TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000087_1.0 # Protein # SECIS binding protein 2 (SBP2) #
Drosophila melanogaster # Complete
         (313 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330849694|gb|ADNL01000909.1| Astrammina rara contig01058, who...    27   0.65 
gi|330849340|gb|ADNL01001263.1| Astrammina rara contig01488, who...    26   0.85 
gi|330848344|gb|ADNL01002259.1| Astrammina rara contig02695, who...    25   1.9  
gi|330847384|gb|ADNL01003219.1| Astrammina rara contig02818, who...    23   5.5  
gi|330847707|gb|ADNL01002896.1| Astrammina rara contig01575, who...    23   5.5  
gi|330850390|gb|ADNL01000213.1| Astrammina rara contig00223, who...    23   5.5  

>gi|330849694|gb|ADNL01000909.1| Astrammina rara contig01058, whole
           genome shotgun sequence
          Length = 960

 Score = 26.6 bits (57), Expect = 0.65
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -2

Query: 141 SKTPAPNNPSQAKTVHAIHSRRFRSYCDNCTRPRLKELSTQLLRDLDRFQKR 192
           +KTPAP   S   T+H  H    +S       PR + + T      DRF+ R
Sbjct: 959 TKTPAPR*MSDPTTIHHKHET*TKSTVIRRPSPRHQSVVTSSTLLCDRFRGR 804


>gi|330849340|gb|ADNL01001263.1| Astrammina rara contig01488, whole
           genome shotgun sequence
          Length = 228

 Score = 26.2 bits (56), Expect = 0.85
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 74  VYKPKGKTRLDPKKKITRLKKSVRVYRTSKKAEREVAENDL 114
           + KPK + R + K  I RL+++    + SKK   +  +N L
Sbjct: 148 IKKPKAEKRKERKPNIHRLREAAAENKFSKKLRSKKTKNKL 26


>gi|330848344|gb|ADNL01002259.1| Astrammina rara contig02695, whole
           genome shotgun sequence
          Length = 1454

 Score = 25.0 bits (53), Expect = 1.9
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +2

Query: 155 VHAIHSRRFRSYCDNCTRPRLKELSTQLLR 184
           +H      F   C NC  PR++   T L R
Sbjct: 740 MHTSRRSMFHGVCPNCCNPRVQHPKTTLSR 829


>gi|330847384|gb|ADNL01003219.1| Astrammina rara contig02818, whole
            genome shotgun sequence
          Length = 2919

 Score = 23.5 bits (49), Expect = 5.5
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 116  GVPVVGQDINPNAIP 130
            G+PVVGQ   P AIP
Sbjct: 1689 GLPVVGQTSLPQAIP 1733


>gi|330847707|gb|ADNL01002896.1| Astrammina rara contig01575, whole
           genome shotgun sequence
          Length = 340

 Score = 23.5 bits (49), Expect = 5.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 261 FPLLRRELSYALQKRAQICCVAILDFDGANATYADL 296
           FPLL R LS  +    ++C +A++         ADL
Sbjct: 241 FPLLLRRLSLCMIITTEMCLIALIVKKQKRMVKADL 134


>gi|330850390|gb|ADNL01000213.1| Astrammina rara contig00223, whole
           genome shotgun sequence
          Length = 2541

 Score = 23.5 bits (49), Expect = 5.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 5   IRRSRNQDVQDTAIKITPRSSKYKNQH 31
           +  S +Q +   ++KITPR+  + N H
Sbjct: 264 VATSHSQYLSTMSLKITPRTQHFDNIH 184


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.319    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 461,724
Number of Sequences: 3231
Number of extensions: 5708
Number of successful extensions: 26
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of query: 313
length of database: 483,365
effective HSP length: 74
effective length of query: 239
effective length of database: 244,271
effective search space: 58380769
effective search space used: 58380769
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)