TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|70879148|gb|EAN92345.1| hypothetical protein, conserved [Trypanosoma cruzi] (386 letters) Database: A.laibachii_Nc14/genome.fa 3816 sequences; 32,740,139 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|325183031|emb|FR824081.1| Albugo laibachii Nc14, genomic cont... 30 3.0 gi|325181994|emb|FR824067.1| Albugo laibachii Nc14, genomic cont... 30 4.0 gi|325188878|emb|FR824238.1| Albugo laibachii Nc14, genomic cont... 29 5.2 gi|325185388|emb|FR824126.1| Albugo laibachii Nc14, genomic cont... 29 6.7 gi|325179861|emb|FR824048.1| Albugo laibachii Nc14, genomic cont... 28 8.8 gi|325180954|emb|FR824056.1| Albugo laibachii Nc14, genomic cont... 28 8.8 gi|325184497|emb|FR824106.1| Albugo laibachii Nc14, genomic cont... 28 8.8 gi|325186688|emb|FR824161.1| Albugo laibachii Nc14, genomic cont... 28 8.8 gi|325188145|emb|FR824209.1| Albugo laibachii Nc14, genomic cont... 28 8.8 >gi|325183031|emb|FR824081.1| Albugo laibachii Nc14, genomic contig CONTIG_36_NC14_v4_137019_239 Length = 137019 Score = 30.0 bits (66), Expect = 3.0 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 2/100 (2%) Frame = +2 Query: 119 TLPYRSMR--ASYWKLCRDLGKEQFQHKLERDGVMNKCDGRVPFDAVFVNMVEIRLNTPI 176 T+P+ S+ A + C + ++QF + D V C G P + + +R T Sbjct: 3014 TIPFNSLYFPAFFCAYCMQVRRQQFANDTLADAVDQMCAGESPTKVASLLRIPLRTLTK- 3190 Query: 177 EICLERNERRTETPQYVPPHVIKNMGGSFDVGVDTSAKFS 216 ++ L R+ E + PP ++ G ++ V +FS Sbjct: 3191 QVKLRRSGADLELARRGPPPMLTKEGAAYLVEWIKGMQFS 3310 >gi|325181994|emb|FR824067.1| Albugo laibachii Nc14, genomic contig CONTIG_22_NC14_v4_183579_236 Length = 183579 Score = 29.6 bits (65), Expect = 4.0 Identities = 14/60 (23%), Positives = 30/60 (50%) Frame = +2 Query: 238 LEEVKTNCCLPPAALAQKLLERLHSPEVMGELEKQSASFFEAEVKRRERERCDHDQPQEG 297 +++++ +CC P + + +L +P + ELE + E++R + D D +EG Sbjct: 77702 IKKIRMHCCADPKTSLETISAQLSTPMLPAELE---INHINREIERMRKTERDSDINEEG 77872 >gi|325188878|emb|FR824238.1| Albugo laibachii Nc14, genomic contig CONTIG_193_NC14_v4_49246_243 Length = 49246 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = +1 Query: 6 VLLSGLPGAGKTTLSLAIQRLSEQVTTEGERSNSRHGGVVEAVL 49 +LLSG PG GKTT++ + + E S++R +++A L Sbjct: 2068 ILLSGPPGIGKTTIATLVSKHCGFECIEFNASDTRSKKILKATL 2199 >gi|325185388|emb|FR824126.1| Albugo laibachii Nc14, genomic contig CONTIG_81_NC14_v4_91342_214 Length = 91342 Score = 28.9 bits (63), Expect = 6.7 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%) Frame = +2 Query: 34 GERSNSRHGGVVEAVLELDTFISSYEERDGTQRNGSNFSPEAWRRACD--EVREATFQRI 91 G+RS H +++VLEL +S+ E D +G WR+ D ++ + Sbjct: 88205 GQRSLFHH---IQSVLELAVTVSTLEREDHFGAHGLQLHGRVWRKEHDYHALQLHAMSSM 88375 Query: 92 RQCLLNPE 99 R+C++ E Sbjct: 88376 RRCIVEKE 88399 >gi|325179861|emb|FR824048.1| Albugo laibachii Nc14, genomic contig CONTIG_3_NC14_v4_366484_228 Length = 366484 Score = 28.5 bits (62), Expect = 8.8 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 5/68 (7%) Frame = +3 Query: 6 VLLSGLPGAGKTTLSLAIQRLSEQ-----VTTEGERSNSRHGGVVEAVLELDTFISSYEE 60 V +GLPG+GK+T+ A++RL Q + +G+ N R G L D S+ + Sbjct: 346263 VWFTGLPGSGKSTIGKALERLLLQKRAHVIQLDGD--NLRLG------LNQDLSFSNADR 346418 Query: 61 RDGTQRNG 68 ++ +R G Sbjct: 346419 KESVRRAG 346442 >gi|325180954|emb|FR824056.1| Albugo laibachii Nc14, genomic contig CONTIG_11_NC14_v4_227311_235 Length = 227311 Score = 28.5 bits (62), Expect = 8.8 Identities = 16/41 (39%), Positives = 23/41 (56%) Frame = -1 Query: 5 LVLLSGLPGAGKTTLSLAIQRLSEQVTTEGERSNSRHGGVV 45 ++LL G PGAGKTTL+ I + + E S+ R V+ Sbjct: 98848 IILLCGPPGAGKTTLAHIIAKHAGYNAVEINASDDRTAQVL 98726 >gi|325184497|emb|FR824106.1| Albugo laibachii Nc14, genomic contig CONTIG_61_NC14_v4_102988_231 Length = 102988 Score = 28.5 bits (62), Expect = 8.8 Identities = 17/53 (32%), Positives = 27/53 (50%) Frame = -3 Query: 172 LNTPIEICLERNERRTETPQYVPPHVIKNMGGSFDVGVDTSAKFSADDNCWVV 224 LN I I RNE+ T + ++KN+ GS+ +D + +SA CW + Sbjct: 47750 LNRDI*ILHSRNEKMTARGERSGTLMLKNVSGSYT--MDPTGIWSAPSICWKI 47598 >gi|325186688|emb|FR824161.1| Albugo laibachii Nc14, genomic contig CONTIG_116_NC14_v4_73775_212 Length = 73775 Score = 28.5 bits (62), Expect = 8.8 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 5/68 (7%) Frame = +3 Query: 6 VLLSGLPGAGKTTLSLAIQRLSEQ-----VTTEGERSNSRHGGVVEAVLELDTFISSYEE 60 V +GLPG+GK+T+ A++RL Q + +G+ N R G L D S+ + Sbjct: 11277 VWFTGLPGSGKSTIGKALERLLLQKRAHVIQLDGD--NLRLG------LNQDLSFSNADR 11432 Query: 61 RDGTQRNG 68 ++ +R G Sbjct: 11433 KESVRRAG 11456 >gi|325188145|emb|FR824209.1| Albugo laibachii Nc14, genomic contig CONTIG_164_NC14_v4_56461_235 Length = 56461 Score = 28.5 bits (62), Expect = 8.8 Identities = 9/26 (34%), Positives = 20/26 (76%) Frame = +3 Query: 5 LVLLSGLPGAGKTTLSLAIQRLSEQV 30 +++L G+PG+GK+T++ + R+ Q+ Sbjct: 28368 IIILRGIPGSGKSTVARQLSRILPQI 28445 Database: A.laibachii_Nc14/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 32,740,139 Number of sequences in database: 3816 Lambda K H 0.319 0.133 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,742,394 Number of Sequences: 3816 Number of extensions: 218454 Number of successful extensions: 1221 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 350 Number of HSP's successfully gapped in prelim test: 75 Number of HSP's that attempted gapping in prelim test: 665 Number of HSP's gapped (non-prelim): 824 length of query: 386 length of database: 10,913,379 effective HSP length: 102 effective length of query: 284 effective length of database: 10,524,147 effective search space: 2988857748 effective search space used: 2988857748 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 62 (28.5 bits)