TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|70879148|gb|EAN92345.1| hypothetical protein, conserved
[Trypanosoma cruzi]
         (386 letters)

Database: D.discoideum_AX4/genome.fa 
           6 sequences; 33,943,072 total letters

Searching......done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromoso...    31   1.9  
gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromos...    29   7.2  

>gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromosome 5,
              whole genome shotgun sequence
          Length = 5125352

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = -3

Query: 5      LVLLSGLPGAGKTTLSLAIQRLSEQVTTEGERSNSRHGGVVEAVLELDTFISSYEER 61
              ++LL G+PGAGK+ L   +     +   EGE   + H  V E   + DT   S ++R
Sbjct: 288366 MILLMGIPGAGKSLLLKVLGNRLGKGKIEGELKFNNH-EVDETTHQRDTIFVSQDDR 288199


>gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromosome 2,
               whole genome shotgun sequence
          Length = 8484197

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 5       LVLLSGLPGAGKTTLSLAIQRLSEQ 29
               + ++ G PG+GKTTLS  I + S Q
Sbjct: 5470799 VTIIEGQPGSGKTTLSFLISKFSIQ 5470725


  Database: D.discoideum_AX4/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 33,943,072
  Number of sequences in database:  6
  
Lambda     K      H
   0.319    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,343,243
Number of Sequences: 6
Number of extensions: 118512
Number of successful extensions: 429
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 402
Number of HSP's gapped (non-prelim): 131
length of query: 386
length of database: 11,314,357
effective HSP length: 103
effective length of query: 283
effective length of database: 11,313,739
effective search space: 3201788137
effective search space used: 3201788137
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)