TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000087_1.0 # Protein # SECIS binding protein 2 (SBP2) # Drosophila melanogaster # Complete (313 letters) Database: C.fasciculata/genome.fa 1089 sequences; 37,048,325 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value Cf_Contig1014 | | 1 to 116088 36 0.037 Cf_Contig892 | | 1 to 169734 36 0.048 Cf_Contig784 | | 1 to 103312 33 0.31 Cf_Contig1047 | | 1 to 300975 32 0.90 Cf_Contig899 | | 1 to 170923 31 1.5 Cf_Contig1051 | | 1 to 359244 30 2.6 Cf_Contig961 | | 1 to 58535 30 2.6 Cf_Contig811 | | 1 to 82957 30 2.6 Cf_Contig785 | | 1 to 197696 30 2.6 Cf_Contig1049 | | 1 to 302556 29 4.5 Cf_Contig1011 | | 1 to 110249 29 4.5 Cf_Contig45 | | 1 to 19236 29 4.5 Cf_Contig1038 | | 1 to 213895 29 5.9 Cf_Contig356 | | 1 to 5635 29 5.9 Cf_Contig992 | | 1 to 103020 28 7.6 Cf_Contig903 | | 1 to 108483 28 7.6 Cf_Contig875 | | 1 to 102556 28 7.6 Cf_Contig1055 | | 1 to 461976 28 10.0 Cf_Contig948 | | 1 to 24884 28 10.0 Cf_Contig488 | | 1 to 1593 28 10.0 >Cf_Contig1014 | | 1 to 116088 Length = 116088 Score = 36.2 bits (82), Expect = 0.037 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 3/70 (4%) Frame = -1 Query: 139 SLSKTPAPNNPSQAKTVHAIHSRRFRSYCDNCTRPRLKELSTQLLRDLDRFQKRA---FA 195 S S +P+P+ P+ A +HA+H+ + D+ T P + L +Q +RD + Q A Sbjct: 41589 SASASPSPDAPTGAIPLHALHADDYARAADSQTSPMTRRLFSQSVRDDEAVQTSENVNAA 41410 Query: 196 KNEIKARAHP 205 NE A A P Sbjct: 41409 LNEKHAAAGP 41380 >Cf_Contig892 | | 1 to 169734 Length = 169734 Score = 35.8 bits (81), Expect = 0.048 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 3/70 (4%) Frame = +2 Query: 139 SLSKTPAPNNPSQAKTVHAIHSRRFRSYCDNCTRPRLKELSTQLLRDLDRFQKRA---FA 195 S S +P+P+ P+ A +HA H+ + D+ T P + L +Q +RD + Q A Sbjct: 135563 SASASPSPDAPTGAIPLHAFHADDYARVADSQTSPMTRRLFSQSVRDDEAVQTSENVNAA 135742 Query: 196 KNEIKARAHP 205 NE A A P Sbjct: 135743 LNEKHAAAGP 135772 >Cf_Contig784 | | 1 to 103312 Length = 103312 Score = 33.1 bits (74), Expect = 0.31 Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 10/146 (6%) Frame = -2 Query: 47 PRPKTQRQTKAHKLQKTHLAITRG---SYI---VYKPKGKTRLDPKKKITRLKKSVRVYR 100 P+P+ + Q K +K L ++ +YI +Y K K RL +++ + +K V R Sbjct: 95550 PQPRAKEQIIGKK-EKEGLEVSSSCT*AYI*VYMYVRKQKERLLEREREGKREKKCEVER 95374 Query: 101 TS---KKAEREVAENDLEG-VPVVGQDINPNAIPLEQQVQNLSLSKTPAPNNPSQAKTVH 156 T+ +K +R E +L G V V D+ Q+ +N L + S T+H Sbjct: 95373 TTMN*RKGKRRR*EKELLGEVGDVAGDVTLRLSKKLQREENARLKEAI-----SAKPTIH 95209 Query: 157 AIHSRRFRSYCDNCTRPRLKELSTQL 182 A + R + C R + K LS+ L Sbjct: 95208 AATTTRTKKKDKECAREKKKRLSSSL 95131 >Cf_Contig1047 | | 1 to 300975 Length = 300975 Score = 31.6 bits (70), Expect = 0.90 Identities = 11/24 (45%), Positives = 19/24 (79%) Frame = +2 Query: 142 KTPAPNNPSQAKTVHAIHSRRFRS 165 +TP P++P QA++VH+ H+ RF + Sbjct: 184088 RTPPPSSPRQAESVHSFHTWRFHT 184159 >Cf_Contig899 | | 1 to 170923 Length = 170923 Score = 30.8 bits (68), Expect = 1.5 Identities = 33/110 (30%), Positives = 44/110 (40%), Gaps = 7/110 (6%) Frame = -3 Query: 106 EREVAENDLEGVPVVGQDINPNAIPLEQQVQNLSLSKTPAPNNPSQAKTVHAIHS-RRFR 164 ER AE+DL +P ++P + +Q SKTP+P + V IHS +R Sbjct: 5729 ERRAAEDDLLR--------SPASVP--EPLQRCQGSKTPSPAKDNTEAIVREIHSAMAYR 5580 Query: 165 S------YCDNCTRPRLKELSTQLLRDLDRFQKRAFAKNEIKARAHPRLV 208 S CT P L Q LR L R + A PRL+ Sbjct: 5579 SGGSMWWVSPCCTSPHHSSLIQQALRSLLRIGLSSGASMPFARGLLPRLL 5430 >Cf_Contig1051 | | 1 to 359244 Length = 359244 Score = 30.0 bits (66), Expect = 2.6 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 3/78 (3%) Frame = +2 Query: 3 EKIRRSRNQDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKP---RPKTQRQTKAHK 59 EK ++ + + I R K +HR+ E L I+ R R + HK Sbjct: 290525 EKDHNRDGEEKKRETVGIKKRKIH*KKKHRREETLVLTLQRCIRAYFSRYNNNRDRRQHK 290704 Query: 60 LQKTHLAITRGSYIVYKP 77 + K+H GS +++P Sbjct: 290705 IDKSHTCCKAGSVDLHRP 290758 >Cf_Contig961 | | 1 to 58535 Length = 58535 Score = 30.0 bits (66), Expect = 2.6 Identities = 36/149 (24%), Positives = 55/149 (36%), Gaps = 18/149 (12%) Frame = -3 Query: 139 SLSKTPAPNNPSQAKTVHAIHSRRFRSYCDNCTRPRLKELSTQLLRDLDRFQKRAFAKNE 198 SLS + + +T H + R F D+ T PRL+ + L F +FA Sbjct: 29580 SLSFVQTYTSNQEVETKHLLSFRFFLQTSDHYTHPRLR*PH----QSLTHFLSLSFA--- 29422 Query: 199 IKARAHPRLVLGVREALARL----------RINKVKLLFLATDCEICPGESGLDAT---- 244 PR ++G A+ R + + K+ F C L A Sbjct: 29421 ----VFPRCIVGHSAAVCRRIYSSTDTPIHKTERKKIFFFGCCCHCLNSPKYLFAVASTR 29254 Query: 245 ----IEGLKFQCQQQQVPYCFPLLRRELS 269 + +F Q+Q+ P+CF LL LS Sbjct: 29253 VFVLLTFFRFFTQRQKSPHCFILLASLLS 29167 >Cf_Contig811 | | 1 to 82957 Length = 82957 Score = 30.0 bits (66), Expect = 2.6 Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Frame = -1 Query: 195 AKNEIKARAHP---RLVLGVREALARLRINKVKLLFLATDCEICPGESG 240 AK +KAR H RL+L R+ LA LRIN V L + C G SG Sbjct: 54022 AKGALKARRHDTELRLLLDERQ-LAALRINAVALRRVGIAVPWCDGSSG 53879 >Cf_Contig785 | | 1 to 197696 Length = 197696 Score = 30.0 bits (66), Expect = 2.6 Identities = 34/134 (25%), Positives = 56/134 (41%) Frame = -1 Query: 75 YKPKGKTRLDPKKKITRLKKSVRVYRTSKKAEREVAENDLEGVPVVGQDINPNAIPLEQQ 134 YK K + DPKK + L+K + R + A++E+A++ D P +PL Sbjct: 172109 YKAKKDPKADPKK-VAALEKRMND-RAHELAKKELAKDR------AFLDPEPEGVPLA-- 171960 Query: 135 VQNLSLSKTPAPNNPSQAKTVHAIHSRRFRSYCDNCTRPRLKELSTQLLRDLDRFQKRAF 194 +L LS+ P N ++ R+ P++KEL ++ K+ Sbjct: 171959 --DLPLSEDPEFNEMAK--------QRQALKNAGKARDPKVKELEEKMNDRAHDLAKKEL 171810 Query: 195 AKNEIKARAHPRLV 208 AKN A P+ V Sbjct: 171809 AKNRAYLDAEPQNV 171768 >Cf_Contig1049 | | 1 to 302556 Length = 302556 Score = 29.3 bits (64), Expect = 4.5 Identities = 19/65 (29%), Positives = 28/65 (43%) Frame = +3 Query: 7 RSRNQDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLA 66 RS DV + SS Y R +Q + V++PRP Q +TK +++ Sbjct: 25083 RSERSDVSRVSR*ALCSSS*YSGMTRPMRRQQITIPVVVRPRPIWQLKTKESVSRRSRCF 25262 Query: 67 ITRGS 71 RGS Sbjct: 25263 AMRGS 25277 >Cf_Contig1011 | | 1 to 110249 Length = 110249 Score = 29.3 bits (64), Expect = 4.5 Identities = 19/65 (29%), Positives = 28/65 (43%) Frame = +2 Query: 7 RSRNQDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLA 66 RS DV + SS Y R +Q + V++PRP Q +TK +++ Sbjct: 75140 RSERSDVSRVSR*ALCSSS*YSGMTRPMRRQQITIPVVVRPRPIWQLKTKESVSRRSRCF 75319 Query: 67 ITRGS 71 RGS Sbjct: 75320 AMRGS 75334 >Cf_Contig45 | | 1 to 19236 Length = 19236 Score = 29.3 bits (64), Expect = 4.5 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%) Frame = +3 Query: 28 KNQHRKREQQTS-----LLDFVIKPRPKTQRQTKAHKLQKTHLAITRGSYIVYKPK 78 K R+R++QTS LL F ++PR T T A +H RG V KP+ Sbjct: 3975 KRCDRRRKRQTSRTV*VLLCFSLQPRITTVPATPARACDSSHTRQLRGKEKVTKPR 4142 >Cf_Contig1038 | | 1 to 213895 Length = 213895 Score = 28.9 bits (63), Expect = 5.9 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 6/47 (12%) Frame = -3 Query: 239 SGLDATIEGLKFQ------CQQQQVPYCFPLLRRELSYALQKRAQIC 279 +G + G+K Q C P+ P L ELS AL+K ++IC Sbjct: 113801 AGTSVSFRGIKVQKGDVWRCDTLLSPFSAPRLLSELSLALKKESKIC 113661 >Cf_Contig356 | | 1 to 5635 Length = 5635 Score = 28.9 bits (63), Expect = 5.9 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 6/47 (12%) Frame = -2 Query: 239 SGLDATIEGLKFQ------CQQQQVPYCFPLLRRELSYALQKRAQIC 279 +G + G+K Q C P+ P L ELS AL+K ++IC Sbjct: 4161 AGTSVSFRGIKVQKGDVWRCDTLLSPFSAPRLLSELSLALKKESKIC 4021 >Cf_Contig992 | | 1 to 103020 Length = 103020 Score = 28.5 bits (62), Expect = 7.6 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 5/70 (7%) Frame = +3 Query: 75 YKPKGKTRLDPKKKITRLKKSVRVYRTSKKAEREVAENDLE-----GVPVVGQDINPNAI 129 YK + + KKK+ LKK V + R + D+E G+ G+D+ A Sbjct: 41148 YKQLERQLEESKKKVEELKKDVLYRAADAENARRIGREDVEKAKLYGITSFGKDMLEVAD 41327 Query: 130 PLEQQVQNLS 139 LE+ +++ + Sbjct: 41328 TLEKAIESFA 41357 >Cf_Contig903 | | 1 to 108483 Length = 108483 Score = 28.5 bits (62), Expect = 7.6 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = +3 Query: 48 RPKTQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLDPKKKITRLKKS 95 RP T Q K +KT +A R + + KPK K + + + KKS Sbjct: 34977 RPATSPQRSESKKRKTSVARGRSTSVKEKPKAKPKAKDEATAGKRKKS 35120 >Cf_Contig875 | | 1 to 102556 Length = 102556 Score = 28.5 bits (62), Expect = 7.6 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 3/87 (3%) Frame = -3 Query: 28 KNQHRKREQQT---SLLDFVIKPRPKTQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLD 84 K + +KREQQ ++ F P+P + Q+K + + H+ G+Y K R Sbjct: 77633 KEKCKKREQQLDKPNMKKFTFPPKPDCETQSKQTRRRSRHVTSRLGTYTKNKATTLRR*H 77454 Query: 85 PKKKITRLKKSVRVYRTSKKAEREVAE 111 + + + +V+ R KK E + Sbjct: 77453 AWEVDSPVFSNVQQLRLGKKKTPETID 77373 >Cf_Contig1055 | | 1 to 461976 Length = 461976 Score = 28.1 bits (61), Expect = 10.0 Identities = 17/45 (37%), Positives = 26/45 (57%) Frame = -2 Query: 24 SSKYKNQHRKREQQTSLLDFVIKPRPKTQRQTKAHKLQKTHLAIT 68 +++ + Q KRE TS +++ I P KT+R K HK+ K H T Sbjct: 288413 TAQRRQQRTKRECITSQIEWSISP--KTKRSNKRHKV-KQHTQFT 288288 >Cf_Contig948 | | 1 to 24884 Length = 24884 Score = 28.1 bits (61), Expect = 10.0 Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 11/172 (6%) Frame = -2 Query: 125 NPNAIPLEQQVQNLSLSKTPAPNNPSQAKTVHAIHSRRFRSYCDNCTRPRLKELSTQLL- 183 +P ++PL + ++++S S TP PN + + T L ++ +QL Sbjct: 18874 SPFSVPLPKDMEDVSTSMTPRPNTTTTPRP---------------DTAKELLDVKSQLAA 18740 Query: 184 --RDLDRFQKRAFAKNEIKARAHPRLVLGVREALARLRINKVKLLFLATD--CEICPGES 239 +L+R K K + A + G+R + L + K + E+ + Sbjct: 18739 RDAELNRV-KEELTKAQGTASSSATAESGLRAEVKTLNASLAKQAETVSQLRTEVTAAQR 18563 Query: 240 GLDAT---IEGLKFQC---QQQQVPYCFPLLRRELSYALQKRAQICCVAILD 285 DA +EGL+ C QQQQ L E + +++ Q V L+ Sbjct: 18562 ARDAALQEVEGLRKSCAEQQQQQAAALRNLESLERQHTAERQQQDAAVQSLE 18407 >Cf_Contig488 | | 1 to 1593 Length = 1593 Score = 28.1 bits (61), Expect = 10.0 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 2/49 (4%) Frame = +1 Query: 11 QDVQDTAIKITPRSSKY--KNQHRKREQQTSLLDFVIKPRPKTQRQTKA 57 ++++ + + TP+S +N +++ Q + V+KP P TQR +KA Sbjct: 1159 KNIRSSFLYKTPKSQNTTERNTYKRHLQAKTTPRIVVKPPPPTQRNSKA 1305 Database: C.fasciculata/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 37,048,325 Number of sequences in database: 1089 Lambda K H 0.319 0.132 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,859,564 Number of Sequences: 1089 Number of extensions: 219763 Number of successful extensions: 1668 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 150 Number of HSP's successfully gapped in prelim test: 84 Number of HSP's that attempted gapping in prelim test: 1296 Number of HSP's gapped (non-prelim): 780 length of query: 313 length of database: 12,349,441 effective HSP length: 101 effective length of query: 212 effective length of database: 12,239,452 effective search space: 2594763824 effective search space used: 2594763824 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 61 (28.1 bits)