TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|70879148|gb|EAN92345.1| hypothetical protein, conserved [Trypanosoma cruzi] (386 letters) Database: L.donovani_BPK282A1/genome.fa 36 sequences; 32,444,998 total letters Searching....................................done Score E Sequences producing significant alignments: (bits) Value contig_36 98 9e-21 contig_14 34 0.22 contig_17 30 2.4 contig_34 30 3.1 contig_33 30 3.1 contig_10 30 3.1 contig_35 29 6.9 >contig_36 Length = 2713248 Score = 98.2 bits (243), Expect = 9e-21 Identities = 98/362 (27%), Positives = 157/362 (43%), Gaps = 41/362 (11%) Frame = -2 Query: 5 LVLLSGLPGAGKTTLSLAIQR-------LSEQVTTEGERSNSRHGGVVEAVLELDTFISS 57 L L++G+P AGK+T +A QR +S +V G R + R + +VLELD ++ Sbjct: 2169554 LFLVTGIPAAGKSTFLVAAQRHVLQRDSISGEVPIFGGRCHGR----ICSVLELDKVLAD 2169387 Query: 58 YE-----ERDGTQRNGSN-FSPEAWRRACDEVREATFQRIRQCLLNPEKKRGRNMSSTTT 111 + E+D G FSP WR+A + E T +R C+ G + Sbjct: 2169386 LDAATVHEKDTAASAGERKFSPRLWRQATRRLLELTQSALRTCIEGTVN--GDATENAVV 2169213 Query: 112 RFVFLVDTLPYRSMRASYWKLCRDLGKEQFQHKLERDGVMNKCDGRVPFDAVFVNMVEIR 171 +F+ D + YRSMR Y+++CR L +E++ + + R P +F E+R Sbjct: 2169212 PMIFVEDNMHYRSMRERYYQMCRTLEREEYSLQSPHEDPAAAVQSRQPLIVLF----ELR 2169045 Query: 172 LNTPIEICLERNERR-----------TETPQYVPPHVIKNMGGSFDVGVDTS--AKFSAD 218 TP+ +CL RN +R +VPP VI +M FD T+ +A Sbjct: 2169044 FATPLAVCLARNAQRGNPREGSGKEQARASAWVPPPVICSMDALFDHCYATADPVHHAAW 2168865 Query: 219 DNC-WVVSPRQAST-PWPVIWLE----EVKTNCCLPPAALAQKLL----ERLHSPEVMGE 268 C W A+T PW ++ E C PAA+++ L PE Sbjct: 2168864 APCHWNGWQWTATTQPWGLLVHATQGGEADEIC---PAAMSETAACFFDVALQRPEAWDA 2168694 Query: 269 LEKQSASFFEAEVKRRERERCDHDQPQEGDAAKASRS-----DWLHQVDLRLRAVVQQYM 323 +KQ + + ++R D Q +A + R+ HQ+DL+LR VV ++ Sbjct: 2168693 CQKQCQNIARSRLQRL------RDDEQMDEATRLRRTAETVESHTHQLDLQLRGVVHAFL 2168532 Query: 324 KE 325 ++ Sbjct: 2168531 RQ 2168526 Score = 32.3 bits (72), Expect = 0.63 Identities = 13/24 (54%), Positives = 20/24 (83%) Frame = -3 Query: 3 ICLVLLSGLPGAGKTTLSLAIQRL 26 + +V+L GLPGAGK+TL++ + RL Sbjct: 2671069 LTVVVLCGLPGAGKSTLAMVLSRL 2670998 Score = 29.3 bits (64), Expect = 5.3 Identities = 20/62 (32%), Positives = 24/62 (38%) Frame = +1 Query: 211 TSAKFSADDNCWVVSPRQASTPWPVIWLEEVKTNCCLPPAALAQKLLERLHSPEVMGELE 270 TSA DD+CW P +A WP CC AA Q+ R P L Sbjct: 1220629 TSAACYLDDHCWPARPCRAGRRWP---------RCC--DAAAPQRWRHRAVPPTFARGLA 1220775 Query: 271 KQ 272 +Q Sbjct: 1220776 RQ 1220781 Score = 29.3 bits (64), Expect = 5.3 Identities = 25/94 (26%), Positives = 32/94 (34%), Gaps = 11/94 (11%) Frame = +2 Query: 32 TEGERSNSRHGGVVEAVLE--LDTFISSYEERDGTQRNGSNFSPEAWRRACDEVREATFQ 89 +E ER R G V E D+ S ER G E WR C + Sbjct: 1317215 SERERKRQRKGQTTTRVCEKQADSIASLEAERRSEGGGGVVRGGEGWRERCSTK*KQAKH 1317394 Query: 90 RIRQCLLNP---------EKKRGRNMSSTTTRFV 114 R R+C P +KR R ST + + Sbjct: 1317395 RTRRCTQAPSRQDIRTKKNRKRDRERESTLAKLL 1317496 >contig_14 Length = 645099 Score = 33.9 bits (76), Expect = 0.22 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%) Frame = +3 Query: 248 PPAALAQKLLERLHSPEVMGELEKQSASFFEAEVKRRERERC----DHDQPQEGDA 299 PP A + ER+HS E + E +A++FE EV+ R R HDQ + A Sbjct: 384777 PPLATTRHQNERMHSCENLSERCNAAAAYFEREVRARGRSLVIGPNSHDQKRNAQA 384944 >contig_17 Length = 671483 Score = 30.4 bits (67), Expect = 2.4 Identities = 11/15 (73%), Positives = 14/15 (93%) Frame = -1 Query: 220 NCWVVSPRQASTPWP 234 +CW VSPRQAS+P+P Sbjct: 526616 SCWRVSPRQASSPFP 526572 >contig_34 Length = 1750858 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 3/46 (6%) Frame = +2 Query: 222 WVVSPRQASTPWPVIWLEEVKTNCCLP---PAALAQKLLERLHSPE 264 WV P S WP W+ +CC P P+ LA + H PE Sbjct: 1744205 WV--PASLSWWWPGAWISSTSPSCCSPSRLPSLLAVQRRSPPHGPE 1744336 >contig_33 Length = 1453978 Score = 30.0 bits (66), Expect = 3.1 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 5/79 (6%) Frame = -3 Query: 114 VFLVDTLPY----RSMRASYWKLCRDLGKEQ-FQHKLERDGVMNKCDGRVPFDAVFVNMV 168 + L DTLP R S W + R G + QH + D +C GRV V + ++ Sbjct: 437615 ILLQDTLPGAADGRQNGESNWHVHRQPGVVKGSQHSVRGDTSQRRCSGRVAVRVVALRLI 437436 Query: 169 EIRLNTPIEICLERNERRT 187 + L +CL+R + T Sbjct: 437435 RVVLIA--RLCLKRLQETT 437385 >contig_10 Length = 558170 Score = 30.0 bits (66), Expect = 3.1 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = -3 Query: 237 WLEEVKTNCCLPPAALAQKLLERLHSP 263 WLE K +CC PP L LL+ H+P Sbjct: 482550 WLERWKRSCCAPPRPLV--LLQAAHAP 482476 Score = 28.5 bits (62), Expect = 9.0 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%) Frame = +2 Query: 210 DTSAKFSADD---NCWVVSPRQASTPWPVIWLEEVKTNCCLPPAALAQ 254 + S+ SADD N V PRQ S+ P + + C PPA LA+ Sbjct: 390080 EASSSLSADD*VDNSRVDVPRQRSSVTPPLLWR*CRWKSCAPPALLAR 390223 >contig_35 Length = 2113966 Score = 28.9 bits (63), Expect = 6.9 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 5/55 (9%) Frame = -1 Query: 214 KFSADDNCWVVSPRQASTPWPVIWLEEVKTNCCL-----PPAALAQKLLERLHSP 263 + +A D+C + P+ WL T+CC PPAA L R+ P Sbjct: 493228 RLTASDSCSSLRSTSNFES*PLAWL*RTSTSCCASSTSEPPAAAGSALSPRVRLP 493064 Database: L.donovani_BPK282A1/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 32,444,998 Number of sequences in database: 36 Lambda K H 0.319 0.133 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,364,904 Number of Sequences: 36 Number of extensions: 327925 Number of successful extensions: 2517 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 2286 Number of HSP's gapped (non-prelim): 568 length of query: 386 length of database: 10,814,999 effective HSP length: 102 effective length of query: 284 effective length of database: 10,811,327 effective search space: 3070416868 effective search space used: 3070416868 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 62 (28.5 bits)