TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|70879148|gb|EAN92345.1| hypothetical protein, conserved [Trypanosoma cruzi] (386 letters) Database: T.congolense/genome.fa 11 sequences; 22,287,946 total letters Searching...........done Score E Sequences producing significant alignments: (bits) Value TcIL3000_10_v2.embl 218 3e-57 T.congo.pschr.11 32 0.43 T.congo.pschr.8 29 4.8 T.congo.pschr.6 29 4.8 T.congo.pschr2 28 6.3 >TcIL3000_10_v2.embl Length = 3612457 Score = 218 bits (556), Expect = 3e-57 Identities = 138/365 (37%), Positives = 197/365 (53%), Gaps = 4/365 (1%) Frame = +3 Query: 1 MRICLVLLSGLPGAGKTTLSLAIQRLSEQVTTEGERSNSRHGGVVEAVLELDTFI-SSYE 59 M + LVLL+GLPGAGK+TL+ A+QR Q + GE S +EAV+ELD FI ++ Sbjct: 2047023 MEVWLVLLTGLPGAGKSTLARALQR---QRSVAGEPSRLS----IEAVVELDDFIIAAGA 2047181 Query: 60 ERDG---TQRNGSNFSPEAWRRACDEVREATFQRIRQCLLNPEKKRGRNMSSTTTRFVFL 116 DG T + F+P+ WR A E R A + +R+CL E GR R VF Sbjct: 2047182 VEDGGSDTLVKSTLFTPQRWREAYVESRSAIHRELRRCLTVDEGSNGR------LRLVFF 2047343 Query: 117 VDTLPYRSMRASYWKLCRDLGKEQFQHKLERDGVMNKCDGRVPFDAVFVNMVEIRLNTPI 176 VD LPYRSMR SYWKLC ++ +E + + + P V M+E+RLNTP+ Sbjct: 2047344 VDPLPYRSMRESYWKLCNEVSRECGELRCVQ----------APERLNRVLMLEVRLNTPV 2047493 Query: 177 EICLERNERRTETPQYVPPHVIKNMGGSFDVGVDTSAKFSADDNCWVVSPRQASTPWPVI 236 ++CL RNE R+ TPQYVPP+VIK + SFD+G + + + W + P + STPWPV+ Sbjct: 2047494 DVCLRRNEFRSGTPQYVPPYVIKGISDSFDIGDLSKSVVLGGGSVWAMLPHRKSTPWPVL 2047673 Query: 237 WLEEVKTNCCLPPAALAQKLLERLHSPEVMGELEKQSASFFEAEVKRRERERCDHDQPQE 296 L + +C L+ L+E + E+M E+ +Q E RE+++ D Sbjct: 2047674 LLADEVQHCNDSSETLSDHLIECIFRQELMNEMSQQRNLVSNVE---REQQKRDGLARSP 2047844 Query: 297 GDAAKASRSDWLHQVDLRLRAVVQQYMKEFKKSGKLLPGTGALVSKCREEQYAQVKAMLA 356 + K S LHQ+DL +RAVV+ ++ + G L G SKCR E YA+++ L Sbjct: 2047845 TNERKCDSSGLLHQIDLHMRAVVRHFILHQSRYGTLPSNIGKKASKCRAEYYAKIRTSLG 2048024 Query: 357 CRQDD 361 +D Sbjct: 2048025 GGLED 2048039 Score = 28.5 bits (62), Expect = 6.3 Identities = 26/118 (22%), Positives = 51/118 (43%) Frame = +3 Query: 249 PAALAQKLLERLHSPEVMGELEKQSASFFEAEVKRRERERCDHDQPQEGDAAKASRSDWL 308 P +++ +R+H E + E + Q S E E+ RRE++ +E DA +A R Sbjct: 144663 PRRRLKEIQQRVHEIEEVVEEKLQEKSQLEGELHRREKDLA--AAAKECDAVRAKRDAAE 144836 Query: 309 HQVDLRLRAVVQQYMKEFKKSGKLLPGTGALVSKCREEQYAQVKAMLACRQDDEAFDA 366 V+ Q KK ++ + L + +++ Q + + + +EA +A Sbjct: 144837 RDVERIKSGADDQVRARKKKEAQIKAASDELKNAGLQQEDVQREIAIHNQNLEEAREA 145010 >T.congo.pschr.11 Length = 4797796 Score = 32.3 bits (72), Expect = 0.43 Identities = 19/47 (40%), Positives = 26/47 (55%) Frame = -2 Query: 6 VLLSGLPGAGKTTLSLAIQRLSEQVTTEGERSNSRHGGVVEAVLELD 52 +LL G PG GKTT L + R + ++ E S + EAVLEL+ Sbjct: 2721708 LLLCGPPGTGKTTSMLCLAR---SLLSDSEGGGSSSNALKEAVLELN 2721577 Score = 30.0 bits (66), Expect = 2.2 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 2/73 (2%) Frame = -3 Query: 6 VLLSGLPGAGKTTLSLAIQRLSEQVT--TEGERSNSRHGGVVEAVLELDTFISSYEERDG 63 VLL G PG GKT ++ AI RLS + T T ++ V E+ L ++ DG Sbjct: 478397 VLLHGPPGTGKTLIARAIARLSGKKTMVTVVNAAHIVSKYVGESEKNLQDIFDAHHVEDG 478218 Query: 64 TQRNGSNFSPEAW 76 G + W Sbjct: 478217 DSWEGEQPLGDFW 478179 >T.congo.pschr.8 Length = 2451971 Score = 28.9 bits (63), Expect = 4.8 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 9/67 (13%) Frame = -3 Query: 19 LSLAIQRLSEQVTTEGERSNSRHGG---VVEAVLELDTFISSYEERDGTQRNG------S 69 + LA+ + + SNSR+ G + EA+ E T +R T ++G + Sbjct: 573381 IDLAMAEIPTPPIVLQQSSNSRNPGW*VMTEAMAEAPTSRKRLADRSSTVKSGRRTSNSA 573202 Query: 70 NFSPEAW 76 +FSPEAW Sbjct: 573201 SFSPEAW 573181 >T.congo.pschr.6 Length = 1233507 Score = 28.9 bits (63), Expect = 4.8 Identities = 17/38 (44%), Positives = 23/38 (60%) Frame = -2 Query: 6 VLLSGLPGAGKTTLSLAIQRLSEQVTTEGERSNSRHGG 43 VL+ GL AGKTTL A+ ++V EG+ S+ H G Sbjct: 913175 VLIVGLDNAGKTTLLNALG--EDEVPVEGKVSHPAHEG 913068 >T.congo.pschr2 Length = 799489 Score = 28.5 bits (62), Expect = 6.3 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 5/92 (5%) Frame = -1 Query: 2 RICLVLLSGLPGAGKTTL---SLAIQRLSEQVTTEGERSNSRHGGVVEAVLELDTFISSY 58 R C LL GL G+GKTTL +A +R++ + + E R G V+A D SS Sbjct: 398146 RSCAALLVGLAGSGKTTLFAQLVAGKRVAVRTSMEANR------GDVKASCSTDNADSSQ 397985 Query: 59 EERDGTQRN--GSNFSPEAWRRACDEVREATF 88 T + G E+ A +EV++ F Sbjct: 397984 VSTGVTLIDFPGHRRLRESLLEAVEEVKKVIF 397889 Database: T.congolense/genome.fa Posted date: Nov 21, 2011 7:47 PM Number of letters in database: 22,287,946 Number of sequences in database: 11 Lambda K H 0.319 0.133 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,779,053 Number of Sequences: 11 Number of extensions: 172851 Number of successful extensions: 958 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 800 Number of HSP's gapped (non-prelim): 475 length of query: 386 length of database: 7,429,315 effective HSP length: 100 effective length of query: 286 effective length of database: 7,428,215 effective search space: 2124469490 effective search space used: 2124469490 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 60 (27.7 bits)