TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000087_1.0 # Protein # SECIS binding protein 2 (SBP2) #
Drosophila melanogaster # Complete
         (313 letters)

Database: A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325186804|emb|FR824165.1| Albugo laibachii Nc14, genomic cont...    40   0.003
gi|325190746|emb|FR824329.1| Albugo laibachii Nc14, genomic cont...    32   0.46 
gi|325193895|emb|FR824859.1| Albugo laibachii Nc14, genomic cont...    32   0.60 
gi|325185555|emb|FR824130.1| Albugo laibachii Nc14, genomic cont...    29   5.1  
gi|325191611|emb|FR824366.1| Albugo laibachii Nc14, genomic cont...    28   6.6  
gi|325184670|emb|FR824110.1| Albugo laibachii Nc14, genomic cont...    28   8.6  

>gi|325186804|emb|FR824165.1| Albugo laibachii Nc14, genomic contig
             CONTIG_120_NC14_v4_72505_240
          Length = 72505

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
 Frame = +2

Query: 22    PRSSKYKNQHRKREQQT--SLLDFVIKPRPKTQRQTKAHKL--QKTHLAITRGSYIVYKP 77
             PR  K K+  R +++Q   SL   +IKP PKTQ ++ A  L  +K    IT         
Sbjct: 26327 PRQKKRKSSFRAKKRQAVKSLSTKLIKPAPKTQSESHAEPLSDEKGTTPIT--------- 26479

Query: 78    KGKTRLDPKKKITRLKKSVRVYRTSKKAEREVAENDLEGVPVVGQDINP 126
             K + R       +R+         S KA+ E++  D   VP  G   NP
Sbjct: 26480 KDEPRASASSYSSRIDSQASPPADSPKAQVEISTGDAAQVPAFGTRRNP 26626


>gi|325190746|emb|FR824329.1| Albugo laibachii Nc14, genomic contig
            CONTIG_284_NC14_v4_33195_240
          Length = 33195

 Score = 32.3 bits (72), Expect = 0.46
 Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
 Frame = +2

Query: 161  RRFRSYCDNCTRPRLKELSTQLLRDL-----DRFQKRAFAKNEIKARAHP-RLVLGVREA 214
            ++F +YC +   PRL  ++TQ L+D      D  ++R  ++N I         ++ + EA
Sbjct: 2312 KKFITYCRSRCSPRLSSVATQALQDFYVTVRDDIRQRRASENTIPVTVRQLEALVRISEA 2491

Query: 215  LARLRINK 222
            LA++++ +
Sbjct: 2492 LAKMKLQR 2515


>gi|325193895|emb|FR824859.1| Albugo laibachii Nc14, genomic contig
            CONTIG_1064_NC14_v4_3734_133
          Length = 3734

 Score = 32.0 bits (71), Expect = 0.60
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = -2

Query: 117  VPVVGQDINPNAIPLEQQVQNLSLSKTPAPNNPSQAKTVHAIH 159
            VPVVG  ++PN I     VQ LS+   P P+  S+ K V ++H
Sbjct: 2140 VPVVGAPVSPNFIRKHLAVQPLSI---PLPST*SELKAVLSVH 2021


>gi|325185555|emb|FR824130.1| Albugo laibachii Nc14, genomic contig
            CONTIG_85_NC14_v4_88159_251
          Length = 88159

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -3

Query: 47   PRPKTQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLDPKKKITRLKKSVRVYRTSKKAE 106
            PRPK++   K+    K+H      S     P+ K+R  PK + +   +S    R+S K++
Sbjct: 5810 PRPKSRSSPKSRSSPKSHSRPKSRSSPKSHPRPKSRSSPKSRSSPKSQSRPKSRSSPKSQ 5631


>gi|325191611|emb|FR824366.1| Albugo laibachii Nc14, genomic contig
            CONTIG_321_NC14_v4_28515_265
          Length = 28515

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -3

Query: 235  CPGESGLDATIEG---LKFQCQQQQVPYCFPLLRRELSYALQKRAQI 278
            C   +G+DATI+    LK Q ++Q  P    LLR+ +S   Q  + I
Sbjct: 9928 CDSSNGMDATIQQFRTLKLQSERQCEPMSSHLLRKSISCTRQSPSGI 9788


>gi|325184670|emb|FR824110.1| Albugo laibachii Nc14, genomic contig
             CONTIG_65_NC14_v4_99306_240
          Length = 99306

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 151   QAKTVHAIHSRRFRSYCDNCTRPRLKELSTQLLRDLD 187
             +++TVH +  RR  S C   T+P   E ST+    +D
Sbjct: 70107 RSRTVHCVRYRRILSLCCIRTKPLGSECSTRYFASID 70217


  Database: A.laibachii_Nc14/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.319    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,658,298
Number of Sequences: 3816
Number of extensions: 150623
Number of successful extensions: 891
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 414
Number of HSP's gapped (non-prelim): 646
length of query: 313
length of database: 10,913,379
effective HSP length: 100
effective length of query: 213
effective length of database: 10,531,779
effective search space: 2243268927
effective search space used: 2243268927
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)