TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|70879148|gb|EAN92345.1| hypothetical protein, conserved [Trypanosoma cruzi] (386 letters) Database: C.fasciculata/genome.fa 1089 sequences; 37,048,325 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value Cf_Contig765 | | 1 to 162644 112 4e-25 Cf_Contig705 | | 1 to 66510 35 0.083 Cf_Contig899 | | 1 to 170923 33 0.54 Cf_Contig1061 | | 1 to 139244 31 1.6 Cf_Contig944 | | 1 to 108260 31 2.1 Cf_Contig1015 | | 1 to 112272 30 3.5 Cf_Contig903 | | 1 to 108483 30 3.5 Cf_Contig1066 | | 1 to 293964 30 4.6 Cf_Contig1072 | | 1 to 216731 29 6.0 Cf_Contig1043 | | 1 to 264934 29 6.0 Cf_Contig1027 | | 1 to 144188 29 6.0 Cf_Contig927 | | 1 to 107493 29 6.0 Cf_Contig826 | | 1 to 175982 29 6.0 Cf_Contig992 | | 1 to 103020 29 7.8 Cf_Contig892 | | 1 to 169734 29 7.8 Cf_Contig785 | | 1 to 197696 29 7.8 Cf_Contig764 | | 1 to 40652 29 7.8 >Cf_Contig765 | | 1 to 162644 Length = 162644 Score = 112 bits (281), Expect = 4e-25 Identities = 101/366 (27%), Positives = 157/366 (42%), Gaps = 45/366 (12%) Frame = +3 Query: 5 LVLLSGLPGAGKTT-LSLAIQRLSEQVTTEGERSNSRHGGVVEAVLELDTFISSYEERDG 63 L+LL+GLPGAGK++ L A ++ Q + R G V A+L+LD + S Sbjct: 55731 LILLTGLPGAGKSSFLQEAQHHVAAQPSQLFPLFGGRRCGRVAALLQLDAVLQSLASSPS 55910 Query: 64 TQRNGSN--FSPEAWRRACDEVREATFQRIRQCLLNPE-----KKRGRNMSSTTTRFVFL 116 + R FSPE W++A +E+ T +R CL + + S +F+ Sbjct: 55911 SSREPEPPIFSPERWKQAVEELHRQTESELRTCLREARAHSCSRDAAASKSEAAIPVIFV 56090 Query: 117 VDTLPYRSMRASYWKLCRDLGKEQFQHKLERDGVMNKCDGRVPFDAVFVNMVEIRLNTPI 176 D + RSMR +++LCR L E + + DG DG FV ++E+R P+ Sbjct: 56091 EDNMHLRSMRERFYRLCRRLETEMEEGEKMLDGTSTVADG-------FVAVLEVRFTVPV 56249 Query: 177 EICLERNERRTETPQ------------YVPPHVIKNMGGSFDVGVDTSAKFSADD----- 219 +C+ERN RR Q VP VI +M F+ VD SA+ + DD Sbjct: 56250 AVCVERNMRRARAQQSGSVSANSAASAAVPTAVILSMDVLFERCVDASAEAALDDGEASE 56429 Query: 220 -NCWVVSPRQASTPWPVIWLEEVKTNCCLPPAALAQK------------LLERLHS---- 262 W P ++ PW +I L PPAA A++ LE +H+ Sbjct: 56430 RTWWRWIP--STQPWSLIEL--------TPPAAAARQQETYEGGDYLPAALELVHAFFTY 56579 Query: 263 ---PEVMGELEKQSASFFEAEVKRRERERCDHDQPQEGDAAKASRSDWLHQVDLRLRAVV 319 + Q + RR++ + ++ + AS HQ+DL+LRAVV Sbjct: 56580 TLQKAAWRACQSQRVRVAQQHRARRQQLEAVKGRAEQQQRSAASIHSHAHQLDLQLRAVV 56759 Query: 320 QQYMKE 325 +++ Sbjct: 56760 HLLLEK 56777 >Cf_Contig705 | | 1 to 66510 Length = 66510 Score = 35.4 bits (80), Expect = 0.083 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = -1 Query: 233 WPVIWLEEVKTNCCLPPAALAQKLLERLHSP 263 WP +WL ++ CC+PPA A+ L P Sbjct: 61818 WPPVWLPSLRCRCCMPPACTAEPFFACLCHP 61726 >Cf_Contig899 | | 1 to 170923 Length = 170923 Score = 32.7 bits (73), Expect = 0.54 Identities = 20/74 (27%), Positives = 35/74 (47%) Frame = +3 Query: 31 TTEGERSNSRHGGVVEAVLELDTFISSYEERDGTQRNGSNFSPEAWRRACDEVREATFQR 90 TT GE + +VL L F + EER+ + + +P+ W++ C+E+ Q Sbjct: 71298 TT*GENERQKSTTTANSVLSLSPFQTRREERESLR----DTAPKRWQQKCNELHRHRRQG 71465 Query: 91 IRQCLLNPEKKRGR 104 +Q +K+R R Sbjct: 71466 GQQTSAKGKKRRER 71507 >Cf_Contig1061 | | 1 to 139244 Length = 139244 Score = 31.2 bits (69), Expect = 1.6 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%) Frame = -3 Query: 259 RLHSPEVMGELEKQSASFFEAEVKRRE---RERC-DHDQPQEGDAAKASRSDWLHQ 310 R H + M ++SA +++ E ERC + GDAA A+ DWLH+ Sbjct: 35760 RCHCRQTMQHARRRSAQRHHPRLQQHEDGQAERCCPYASSSSGDAAWAAEDDWLHR 35593 >Cf_Contig944 | | 1 to 108260 Length = 108260 Score = 30.8 bits (68), Expect = 2.1 Identities = 26/101 (25%), Positives = 44/101 (43%) Frame = -2 Query: 187 TETPQYVPPHVIKNMGGSFDVGVDTSAKFSADDNCWVVSPRQASTPWPVIWLEEVKTNCC 246 +E + + PH+ ++ V D A A+++ +P + T W EEV T Sbjct: 93121 SEMVEPIAPHIYADVASVATVDDDGDADDDAEEDRPSSAPAEEQTAW-----EEVAT--- 92966 Query: 247 LPPAALAQKLLERLHSPEVMGELEKQSASFFEAEVKRRERE 287 A A ++ E H P + EL SA E E+++ E + Sbjct: 92965 ----AAAAEVEEGSHVPTLAPELVSFSAEQDEEEMEKEEED 92855 >Cf_Contig1015 | | 1 to 112272 Length = 112272 Score = 30.0 bits (66), Expect = 3.5 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Frame = +3 Query: 209 VDTSAKFSADDN--CWVVSPRQASTPWPVIWLEEVKTNCCLPPAALAQKLLERLHSP 263 V TSA ADD C R S W V+W E C P+ +L +L+SP Sbjct: 72462 VCTSASTFADDERACRAACRR*QSASWAVVWREGCGGAPCGSPSLYCAELRLKLYSP 72632 >Cf_Contig903 | | 1 to 108483 Length = 108483 Score = 30.0 bits (66), Expect = 3.5 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Frame = -2 Query: 209 VDTSAKFSADDN--CWVVSPRQASTPWPVIWLEEVKTNCCLPPAALAQKLLERLHSP 263 V TSA ADD C R S W V+W E C P+ +L +L+SP Sbjct: 98990 VCTSASTFADDERACRAACRR*QSVSWAVVWREGCGGAPCGSPSLYCAELRLKLYSP 98820 >Cf_Contig1066 | | 1 to 293964 Length = 293964 Score = 29.6 bits (65), Expect = 4.6 Identities = 27/87 (31%), Positives = 38/87 (43%) Frame = +1 Query: 261 HSPEVMGELEKQSASFFEAEVKRRERERCDHDQPQEGDAAKASRSDWLHQVDLRLRAVVQ 320 HS E+ G + + E KRR RER D+P + + R L +V R A Sbjct: 152125 HSVEIQGRIAR--------ERKRRGREREKRDKPCKTTLKELQRRSGLPRVTFR-SASAS 152277 Query: 321 QYMKEFKKSGKLLPGTGALVSKCREEQ 347 Q + SG+ P AL SK + E+ Sbjct: 152278 QCFRSIAASGR-CPRGSALGSKKKVEE 152355 >Cf_Contig1072 | | 1 to 216731 Length = 216731 Score = 29.3 bits (64), Expect = 6.0 Identities = 13/42 (30%), Positives = 17/42 (40%) Frame = +1 Query: 203 GSFDVGVDTSAKFSADDNCWVVSPRQASTPWPVIWLEEVKTN 244 G D D + D C V ++ WP +W EE K N Sbjct: 46909 GIIDSNADRCVRTQRDRVCACVCNKEYYESWPTVWKEEKKKN 47034 >Cf_Contig1043 | | 1 to 264934 Length = 264934 Score = 29.3 bits (64), Expect = 6.0 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = +1 Query: 241 VKTNCCLPPAALAQKLLERLHSPEVMGELEKQSASFFEA 279 V+ C PPAA A++ LH +G LE Q+ EA Sbjct: 247747 VRGRLCAPPAARARRE*SELHHAPCLGRLESQARHAGEA 247863 >Cf_Contig1027 | | 1 to 144188 Length = 144188 Score = 29.3 bits (64), Expect = 6.0 Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 9/93 (9%) Frame = +2 Query: 207 VGVDTSAKFSADDNCWVVSPRQASTPWPVIWLEEVKTNCCLPPA---ALAQKLLERLHSP 263 V VD S + D+C S W W C PPA + A L R HSP Sbjct: 113201 VWVDASMRREGFDSCG------CSCWWYCRWRRVRLAQSCFPPAPPPSYASLHLPRFHSP 113362 Query: 264 ---EVMGELEKQSASFFEAEVKR---RERERCD 290 EV+G+ +K F + E+ER D Sbjct: 113363 VVDEVVGKRKKCCTRFLPVASRTEYGEEQERAD 113461 >Cf_Contig927 | | 1 to 107493 Length = 107493 Score = 29.3 bits (64), Expect = 6.0 Identities = 19/49 (38%), Positives = 22/49 (44%) Frame = +1 Query: 259 RLHSPEVMGELEKQSASFFEAEVKRRERERCDHDQPQEGDAAKASRSDW 307 R + M ELE + SFF E KRRER A+AS S W Sbjct: 57916 RKATSNTMKELEGEKGSFFVVE*KRRERSEV---------KARASMSSW 58035 >Cf_Contig826 | | 1 to 175982 Length = 175982 Score = 29.3 bits (64), Expect = 6.0 Identities = 15/48 (31%), Positives = 24/48 (50%) Frame = +3 Query: 282 KRRERERCDHDQPQEGDAAKASRSDWLHQVDLRLRAVVQQYMKEFKKS 329 +RR +CD Q+ A SRS W H+ + + ++ MK +KS Sbjct: 152901 RRRSGRQCDRHDHQQPTAVAFSRSGWCHRRGWKGKKKRKKRMKRGEKS 153044 >Cf_Contig992 | | 1 to 103020 Length = 103020 Score = 28.9 bits (63), Expect = 7.8 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Frame = -1 Query: 65 QRNGSNFSPEAWRRACDEVREATFQ-RIRQCLLNPEKKRGRNMSSTTTRFVFLVDTLPYR 123 Q NG S + RR + A+F R CL PEK+R + +T+ L T YR Sbjct: 95229 QANGRERSQKGKRRGTESFASASFDLRSLSCL--PEKRRKLDPLDASTKVTLLRKTCCYR 95056 Query: 124 S 124 S Sbjct: 95055 S 95053 >Cf_Contig892 | | 1 to 169734 Length = 169734 Score = 28.9 bits (63), Expect = 7.8 Identities = 32/124 (25%), Positives = 49/124 (39%), Gaps = 21/124 (16%) Frame = +2 Query: 6 VLLSGLPGAGKTTLS--LAIQRLSEQVTTEGERSNSRHGGVVEAVLELDTFISSYEERDG 63 +L++G PG GKT+++ LA + Q G+ H E ELDT I E+ D Sbjct: 106232 ILITGTPGTGKTSMAEMLAAELEGFQHVEVGKLVKENH-FYTEYDAELDTHIIEEEDEDH 106408 Query: 64 ----------------TQRNGSNFSPEAWRRACDEVREAT---FQRIRQCLLNPEKKRGR 104 + S PE W + +T F+R+ + + KRG Sbjct: 106409 LLDFMEPLMVKGGNHVVDYHSSELFPERWFHLVIVLHTSTEVLFERLTNRKYS-DAKRGE 106585 Query: 105 NMSS 108 NM + Sbjct: 106586 NMEA 106597 Score = 28.9 bits (63), Expect = 7.8 Identities = 32/124 (25%), Positives = 49/124 (39%), Gaps = 21/124 (16%) Frame = +2 Query: 6 VLLSGLPGAGKTTLS--LAIQRLSEQVTTEGERSNSRHGGVVEAVLELDTFISSYEERDG 63 +L++G PG GKT+++ LA + Q G+ H E ELDT I E+ D Sbjct: 110951 ILITGTPGTGKTSMAEMLAAELEGFQHVEVGKLVKENH-FYTEYDAELDTHIIEEEDEDH 111127 Query: 64 ----------------TQRNGSNFSPEAWRRACDEVREAT---FQRIRQCLLNPEKKRGR 104 + S PE W + +T F+R+ + + KRG Sbjct: 111128 LLDFMEPLMVKGGNHVVDYHSSELFPERWFHLVIVLHTSTEVLFERLTNRKYS-DAKRGE 111304 Query: 105 NMSS 108 NM + Sbjct: 111305 NMEA 111316 >Cf_Contig785 | | 1 to 197696 Length = 197696 Score = 28.9 bits (63), Expect = 7.8 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%) Frame = -3 Query: 6 VLLSGLPGAGKTTLSLAIQRLSEQVTTEGERSNSRHGG---VVEAVLELD 52 +LL G PG GKTT L + R T+ + GG + +AVLEL+ Sbjct: 135927 LLLCGPPGTGKTTSMLCLARDLLLQNTDAATGADKAGGKDILKDAVLELN 135778 Score = 28.9 bits (63), Expect = 7.8 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%) Frame = -2 Query: 6 VLLSGLPGAGKTTLSLAIQRLSEQVTTEGERSNSRHGG---VVEAVLELD 52 +LL G PG GKTT L + R T+ + GG + +AVLEL+ Sbjct: 133750 LLLCGPPGTGKTTSMLCLARDLLLQNTDAATGADKAGGKDILKDAVLELN 133601 >Cf_Contig764 | | 1 to 40652 Length = 40652 Score = 28.9 bits (63), Expect = 7.8 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 18/78 (23%) Frame = +3 Query: 216 SADDNCWVVSPRQASTPWPVIWLEEVKTNCC-------------LPPAAL-----AQKLL 257 SA CW + R+ASTPW + +K+ LPP L ++L Sbjct: 25593 SASSPCWPKTRRRASTPWRSAFNASIKSAATRQSSRPFLPSQRPLPPLLLFPAPRPLRVL 25772 Query: 258 ERLHSPEVMGELEKQSAS 275 R HS + G +S+S Sbjct: 25773 RRRHSRQRCGSRPTRSSS 25826 Database: C.fasciculata/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 37,048,325 Number of sequences in database: 1089 Lambda K H 0.319 0.133 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,391,399 Number of Sequences: 1089 Number of extensions: 358783 Number of successful extensions: 2776 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 201 Number of HSP's successfully gapped in prelim test: 114 Number of HSP's that attempted gapping in prelim test: 2000 Number of HSP's gapped (non-prelim): 1599 length of query: 386 length of database: 12,349,441 effective HSP length: 103 effective length of query: 283 effective length of database: 12,237,274 effective search space: 3463148542 effective search space used: 3463148542 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 62 (28.5 bits)