TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|70879148|gb|EAN92345.1| hypothetical protein, conserved
[Trypanosoma cruzi]
         (386 letters)

Database: G.niphandrodes/genome.fa 
           3680 sequences; 15,362,869 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|338243464|gb|AFNH01001433.1| Gregarina niphandrodes asmbl.225...    32   0.48 
gi|338240509|gb|AFNH01002911.1| Gregarina niphandrodes asmbl.361...    31   0.82 
gi|338242822|gb|AFNH01001754.1| Gregarina niphandrodes asmbl.255...    31   0.82 
gi|338240883|gb|AFNH01002725.1| Gregarina niphandrodes asmbl.344...    30   1.8  
gi|338239188|gb|AFNH01003570.1| Gregarina niphandrodes asmbl.898...    29   2.4  
gi|338241606|gb|AFNH01002362.1| Gregarina niphandrodes asmbl.310...    29   2.4  
gi|338241911|gb|AFNH01002209.1| Gregarina niphandrodes asmbl.296...    29   2.4  
gi|338242123|gb|AFNH01002103.1| Gregarina niphandrodes asmbl.287...    29   2.4  
gi|338242758|gb|AFNH01001786.1| Gregarina niphandrodes asmbl.258...    29   3.1  
gi|338243102|gb|AFNH01001614.1| Gregarina niphandrodes asmbl.242...    29   3.1  
gi|338241506|gb|AFNH01002412.1| Gregarina niphandrodes asmbl.315...    28   5.3  
gi|338244279|gb|AFNH01001025.1| Gregarina niphandrodes asmbl.188...    28   5.3  
gi|338240413|gb|AFNH01002960.1| Gregarina niphandrodes asmbl.366...    28   6.9  
gi|338240921|gb|AFNH01002706.1| Gregarina niphandrodes asmbl.342...    27   9.0  
gi|338241686|gb|AFNH01002322.1| Gregarina niphandrodes asmbl.306...    27   9.0  
gi|338242798|gb|AFNH01001766.1| Gregarina niphandrodes asmbl.256...    27   9.0  

>gi|338243464|gb|AFNH01001433.1| Gregarina niphandrodes asmbl.2255,
            whole genome shotgun sequence
          Length = 6488

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +2

Query: 259  RLHSPEVMGELEKQSASFFEAEVKRRERERCDHDQPQEGDAAKASRS 305
            R  +   +GE E+ +A+ FE+EV R    R ++    E DAA A R+
Sbjct: 1268 RAGAERALGEEERAAAAAFESEVSRSRNVRNENIAAAERDAAAAERA 1408


>gi|338240509|gb|AFNH01002911.1| Gregarina niphandrodes asmbl.3617,
             whole genome shotgun sequence
          Length = 34118

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
 Frame = -1

Query: 172   LNTPIEICLERNERRTETPQYVPPHVIKNMGGSFDVGVDTSAKFSADDNCWVVSPRQAST 231
             L+ P E+  +RN  R   P    PH I+ +G + D+G+       A    +   P +  T
Sbjct: 24194 LSGPSEL-RDRNNHRD--PNRQAPHGIQPVGAAADIGLGAVDNVRATTRVFDPPPEERKT 24024

Query: 232   PWPVIWLEEVKTN------CCLPPAA 251
                  W E VK +      CC  PAA
Sbjct: 24023 KVKYSWQECVKLDYWKQVVCCNGPAA 23946


>gi|338242822|gb|AFNH01001754.1| Gregarina niphandrodes asmbl.2550,
             whole genome shotgun sequence
          Length = 48726

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 23/83 (27%), Positives = 30/83 (36%)
 Frame = +2

Query: 230   STPWPVIWLEEVKTNCCLPPAALAQKLLERLHSPEVMGELEKQSASFFEAEVKRRERERC 289
             + P P+   E VKT    P         E L  P+                   R++E+ 
Sbjct: 39125 AAPIPISLAESVKTWTLKPDDTAPAAFHELLTKPKA---------------TSTRDQEQR 39259

Query: 290   DHDQPQEGDAAKASRSDWLHQVD 312
             D DQPQ G+A      DWL   D
Sbjct: 39260 DQDQPQVGNAWADEDEDWLSDDD 39328


>gi|338240883|gb|AFNH01002725.1| Gregarina niphandrodes asmbl.3445,
            whole genome shotgun sequence
          Length = 32519

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 12/19 (63%), Positives = 18/19 (94%)
 Frame = -1

Query: 6    VLLSGLPGAGKTTLSLAIQ 24
            VL++G+PGAGKTTL+ A++
Sbjct: 2465 VLVTGVPGAGKTTLAEALE 2409


>gi|338239188|gb|AFNH01003570.1| Gregarina niphandrodes asmbl.898,
            whole genome shotgun sequence
          Length = 1368

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = -3

Query: 5    LVLLSGLPGAGKTTLSLAIQR 25
            +VLLSG PG GKT L+L + R
Sbjct: 1177 VVLLSGRPGTGKTALALGMAR 1115


>gi|338241606|gb|AFNH01002362.1| Gregarina niphandrodes asmbl.3106,
            whole genome shotgun sequence
          Length = 17022

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = -1

Query: 278  EAEVKRRERERCDHDQPQEGDAAKASRSDWLHQVDLRLRAVVQQYMKEFKKSG 330
            E+   R  ++RC  +QP+  +     R  W   + L +R     +  E K+SG
Sbjct: 8751 ESTENRECQQRCSDNQPERANGGAFQRPGWFVGLQLIIRGTGGYFFGEEKQSG 8593


>gi|338241911|gb|AFNH01002209.1| Gregarina niphandrodes asmbl.2966,
           whole genome shotgun sequence
          Length = 1641

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = -3

Query: 72  SPEAWRRACDEVREATFQRIRQCLLNPEKKRGRNMSSTTTRFVFLVDTLPYRSMRASYW 130
           SP AW  +C   R  +     +CL  P       +S+T    VF V  LP    R +++
Sbjct: 829 SPPAWSASCPHRRRDSTTNRLECLRGPVG*APTTISATIWNTVFRVPLLPKTPARETFF 653


>gi|338242123|gb|AFNH01002103.1| Gregarina niphandrodes asmbl.2870,
           whole genome shotgun sequence
          Length = 2810

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +1

Query: 72  SPEAWRRACDEVREATFQRIRQCLLNPEKKRGRNMSSTTTRFVFLVDTLPYRSMRASYW 130
           SP AW  +C   R  +     +CL  P       +S+T    VF V  LP    R +++
Sbjct: 157 SPPAWSASCPHRRRDSTTNRLECLRGPVG*APTTISATIWNTVFRVPLLPKTPARETFF 333


>gi|338242758|gb|AFNH01001786.1| Gregarina niphandrodes asmbl.2580,
           whole genome shotgun sequence
          Length = 2413

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 18/56 (32%), Positives = 22/56 (39%)
 Frame = +1

Query: 72  SPEAWRRACDEVREATFQRIRQCLLNPEKKRGRNMSSTTTRFVFLVDTLPYRSMRA 127
           SP AW   C   R  +     +CL  P       +S+T    VF V  LP    RA
Sbjct: 592 SPPAWSAGCPHRRRDSTTNRLECLRGPVG*APTTISATIWNTVFRVPLLPKTPARA 759


>gi|338243102|gb|AFNH01001614.1| Gregarina niphandrodes asmbl.2421,
            whole genome shotgun sequence
          Length = 2480

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = -3

Query: 72   SPEAWRRACDEVREATFQRIRQCLLNPEKKRGRNMSSTTTRFVFLVDTLPYRSMRASYWK 131
            SP AW  +C   R  +     +CL  P       +S+T    VF V   P ++ ++ +  
Sbjct: 1365 SPPAWSASCPHRRRDSTTNRLECLRGPVG*APTTISATIWNTVFRVPPTPAKNSQSGFDS 1186

Query: 132  LCRDL 136
            L RDL
Sbjct: 1185 L-RDL 1174


>gi|338241506|gb|AFNH01002412.1| Gregarina niphandrodes asmbl.3155,
            whole genome shotgun sequence
          Length = 13494

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 22/68 (32%), Positives = 29/68 (42%)
 Frame = +3

Query: 7    LLSGLPGAGKTTLSLAIQRLSEQVTTEGERSNSRHGGVVEAVLELDTFISSYEERDGTQR 66
            LL G PG+GKTTL+ A+           E+ NS+    + A        S Y E  G+  
Sbjct: 8031 LLGGGPGSGKTTLAEAVV----------EQLNSKRKTAITA--------SRYREDGGSTP 8156

Query: 67   NGSNFSPE 74
             G  F  E
Sbjct: 8157 KGRQFGTE 8180


>gi|338244279|gb|AFNH01001025.1| Gregarina niphandrodes asmbl.1888,
            whole genome shotgun sequence
          Length = 1506

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = -2

Query: 72   SPEAWRRACDEVREATFQRIRQCLLNPEKKRGRNMSSTTTRFVFLVDTLPYRSMRA 127
            SP AW  +C   R  +     +CL  P       +S+T    V+ V  LP    RA
Sbjct: 1235 SPPAWSASCPHRRRDSTTNRLECLRGPVG*APTTISATIWNTVYRVPLLPKTPARA 1068


>gi|338240413|gb|AFNH01002960.1| Gregarina niphandrodes asmbl.3662,
            whole genome shotgun sequence
          Length = 11135

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 220  NCWVVSPRQASTPWPVIWLEEVKTNCCLPPAALAQKLLERLH 261
            NCWV S    STPW  + L ++ ++    P   +  L+  +H
Sbjct: 9056 NCWVRSVAAISTPWSDL*LPQIPSDKDPTPGNASSPLVLPIH 9181


>gi|338240921|gb|AFNH01002706.1| Gregarina niphandrodes asmbl.3426,
             whole genome shotgun sequence
          Length = 43374

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
 Frame = +2

Query: 230   STPWPVIWLEEVKTNCCLPPAALAQKLLE---RLHSPEVMGELEKQS--ASFFEAEVKRR 284
             S PW +     +  NCCL   ++A  LL+     H  E   +++ QS     F +  + +
Sbjct: 32993 SGPW*L*ICRRMAKNCCLVTNSIAMLLLK*VWTSHKKETSPDVDLQSVITRCFTSLAQEQ 33172

Query: 285   ERERCDHDQP 294
             ++ R ++++P
Sbjct: 33173 QQTRSEYEEP 33202


>gi|338241686|gb|AFNH01002322.1| Gregarina niphandrodes asmbl.3069,
            whole genome shotgun sequence
          Length = 10483

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 4/102 (3%)
 Frame = +1

Query: 216  SADDNCWVVSPRQASTPWPVIWLEEVKTNCCLPPAALAQKLLERLHSPEVMGELEKQSAS 275
            S+ DN   ++  +A+T   V WL  V+   C P A   +  L+R+ S          S+S
Sbjct: 4660 SSLDNGAPMADARATTS*AVKWLAFVRRRSCAPFAWCLRSRLDRIWS-------RPASSS 4818

Query: 276  FF----EAEVKRRERERCDHDQPQEGDAAKASRSDWLHQVDL 313
            FF       VKR   +     + Q  D  +   + W H  D+
Sbjct: 4819 FFCRWRVGSVKR--LQGLGRRRLQGADVCRGQDAGWCHYPDI 4938


>gi|338242798|gb|AFNH01001766.1| Gregarina niphandrodes asmbl.2562,
           whole genome shotgun sequence
          Length = 11824

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 19/40 (47%), Positives = 22/40 (55%)
 Frame = -1

Query: 249 PAALAQKLLERLHSPEVMGELEKQSASFFEAEVKRRERER 288
           PAAL   LLE  H+P   G L+   AS    +V RRE ER
Sbjct: 436 PAALLAALLEEFHAPH-GGPLDVLKAS----DVHRRETER 332


  Database: G.niphandrodes/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 15,362,869
  Number of sequences in database:  3680
  
Lambda     K      H
   0.319    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,804,830
Number of Sequences: 3680
Number of extensions: 127744
Number of successful extensions: 797
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 154
Number of HSP's gapped (non-prelim): 692
length of query: 386
length of database: 5,120,956
effective HSP length: 97
effective length of query: 289
effective length of database: 4,763,996
effective search space: 1376794844
effective search space used: 1376794844
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)