSKKAEREVAEN 112 KK + + KK ++ + N Sbjct: 1162699 KKKNKKRKKKKKTNQDQSNN 1162640 Score = 28.5 bits (62), Expect = 7.1 Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 10/142 (7%) Frame = +1 Query: 3 EKIRRSRNQDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQK 62 EK + + +D Q K K + RKRE++ K R + +R K +L+K Sbjct: 88129 EKEKHIKTKDEQKDREKKEKAREKELEKERKREKER----IKEKERQEKERLKKEKELEK 88296 Query: 63 THLAITRGSYIVYKPKGKTRLDPKKKITR----LKKSVRVYRT------SKKAEREVAEN 112 + + K K K + K K+ ++K + + T SKK+ +V ++ Sbjct: 88297 NKKKEKK----LLKEKEKEIKEKKVKLKNQENIIEKDLTINNTTTKTTKSKKSSSKVKKS 88464 Query: 113 DLEGVPVVGQDINPNAIPLEQQ 134 + EGV + +I + E++ Sbjct: 88465 EQEGVKLENVEIEDEEVEEEEE 88530 Score = 28.5 bits (62), Expect = 7.1 Identities = 19/72 (26%), Positives = 33/72 (45%) Frame = -1 Query: 32 RKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLDPKKKITR 91 +K+++ + +K K + +TK K +K + + K K KT+ KKK Sbjct: 1331093 KKKKEMKMKMKMKMKKEMKMKMKTKMKKKKKMKMKMETKEKKKTKEKKKTK--EKKKTKE 1330920 Query: 92 LKKSVRVYRTSK 103 +K + YRT K Sbjct: 1330919 KRKQKKKYRTKK 1330884 >gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromosome 1, whole genome shotgun sequence Length = 4923596 Score = 31.2 bits (69), Expect = 1.1 Identities = 18/75 (24%), Positives = 33/75 (44%) Frame = +1 Query: 20 ITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLAITRGSYIVYKPKG 79 I + K KN++ K L + + KT + K H K + + ++ +YK K Sbjct: 4614538 INKKKKKKKNKYHKNIHYLFLFLIFLNKKKKTHKTHKTHIQHKNKITQKKRNFFLYKIKI 4614717 Query: 80 KTRLDPKKKITRLKK 94 K + KK +++K Sbjct: 4614718 KKKKKKKK*KKKMQK 4614762 Score = 28.1 bits (61), Expect = 9.3 Identities = 16/51 (31%), Positives = 28/51 (54%) Frame = -3 Query: 16 TAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLA 66 ++ K +P S Y NQH+++ QQ +IK P + + ++ QK +LA Sbjct: 1046298 SSTKNSPDSFYYNNQHQQQHQQQKQSPHIIK--PTLPQLSPSNSQQKLNLA 1046152 >gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromosome 2, whole genome shotgun sequence Length = 8484197 Score = 28.9 bits (63), Expect = 5.4 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +3 Query: 70 GSYIVYKPKGKTRLDPKKKITRLKKSVRVYRTSKKAEREVAEN 112 GS+++ K K K + KKKI + KK ++ KK + ++ +N Sbjct: 3141006 GSFLILKKKKKKKKKKKKKIKK-KKKLKKIEIKKKKKNKIKKN 3141131 Score = 28.9 bits (63), Expect = 5.4 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = -2 Query: 70 GSYIVYKPKGKTRLDPKKKITRLKKSVRVYRTSKKAEREVAEN 112 GS+++ K K K + KKKI + KK ++ KK + ++ +N Sbjct: 2890780 GSFLILKKKKKKKKKKKKKIKK-KKKLKKIEIKKKKKNKIKKN 2890655 Score = 28.1 bits (61), Expect = 9.3 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 4/83 (4%) Frame = -3 Query: 74 VYKPKGKTRLDPKKKITRLKK----SVRVYRTSKKAEREVAENDLEGVPVVGQDINPNAI 129 VYK K K + KKK + KK S+ +Y + +E D P I Sbjct: 7201554 VYKKKKKKKKKKKKKKKKKKKKSR*SMNIYHSLPSTAGNTLLTAIEYKATKKLDNKPKII 7201375 Query: 130 PLEQQVQNLSLSKTPAPNNPSQA 152 P +++ + +L KT N A Sbjct: 7201374 PNHEKLTSPALPKTNPRNTTKHA 7201306 >gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromosome 6, whole genome shotgun sequence Length = 3602379 Score = 28.5 bits (62), Expect = 7.1 Identities = 19/62 (30%), Positives = 30/62 (48%) Frame = -1 Query: 32 RKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLDPKKKITR 91 +K++ L F+IK +++TK +KTHL K K KT+ KKK+ Sbjct: 225570 KKKKNSLFLFLFIIKN*TNPKKKTKKKPKKKTHLK---------KTKKKTKKTKKKKLAI 225418 Query: 92 LK 93 L+ Sbjct: 225417 LE 225412 >gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromosome 4, whole genome shotgun sequence Length = 5450249 Score = 28.5 bits (62), Expect = 7.1 Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 13/123 (10%) Frame = +2 Query: 3 EKIRRSRNQDVQDTAIKITPRSSKYKNQHRKREQQTSLLD--FVIKPRPKTQRQTKAHKL 60 +KI++ +N+ +Q SSKYK ++K +L F IK K + K KL Sbjct: 3046418 KKIKKIKNKPIQ*NLFFPIHFSSKYKRNYKK*MLNN*ILKIKFYIKKIKKKINKFKKQKL 3046597 Query: 61 QKTHLAITRGSYIVYKPKG-----------KTRLDPKKKITRLKKSVRVYRTSKKAEREV 109 Q + S+ V+ K KKKI +LKK KK +++ Sbjct: 3046598 QINSFFLYFKSFCVFTSVLFI*TKSILK*IKLNHCKKKKILKLKKRKYFKGEKKKKIKKI 3046777 Query: 110 AEN 112 +N Sbjct: 3046778 KKN 3046786 Score = 28.1 bits (61), Expect = 9.3 Identities = 23/82 (28%), Positives = 36/82 (43%) Frame = -2 Query: 14 QDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLAITRGSYI 73 Q +I I KYK + RKR+++ K + K +++ K +K + H Sbjct: 1735765 QHNSIGIIENVLKYKRKKRKRKKKKK------KKKKKRKKKKKKNKYKYKH--------- 1735631 Query: 74 VYKPKGKTRLDPKKKITRLKKS 95 K K L KK IT+ KK+ Sbjct: 1735630 --KTS*KNNLKKKKIITKKKKN 1735571 Score = 28.1 bits (61), Expect = 9.3 Identities = 19/51 (37%), Positives = 30/51 (58%) Frame = +2 Query: 76 KPKGKTRLDPKKKITRLKKSVRVYRTSKKAEREVAENDLEGVPVVGQDINP 126 K K K + +PKKKI R KK + +R KK +++ + +GV +V +NP Sbjct: 4378640 KKKKKKKFNPKKKIKR-KKKKKPFRCGKKKKKK-KKKG*KGVRIV---VNP 4378777 Database: D.discoideum_AX4/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 33,943,072 Number of sequences in database: 6 Lambda K H 0.319 0.132 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,508,029 Number of Sequences: 6 Number of extensions: 115593 Number of successful extensions: 1211 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 745 Number of HSP's gapped (non-prelim): 1098 length of query: 313 length of database: 11,314,357 effective HSP length: 100 effective length of query: 213 effective length of database: 11,313,757 effective search space: 2409830241 effective search space used: 2409830241 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 61 (28.1 bits)