TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|70879148|gb|EAN92345.1| hypothetical protein, conserved [Trypanosoma cruzi] (386 letters) Database: L.tarentolae/genome.fa 7267 sequences; 31,598,840 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Lt_contig331 | | 1 to 7609 104 1e-22 Lt_contig5262 | | 1 to 11693 35 0.11 Lt_contig4824 | | 1 to 14951 35 0.11 Lt_contig1543 | | 1 to 31178 31 1.7 Lt_contig5921 | | 1 to 12216 30 2.8 Lt_contig5139 | | 1 to 3610 30 3.7 Lt_contig6279 | | 1 to 14002 30 3.7 Lt_contig5174 | | 1 to 9844 29 4.8 Lt_contig6665 | | 1 to 2430 29 6.3 Lt_contig6413 | | 1 to 6981 29 6.3 Lt_contig41 | | 1 to 13593 29 6.3 Lt_contig5769 | | 1 to 766 28 8.2 Lt_contig1544 | | 1 to 14813 28 8.2 Lt_contig302 | | 1 to 3114 28 8.2 Lt_contig174 | | 1 to 13268 28 8.2 >Lt_contig331 | | 1 to 7609 Length = 7609 Score = 104 bits (259), Expect = 1e-22 Identities = 97/367 (26%), Positives = 145/367 (39%), Gaps = 41/367 (11%) Frame = -1 Query: 5 LVLLSGLPGAGKTTLSLAIQR---LSEQVTTEGERSNSRHGGVVEAVLELDTFISSYEER 61 L L++G+PGAGK+ A QR + + R G V AVL+LD + E Sbjct: 7240 LFLVTGIPGAGKSAFLDAAQRHILQRDNILGNVPLFGGRCSGRVCAVLQLDKVLVDLEAA 7061 Query: 62 D------GTQRNGSNFSPEAWRRACDEVREATFQRIRQCLLNPEKKRGRNMSSTTTRFVF 115 + T FSP WRRA + E T +R C+ + RG + VF Sbjct: 7060 EVHENDPATSAGERKFSPLLWRRATRRLLELTHSALRACM--EDTLRGHATENAVVPMVF 6887 Query: 116 LVDTLPYRSMRASYWKLCRDLGKEQFQHKLERDGVMNKCDGRVPFDAVFVNMVEIRLNTP 175 + D + YRSMR Y+++CR L +E F D F+ + E+R TP Sbjct: 6886 VEDNMHYRSMRERYYRMCRTLEREYFLPSPHSDPT-----AAAQLQQNFIVLFELRFATP 6722 Query: 176 IEICLERNERR----------TETPQYVPPHVIKNMGGSFDVGVDTSAKFSADDNCWVVS 225 + +CL RN +R +VPP VI +M F D C+ + Sbjct: 6721 LAVCLARNAQRNIRHGSGKGQAYASSWVPPPVICSMDALF-------------DQCYATT 6581 Query: 226 PRQASTPWPVIWLEEVKTNCCLPPAALAQKLLERLHSPEVM-GELEKQSASFFEAEVKRR 284 TPW + P L + + + + + +ASFFE ++R Sbjct: 6580 DLVDHTPWAPCHTNGWQWTATTQPWGLLVYATQGVGVNNIRPAAVSETAASFFEVALQRP 6401 Query: 285 E-----------------RERCDHDQPQEGD----AAKASRSDWLHQVDLRLRAVVQQYM 323 E + C+ +Q E AA+A S HQ+DL+LR VV ++ Sbjct: 6400 EAWDTCQQQCQDIARSRLQRLCEGEQANESTSLRRAAEAVESH-THQLDLQLRGVVHAFL 6224 Query: 324 KEFKKSG 330 + K G Sbjct: 6223 CQRKDDG 6203 >Lt_contig5262 | | 1 to 11693 Length = 11693 Score = 34.7 bits (78), Expect = 0.11 Identities = 15/24 (62%), Positives = 21/24 (87%) Frame = -3 Query: 3 ICLVLLSGLPGAGKTTLSLAIQRL 26 + +V+L GLPGAGK+TLS+A+ RL Sbjct: 10044 LTVVVLCGLPGAGKSTLSVALSRL 9973 >Lt_contig4824 | | 1 to 14951 Length = 14951 Score = 34.7 bits (78), Expect = 0.11 Identities = 15/24 (62%), Positives = 21/24 (87%) Frame = -3 Query: 3 ICLVLLSGLPGAGKTTLSLAIQRL 26 + +V+L GLPGAGK+TLS+A+ RL Sbjct: 13302 LTVVVLCGLPGAGKSTLSVALSRL 13231 >Lt_contig1543 | | 1 to 31178 Length = 31178 Score = 30.8 bits (68), Expect = 1.7 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 11/89 (12%) Frame = -3 Query: 239 EEVKTNCCLPPAA--LAQKLLERLHSPEVMGELE-----KQSASFFEAEVKRRERERCDH 291 E+VK +C PP L+ + +H+ + G+ K+ E R E+ RC H Sbjct: 6984 EKVKQHCTAPPTRTLLSSARMRMVHAGDAKGDARQRECWKREGGEVEQHAFRGEQRRCPH 6805 Query: 292 DQPQEGDAAKASR----SDWLHQVDLRLR 316 Q + A+ R + W + D+RLR Sbjct: 6804 QQAYITEDARMRR*EVCARWRAE-DMRLR 6721 >Lt_contig5921 | | 1 to 12216 Length = 12216 Score = 30.0 bits (66), Expect = 2.8 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 5/52 (9%) Frame = +1 Query: 6 VLLSGLPGAGKTTLSLAIQRLSEQVTTEGERSNSRHGGVV-----EAVLELD 52 +LL G PG GKTT L + R TT+ + + GG +AVLEL+ Sbjct: 394 LLLCGPPGTGKTTSMLCLARDLLLQTTDTGSAGATSGGATKDILKDAVLELN 549 >Lt_contig5139 | | 1 to 3610 Length = 3610 Score = 29.6 bits (65), Expect = 3.7 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +3 Query: 31 TTEGERSNSRHGGVVEAVLELDTFISSYEERDGTQRN 67 +TEGE ++ HGG+V F S+ +R+ RN Sbjct: 2292 STEGEEGDTSHGGIVHVQRWTPRFFSTMLDRESPARN 2402 >Lt_contig6279 | | 1 to 14002 Length = 14002 Score = 29.6 bits (65), Expect = 3.7 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%) Frame = -2 Query: 206 DVGVDTSAKFSADDN---CWVVSPRQASTPWPVIWLEE 240 D+ ++ FS D+ CWV +PR S P +W EE Sbjct: 3438 DMWRSSTPSFSPADSTRSCWVAAPRMGSLPASTLWGEE 3325 >Lt_contig5174 | | 1 to 9844 Length = 9844 Score = 29.3 bits (64), Expect = 4.8 Identities = 19/72 (26%), Positives = 35/72 (48%) Frame = +3 Query: 175 PIEICLERNERRTETPQYVPPHVIKNMGGSFDVGVDTSAKFSADDNCWVVSPRQASTPWP 234 P+ R+ E P Y P ++ +GG VG+ + + +D+ +P +A++P P Sbjct: 4416 PVHGARAARSRQAEHP*Y-PYCILCAVGG---VGITSITLAAGEDDVVSNAPAEAASPKP 4583 Query: 235 VIWLEEVKTNCC 246 + LE + CC Sbjct: 4584 LASLEAAMSMCC 4619 >Lt_contig6665 | | 1 to 2430 Length = 2430 Score = 28.9 bits (63), Expect = 6.3 Identities = 18/44 (40%), Positives = 26/44 (59%) Frame = -3 Query: 23 IQRLSEQVTTEGERSNSRHGGVVEAVLELDTFISSYEERDGTQR 66 +QRLS+ EGER++SR ++A +E EE+D TQR Sbjct: 1333 VQRLSDLRAPEGERASSRL-AQMQAEMERRLMRRRIEEQDRTQR 1205 >Lt_contig6413 | | 1 to 6981 Length = 6981 Score = 28.9 bits (63), Expect = 6.3 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = +1 Query: 71 FSPEAWRRACDEVREATFQRIRQCLLNPEKKRGRNMSSTTTRFVFL 116 ++P AWRRA +E Q+ RQC + RG +S+ F FL Sbjct: 5122 YTPHAWRRASIFSKEEQQQQRRQCTTR-ARLRGEPVSAMRFLFSFL 5256 >Lt_contig41 | | 1 to 13593 Length = 13593 Score = 28.9 bits (63), Expect = 6.3 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = +1 Query: 71 FSPEAWRRACDEVREATFQRIRQCLLNPEKKRGRNMSSTTTRFVFL 116 ++P AWRRA +E Q+ RQC + RG +S+ F FL Sbjct: 4852 YTPHAWRRASIFSKEEQQQQRRQCTTR-ARLRGEPVSAMRFLFSFL 4986 >Lt_contig5769 | | 1 to 766 Length = 766 Score = 28.5 bits (62), Expect = 8.2 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 6/104 (5%) Frame = +3 Query: 59 EERDGTQRNGSNFSPEAWRRACDEVREAT---FQRIRQCLLNP---EKKRGRNMSSTTTR 112 E+R R+G+ + W R ++ T +R CL EK+R + + T Sbjct: 363 EKRRSEARHGARVGEKRWGRTGNDTSSVTAPLHRRFCSCLDEAGCMEKERSSVLVAERTS 542 Query: 113 FVFLVDTLPYRSMRASYWKLCRDLGKEQFQHKLERDGVMNKCDG 156 V+ T R R W+ + + HK+ RD M +C G Sbjct: 543 AVYRA-TPQSRGKRRKAWRRGDETTRA---HKIRRDVGMGECQG 662 >Lt_contig1544 | | 1 to 14813 Length = 14813 Score = 28.5 bits (62), Expect = 8.2 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Frame = -2 Query: 34 GERSNSRHGGVVEAVLELDTFISSY--EERDGTQRNGSNFSPEAWRRACDEVR 84 G++S S+H E L + Y + + G+ R +F+ WRRAC VR Sbjct: 9109 GKQS*SKHSTRTERFNTLRLSLMPYTPQSKTGSTRKRGDFTFLMWRRACRNVR 8951 >Lt_contig302 | | 1 to 3114 Length = 3114 Score = 28.5 bits (62), Expect = 8.2 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +2 Query: 61 RDGTQRNGSNFSPEAWRRACDEVREATFQRIRQCLL 96 R GT++ N SPE WR AC F R+ +C + Sbjct: 545 RRGTKKK--NKSPETWRCACATTTMEVFVRLLRCFV 646 >Lt_contig174 | | 1 to 13268 Length = 13268 Score = 28.5 bits (62), Expect = 8.2 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +2 Query: 3 ICLVLLSGLPGAGKTTLSLAIQRLSEQVTTEGERSNSRH 41 +CL++ S P T + L + R + Q+ T GE RH Sbjct: 10055 VCLLMFSLSPTPLTTRIFLLVYRSNPQLNTSGETQRQRH 10171 Database: L.tarentolae/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 31,598,840 Number of sequences in database: 7267 Lambda K H 0.319 0.133 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,560,868 Number of Sequences: 7267 Number of extensions: 305238 Number of successful extensions: 2258 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1225 Number of HSP's successfully gapped in prelim test: 132 Number of HSP's that attempted gapping in prelim test: 900 Number of HSP's gapped (non-prelim): 1592 length of query: 386 length of database: 10,532,946 effective HSP length: 102 effective length of query: 284 effective length of database: 9,791,712 effective search space: 2780846208 effective search space used: 2780846208 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 61 (28.1 bits)