TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|27369676|ref|NP_766078.1| O-phosphoseryl-tRNA(Sec) selenium
transferase [Mus musculus]
         (504 letters)

Database: P.capsici/genome.fa 
           917 sequences; 64,023,748 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PHYCAscaffold_58                                                      257   e-114
PHYCAscaffold_122                                                      31   3.8  

>PHYCAscaffold_58
          Length = 327658

 Score =  257 bits (656), Expect(2) = e-114
 Identities = 128/254 (50%), Positives = 178/254 (70%), Gaps = 7/254 (2%)
 Frame = -3

Query: 1      MNPESFAAGERRVSPAYVRQGCEARRAHEHLIRLLLEQGKCPEDGWDESTLELFLHELAV 60
              MN +S A  E+ +   YV+QG  A R+ E L+  LL Q + P++GWD++++E+ L  L+ 
Sbjct: 326858 MNSKSAALAEQLIPSTYVKQGLGAIRSREALVTTLLAQRRLPDEGWDDASVEMLLQTLSA 326679

Query: 61     MDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNS 120
              MDSNNF G+ G GERE RV S +VARRH+R  HG+GRSGD++AVQPKAAGSSLL ++ NS
Sbjct: 326678 MDSNNFQGSAGAGEREARVFSPMVARRHFRLAHGVGRSGDVAAVQPKAAGSSLLVQLANS 326499

Query: 121    LVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMV 180
              L  +V++LAG+ +V +  V+P+ATGMSLTL  L L   +P A Y+IWPRIDQKSCFKS++
Sbjct: 326498 LAKDVLRLAGMRAVQAALVLPVATGMSLTLVLLQLNELKPGAHYVIWPRIDQKSCFKSIL 326319

Query: 181    TAGFEPVVIENVLEGDE-------LRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPD 233
               AG  P+V+ NVL  +E       L+TDL  +   I + G + IL + STT+CFAPR  D
Sbjct: 326318 AAGLTPLVLPNVLVEEEDGRLGGYLKTDLAGMAELIDQYGADSILAVMSTTSCFAPRAYD 326139

Query: 234    RLEELAVICANYDI 247
               ++E+A +C + +I
Sbjct: 326138 SVQEIAKMCQDRNI 326097



 Score =  175 bits (444), Expect(2) = e-114
 Identities = 111/302 (36%), Positives = 155/302 (51%), Gaps = 78/302 (25%)
 Frame = -1

Query: 249    HVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISK 308
              HV+NNAYG+Q+SKC+H ++   RVGR+DA VQSLDKNFMVPVGGAI+   +   +  ++K
Sbjct: 326020 HVINNAYGVQASKCVHEVELAMRVGRVDAVVQSLDKNFMVPVGGAIVCSASRDLVDRVAK 325841

Query: 309    MYPGRASASPSLDVLITLLSL----------------------GCSGYRKLLKERKEMFV 346
               YPGRASA+P+LD  IT+L +                      G SGYR+LL ERK + V
Sbjct: 325840 FYPGRASATPTLDFFITMLQMVSSPEIHVI*LLSSSSQLVCYQGKSGYRQLLDERKHLAV 325661

Query: 347    YLSTQLKKLAEAHNERLLQTPHNP-----------------------ISLAMTLKTIDG- 382
              Y+  +L+ LA    ER+L+   N                        IS A+TL T+   
Sbjct: 325660 YMREKLESLAAEEGERVLRVSSNEVLVGCVLEWLGISAFLTLKCCAQISFALTLGTLCSD 325481

Query: 383    -----HHDKAVTQLGSMLFTRQVSGAR---------------------------AVPLGN 410
                      + +T LGSMLF+R VSGAR                            V   +
Sbjct: 325480 VMDKKEKSQQLTFLGSMLFSRGVSGAR*VYTCSDLIGWFACCY*PSDF*DHCYRVVSCLD 325301

Query: 411    VQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKEQTRASV 470
               +T++GH F  F +H D +P AY+  A A+GM+  +VDL I +L K +   R +Q++A  
Sbjct: 325300 RKTIAGHDFDSFGAHYDEFPVAYVTFACALGMRRDEVDLLITKLRKTIQEWRTKQSKALS 325121

Query: 471    VS 472
              V+
Sbjct: 325120 VT 325115


>PHYCAscaffold_122
          Length = 61064

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
 Frame = -1

Query: 387   AVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRG------FMSHADNYPCAY 433
             +V  +G   F    + AR VP     TVSGH FR       F+   D   C Y
Sbjct: 10553 SVIAVGRSTFAETPTSARVVPTRRQTTVSGHRFRARSGCVQFLCAVDEVRCCY 10395


  Database: P.capsici/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 64,023,748
  Number of sequences in database:  917
  
Lambda     K      H
   0.321    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,957,294
Number of Sequences: 917
Number of extensions: 556090
Number of successful extensions: 2655
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 2278
Number of HSP's gapped (non-prelim): 982
length of query: 504
length of database: 21,341,249
effective HSP length: 109
effective length of query: 395
effective length of database: 21,241,296
effective search space: 8390311920
effective search space used: 8390311920
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)