TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|70879148|gb|EAN92345.1| hypothetical protein, conserved
[Trypanosoma cruzi]
         (386 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330847461|gb|ADNL01003142.1| Astrammina rara contig02501, who...    24   4.1  
gi|330847843|gb|ADNL01002760.1| Astrammina rara contig03249, who...    24   5.3  
gi|330850530|gb|ADNL01000073.1| Astrammina rara contig00076, who...    23   9.1  

>gi|330847461|gb|ADNL01003142.1| Astrammina rara contig02501, whole
           genome shotgun sequence
          Length = 539

 Score = 24.3 bits (51), Expect = 4.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 220 NCWVVSPRQASTPWPVIWLEEVKTNCCL 247
           +CW+VS    +T    +W+    + CCL
Sbjct: 104 SCWLVS*A*DTTNGNDVWITRNNSRCCL 187


>gi|330847843|gb|ADNL01002760.1| Astrammina rara contig03249, whole
            genome shotgun sequence
          Length = 1870

 Score = 23.9 bits (50), Expect = 5.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 220  NCWVVSPRQASTPWPVIWLEEVKTNC 245
            N ++VSP  + T W +  L  V+  C
Sbjct: 1628 NMYIVSPETSETYWKIAQLINVRVVC 1551


>gi|330850530|gb|ADNL01000073.1| Astrammina rara contig00076, whole
           genome shotgun sequence
          Length = 556

 Score = 23.1 bits (48), Expect = 9.1
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
 Frame = -2

Query: 80  CDEVREATFQRIRQCLLNPEKKRGRNMSSTTTR--------FVFLVDT-LPYRSMRASYW 130
           CD    A  Q++R+  LN      RN+   TT         F+F   + +PY+   +S W
Sbjct: 303 CDRAA-AI*QQLRELSLNLVN---RNLCHITTTK*TVYSGLFMFTEQSCIPYKHSHSSVW 136

Query: 131 KLCRDLGKEQFQHKLERDGVMNKC 154
             C  +   + +H      V++KC
Sbjct: 135 SYCLTVTLSEREHP-----VIHKC 79


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.319    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 625,738
Number of Sequences: 3231
Number of extensions: 7926
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of query: 386
length of database: 483,365
effective HSP length: 76
effective length of query: 310
effective length of database: 237,809
effective search space: 73720790
effective search space used: 73720790
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)