TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|70879148|gb|EAN92345.1| hypothetical protein, conserved [Trypanosoma cruzi] (386 letters) Database: P.capsici/genome.fa 917 sequences; 64,023,748 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PHYCAscaffold_17 41 1e-06 PHYCAscaffold_18 32 1.6 PHYCAscaffold_255 32 2.1 PHYCAscaffold_37 31 2.7 PHYCAscaffold_63 30 4.6 PHYCAscaffold_87 30 6.0 PHYCAscaffold_62 30 6.0 PHYCAscaffold_11 30 6.0 PHYCAscaffold_6 30 6.0 >PHYCAscaffold_17 Length = 985188 Score = 40.8 bits (94), Expect(2) = 1e-06 Identities = 33/128 (25%), Positives = 54/128 (42%) Frame = +1 Query: 5 LVLLSGLPGAGKTTLSLAIQRLSEQVTTEGERSNSRHGGVVEAVLELDTFISSYEERDGT 64 LVL+ GLPGAGKTTL + + V T S+ H E +F YE+ Sbjct: 94639 LVLVCGLPGAGKTTL------VKQLVATACSISSRLH--------ERISFDDLYEQHVTA 94776 Query: 65 QRNGSNFSPEAWRRACDEVREATFQRIRQCLLNPEKKRGRNMSSTTTRFVFLVDTLPYRS 124 + F PE W+ ++ + R++ E+ + + + + D YRS Sbjct: 94777 EGKPGEFDPEKWKMCQQDMLKRVSNRLK------EQNDPVHRNECNQLVLLVDDNFQYRS 94938 Query: 125 MRASYWKL 132 +R ++ L Sbjct: 94939 LRKRFFHL 94962 Score = 30.8 bits (68), Expect(2) = 1e-06 Identities = 18/57 (31%), Positives = 28/57 (49%) Frame = +2 Query: 172 LNTPIEICLERNERRTETPQYVPPHVIKNMGGSFDVGVDTSAKFSADDNCWVVSPRQ 228 ++ P++IC ERN R + Q VP V + M +F+ + N W V+ RQ Sbjct: 95060 VDVPLDICRERNAGRNKREQ-VPSEVFERMAAAFEPP-------NGRQNSWEVNTRQ 95206 >PHYCAscaffold_18 Length = 984210 Score = 32.0 bits (71), Expect = 1.6 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 6/103 (5%) Frame = -3 Query: 248 PPAALAQKLLERLHSPEVMGELEKQSASFFEAEVKRRERERCDHDQPQEGDAAKASRSDW 307 P ++L+ S E ++ AS F++ V+ R+ E + ++ +A + SRS W Sbjct: 152878 PTTLTGARVLDITPSKRKSREALEEMASSFKSYVQDRKEEAQRETEERKEEALRVSRSSW 152699 Query: 308 LHQ----VDL--RLRAVVQQYMKEFKKSGKLLPGTGALVSKCR 344 L + D+ R+R +++ K+ L G L+ K R Sbjct: 152698 LEERSKIYDMLERVRGQIRELNKDLAAPDTLNTGDADLLHKDR 152570 >PHYCAscaffold_255 Length = 7610 Score = 31.6 bits (70), Expect = 2.1 Identities = 18/58 (31%), Positives = 26/58 (44%) Frame = +3 Query: 77 RRACDEVREATFQRIRQCLLNPEKKRGRNMSSTTTRFVFLVDTLPYRSMRASYWKLCR 134 RR C R + R+C +R R+ + T+R+ YR +YWKLCR Sbjct: 4758 RRVC-RTRRTRHRTCRRCCRGRRTRRTRHRTCGTSRWRI*TFHSAYRMPWRTYWKLCR 4928 >PHYCAscaffold_37 Length = 577888 Score = 31.2 bits (69), Expect = 2.7 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 3/81 (3%) Frame = +3 Query: 38 NSRHGGVVEAVLELDTFISSYEERDGTQRNGSNFSPEAWRRACDEVREATFQRIRQCLLN 97 N G + +L LD F + RD +G N + E+ +R C E+R LL Sbjct: 126843 NKPEGLIQRYLLLLDLFRLGFLRRDLIPSSGQNLN*ESGKRGCVEIR----------LLR 126992 Query: 98 PE---KKRGRNMSSTTTRFVF 115 P +K+ RN+S T VF Sbjct: 126993 PTQAVRKQTRNISCKGTTKVF 127055 >PHYCAscaffold_63 Length = 355987 Score = 30.4 bits (67), Expect = 4.6 Identities = 23/59 (38%), Positives = 26/59 (44%) Frame = -2 Query: 204 SFDVGVDTSAKFSADDNCWVVSPRQASTPWPVIWLEEVKTNCCLPPAALAQKLLERLHS 262 S D GV S KF V P ST P +W+ V CC + LA L E LHS Sbjct: 90771 SLDFGVSASFKF--------VRPVVRSTSLPDLWMFYVGRQCC---SLLAGLLDENLHS 90628 >PHYCAscaffold_87 Length = 182599 Score = 30.0 bits (66), Expect = 6.0 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = -3 Query: 102 RGRNMSSTTTRFVFLVDTLPYRSMRASYW 130 RGR ++ T VFLVD+ P S+ YW Sbjct: 92909 RGRQVAGTQDAHVFLVDSRPGHSLLQPYW 92823 >PHYCAscaffold_62 Length = 322952 Score = 30.0 bits (66), Expect = 6.0 Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 14/77 (18%) Frame = +2 Query: 7 LLSGLPGAGKTTLSLAIQR------LSE--QVTTEGERSNSRHGGVVEAV------LELD 52 L+ G PG+GKTT A+ R LSE Q + R+NS + + V L LD Sbjct: 190772 LVYGAPGSGKTTCITALHRALVALELSERSQENEQMGRTNSLPPALTQIVILNPHLLTLD 190951 Query: 53 TFISSYEERDGTQRNGS 69 F SS G + +GS Sbjct: 190952 QFYSSVASACGAEVSGS 191002 >PHYCAscaffold_11 Length = 1076090 Score = 30.0 bits (66), Expect = 6.0 Identities = 15/52 (28%), Positives = 27/52 (51%) Frame = -2 Query: 254 QKLLERLHSPEVMGELEKQSASFFEAEVKRRERERCDHDQPQEGDAAKASRS 305 Q+ +++ + E E+E+ A+ E + RRE RCD + +G SR+ Sbjct: 586618 QRAMDKQKALETGDEVERALATLEEEQRLRREHSRCDANWRSDGSKVAISRT 586463 >PHYCAscaffold_6 Length = 1423605 Score = 30.0 bits (66), Expect = 6.0 Identities = 19/59 (32%), Positives = 26/59 (44%) Frame = -1 Query: 65 QRNGSNFSPEAWRRACDEVREATFQRIRQCLLNPEKKRGRNMSSTTTRFVFLVDTLPYR 123 Q NGS SP WR C R+ LL P+ ++ R + S+ T + T P R Sbjct: 1391508 QPNGS*KSPIDWRHLC-------VNRVHTILLRPQFRKNRAIRSSQTEHRARLSTRPLR 1391353 Database: P.capsici/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 64,023,748 Number of sequences in database: 917 Lambda K H 0.319 0.133 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,991,270 Number of Sequences: 917 Number of extensions: 490601 Number of successful extensions: 3196 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 96 Number of HSP's successfully gapped in prelim test: 72 Number of HSP's that attempted gapping in prelim test: 2158 Number of HSP's gapped (non-prelim): 2155 length of query: 386 length of database: 21,341,249 effective HSP length: 107 effective length of query: 279 effective length of database: 21,243,130 effective search space: 5926833270 effective search space used: 5926833270 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 64 (29.3 bits)