TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|27369676|ref|NP_766078.1| O-phosphoseryl-tRNA(Sec) selenium
transferase [Mus musculus]
         (504 letters)

Database: S.arctica/genome.fa 
           15,618 sequences; 121,588,341 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.837 of Sphaeroforma arctica JP610                          134   8e-31
supercont1.25 of Sphaeroforma arctica JP610                            35   0.36 
supercont1.297 of Sphaeroforma arctica JP610                           31   9.0  

>supercont1.837 of Sphaeroforma arctica JP610
          Length = 39100

 Score =  134 bits (336), Expect = 8e-31
 Identities = 60/108 (55%), Positives = 82/108 (75%)
 Frame = -1

Query: 93    HGIGRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCF 152
             HGIGRSGDISA QPKAAGSSL++K+T   +L ++KL+G     SC+V P+ATGM++ +C 
Sbjct: 22576 HGIGRSGDISAHQPKAAGSSLMSKLTQYFMLEILKLSGATRTKSCYVFPLATGMAVVMCL 22397

Query: 153   LTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRT 200
             L L+ K P A +++WPRIDQK+C K++V  GF PVVIEN+ E ++  T
Sbjct: 22396 LALKAKNPTATHVVWPRIDQKTCLKAIVATGFIPVVIENITEDNDKGT 22253



 Score =  133 bits (334), Expect = 1e-30
 Identities = 67/132 (50%), Positives = 93/132 (70%), Gaps = 8/132 (6%)
 Frame = -3

Query: 254   AYGLQSSKCMH-------LIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPF-IQD 305
             AY   S KC+        +  Q  R+GR+DA+VQS DKNF+VPVGG++IAG ++   + D
Sbjct: 21371 AYPKLSCKCLSDL*IYSLIFSQAMRLGRVDAYVQSTDKNFLVPVGGSVIAGPDKHLKVAD 21192

Query: 306   ISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQ 365
             + K YPGRAS +P+LDV ITLLS+G +GY+  L +RKE++  L  ++ ++A  H ERLL 
Sbjct: 21191 VCKTYPGRASGTPTLDVFITLLSMGSNGYKHRLLQRKEIYEILKQKMSEVAAKHGERLLH 21012

Query: 366   TPHNPISLAMTL 377
             TPHNPISLA+T+
Sbjct: 21011 TPHNPISLAITI 20976



 Score = 84.3 bits (207), Expect = 7e-16
 Identities = 41/74 (55%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
 Frame = -3

Query: 196   DELRTDLKAVEAKIQELG-PEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNA 254
             DELRTDL A+E  I+  G PE +LC+ STT+CFAPR  D++ E+AV+C    I HVVNNA
Sbjct: 21743 DELRTDLPAIEDAIKRAGGPEKVLCVLSTTSCFAPRAFDKVSEIAVMCERLGIAHVVNNA 21564

Query: 255   YGLQSSKCMHLIQQ 268
             YG+ SS  MH + +
Sbjct: 21563 YGVTSSLIMHHVNE 21522



 Score = 74.7 bits (182), Expect = 5e-13
 Identities = 43/109 (39%), Positives = 64/109 (58%), Gaps = 3/109 (2%)
 Frame = -3

Query: 353   KKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKA---VTQLGSMLFTRQVSGARAVPLG 409
             +KLA      + +T     +     + I+ H D     VT+LG+MLF R VSGAR V   
Sbjct: 20639 EKLATNEGSSISKTSAQHSAARSAPRPINPHPDSDATDVTRLGAMLFRRGVSGARVVSAD 20460

Query: 410   NVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCL 458
             +V+ V+G +F+G+ +HAD Y   YL  AAA+GM  +DV+  ++R+DK L
Sbjct: 20459 DVKVVAGVSFKGYGAHADAYFTPYLTVAAALGMTRKDVEQVVERIDKTL 20313



 Score = 63.2 bits (152), Expect = 2e-09
 Identities = 29/64 (45%), Positives = 43/64 (67%)
 Frame = -1

Query: 34    LLLEQGKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRFIH 93
             +L  Q + P  GWD++T++LFL +L++MDSNNF    G GEREGR+ S+LV   H  ++ 
Sbjct: 23377 VLCIQRRLPVGGWDDATIKLFLQDLSLMDSNNFNEYSGAGEREGRIESSLVRDMHNGYVS 23198

Query: 94    GIGR 97
              + R
Sbjct: 23197 AV*R 23186


>supercont1.25 of Sphaeroforma arctica JP610
          Length = 228082

 Score = 35.4 bits (80), Expect = 0.36
 Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 1/125 (0%)
 Frame = +3

Query: 51     LELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAG 110
              L L  H ++  D     G CG  ER+ R++    + +H      I    DI    P   G
Sbjct: 114048 LGLIAHVVSEGDVPGHTG-CGWSERDRRLSYNCQSAKH------IPMCRDIRTDMPFKPG 114206

Query: 111    SSLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYII-WPR 169
              S  L+      +  ++ +A ++     F+VP A  +++ LC    R      K+I+ WP 
Sbjct: 114207 SRYLSNR*RQKM*VLLSVAAIYF*RYIFIVPSARPLTMLLCLKDARTCTRTTKHILTWPN 114386

Query: 170    IDQKS 174
              I  +S
Sbjct: 114387 ISAQS 114401


>supercont1.297 of Sphaeroforma arctica JP610
          Length = 93083

 Score = 30.8 bits (68), Expect = 9.0
 Identities = 22/69 (31%), Positives = 34/69 (49%)
 Frame = +3

Query: 372 SLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPC 431
           +L   L  +  +HD  V    S+ + ++ SG R+    +V T+  HT R F+SHA  Y C
Sbjct: 444 ALLPMLPKLASNHDTPVIPKHSLPWNQRHSGKRSGAT-SVWTLRRHTTR-FLSHAFGYSC 617

Query: 432 AYLNAAAAI 440
           A L     +
Sbjct: 618 ATLECPITV 644


  Database: S.arctica/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 121,588,341
  Number of sequences in database:  15,618
  
Lambda     K      H
   0.321    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,746,588
Number of Sequences: 15618
Number of extensions: 1077570
Number of successful extensions: 4393
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 210
Number of HSP's that attempted gapping in prelim test: 3076
Number of HSP's gapped (non-prelim): 2171
length of query: 504
length of database: 40,529,447
effective HSP length: 114
effective length of query: 390
effective length of database: 38,748,995
effective search space: 15112108050
effective search space used: 15112108050
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)