TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|27369676|ref|NP_766078.1| O-phosphoseryl-tRNA(Sec) selenium
transferase [Mus musculus]
         (504 letters)

Database: T.congolense/genome.fa 
           11 sequences; 22,287,946 total letters

Searching...........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T.congo.pschr.11                                                      194   1e-78
T.congo.pschr.8                                                        32   1.0  
T.congo.pschr.7                                                        30   3.9  

>T.congo.pschr.11
          Length = 4797796

 Score =  194 bits (492), Expect(2) = 1e-78
 Identities = 106/279 (37%), Positives = 160/279 (57%), Gaps = 50/279 (17%)
 Frame = -3

Query: 1       MNPESFAAGERRVSPAYVRQGCEARRAHEHLIRLLLEQGKCPEDGWDESTLELFLHELAV 60
               M+  +    E  V P Y++ G E++R+ E  +R +L Q +CP++G ++  +EL LH++A+
Sbjct: 3680408 MDERALHLAESIVEPRYIQAGVESQRSVERTVRSILAQRRCPDEGLNDCAIELLLHQIAM 3680229

Query: 61      MDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNS 120
               MD+NNF  + G GEREGRVAS LV RR+Y   HG+GRSGDI + QPKAAGSSLL K+TN 
Sbjct: 3680228 MDTNNFTAHVGAGEREGRVASTLVQRRYYNLTHGVGRSGDICSDQPKAAGSSLLYKLTNH 3680049

Query: 121     LVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPK------------------- 161
               +VL++++ AG  S+AS  V+PMATGM+++L   ++ H R +                   
Sbjct: 3680048 MVLDLLRQAGTPSLASAAVIPMATGMTISLVLRSIAHHRDQETRTRATEAAVDDQRRSDC 3679869

Query: 162     ---------AKYIIWPRIDQKSCFKSMVTAGFEPVVIE---------------------N 191
                         +++IW R+DQK+  K +  +GF PVV+                      +
Sbjct: 3679868 GATSVAPVAPRFVIWTRVDQKTALKCIELSGFIPVVVPLRRASVLRRYRDEDKDGPGAVS 3679689

Query: 192     VLEGDELRTDLKAVEAKIQEL-GPEHILCLHSTTACFAP 229
                L    L+  +  V A I+ + GP ++LC+ STT+CFAP
Sbjct: 3679688 SLHSYFLQAHVDDVAASIERVGGPTNVLCVLSTTSCFAP 3679572



 Score =  118 bits (296), Expect(2) = 1e-78
 Identities = 84/241 (34%), Positives = 120/241 (49%), Gaps = 41/241 (17%)
 Frame = -1

Query: 257     LQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRASA 316
               +QS   M  I    R+GR+DA VQS DKNF+VPVGGA+++G     +   + +Y GRASA
Sbjct: 3679570 VQSRSIMQRIDAAIRLGRVDAIVQSGDKNFLVPVGGAVLSG-GRTEVARATSLYAGRASA 3679394

Query: 317     SPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQ----------- 365
               SP +D+ IT LSLG SG+++L   R  +   L  +L+  A A  E LL            
Sbjct: 3679393 SPVVDLFITALSLGRSGFQRLWDARYFLRELLEQRLRDFARAREETLLDEFDPQGDMHGV 3679214

Query: 366     ---------------------------TPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTR 398
                                             N IS A+T++ I G  + A   +G+ LF  
Sbjct: 3679213 HDDGSCNRHNSSGLSAATDTRRGDAKYALRNDISFAITMRNIGGPSEAAA--VGARLFRG 3679040

Query: 399     QVSGARAVPLGNVQTVS--GHTFRGFMSHADNYP-CAYLNAAAAIGMKMQDVDLFIKRLD 455
                V+G R V L N + +S  GH FR +  H D+ P C  L  A  +GMK++D +  +KRL+
Sbjct: 3679039 AVTGPRVV-LPNEEKISLCGHLFRNYGMHTDDTPACPLLVLACGVGMKIEDAEGLMKRLE 3678863

Query: 456     K 456
               +
Sbjct: 3678862 E 3678860


>T.congo.pschr.8
          Length = 2451971

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 46/207 (22%), Positives = 77/207 (37%), Gaps = 47/207 (22%)
 Frame = +2

Query: 104    VQPKAA-GSSLLNKITNSLVLNVIK-LAGVHSVA------SCFVVPM------ATGMSLT 149
              V+P+   G+S L    +S ++N  K + GVH  A      +  VVP          +  T
Sbjct: 850136 VEPRVVYGASSLEMYVSSYLMNKSKSITGVHQAAYQAVAMALEVVPRILTSNCGANVIRT 850315

Query: 150    LCFLTLRHKRPKAKY-----------------IIWPRIDQKSCFKSMVTAGFEPVVIENV 192
              +  L  RH  P   Y                 ++ P   +    K+ V A    + +++V
Sbjct: 850316 VTELRARHAMPDGDYWGVDGTTGDIVDVRSLRVLEPAAVKVQALKTAVEAASMVLRVDDV 850495

Query: 193    LEGDELRTDL--KAVEAKIQELG-------------PEHILCLHSTTACFAPRVPDRLEE 237
              + G +LR +   K   A  Q  G             P H    H  + CF  R+PD    
Sbjct: 850496 VSGTKLRHEKENKPAPAAAQGAGNDDEQGEGEAA**PLHARDTHRFSVCFLYRIPDLWYF 850675

Query: 238    LAV-ICANYDIPHVVNNAYGLQSSKCM 263
              + V +    ++P+ V +A+      C+
Sbjct: 850676 IFVPMSRATEVPYTVAHAFAYTFDGCL 850756


>T.congo.pschr.7
          Length = 2148087

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = -2

Query: 383     HHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGM 442
               HH +A  + G M  T   + A A+P+G   T+     RG  SH   +   +   A A+G+
Sbjct: 2015117 HHTRASARFGCMR-TASRTFAHALPVGGGGTIPSCRTRGPPSHRSPHAATWTAKALAVGL 2014941


  Database: T.congolense/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 22,287,946
  Number of sequences in database:  11
  
Lambda     K      H
   0.321    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,339,250
Number of Sequences: 11
Number of extensions: 205078
Number of successful extensions: 947
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 840
Number of HSP's gapped (non-prelim): 320
length of query: 504
length of database: 7,429,315
effective HSP length: 102
effective length of query: 402
effective length of database: 7,428,193
effective search space: 2986133586
effective search space used: 2986133586
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)