TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|27369676|ref|NP_766078.1| O-phosphoseryl-tRNA(Sec) selenium transferase [Mus musculus] (504 letters) Database: L.tarentolae/genome.fa 7267 sequences; 31,598,840 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Lt_contig6577 | | 1 to 12105 283 3e-76 Lt_contig5254 | | 1 to 4927 31 1.8 Lt_contig5806 | | 1 to 8586 31 2.3 Lt_contig186 | | 1 to 20410 31 2.3 Lt_contig2385 | | 1 to 3783 30 3.0 Lt_contig7217 | | 1 to 10860 30 4.0 Lt_contig6093 | | 1 to 4897 30 5.2 Lt_contig4705 | | 1 to 2710 29 8.8 Lt_contig3486 | | 1 to 4946 29 8.8 Lt_contig834 | | 1 to 7497 29 8.8 >Lt_contig6577 | | 1 to 12105 Length = 12105 Score = 283 bits (723), Expect = 3e-76 Identities = 195/584 (33%), Positives = 276/584 (47%), Gaps = 130/584 (22%) Frame = -3 Query: 1 MNPESFAAGERRVSPAYVRQGCEARRAHEHLIRLLLEQGKCPEDGWDESTLELFLHELAV 60 M+ S E V Y+ G E+ R+ ++R +L Q +CP++ ++ +EL L +L++ Sbjct: 6691 MDDRSLKLAEDFVPARYIDAGGESLRSTARILRCILAQRRCPDEALTDAAIELILRQLSL 6512 Query: 61 MDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNS 120 MD+NNF + G GEREGRV SALV RH+ HGIGRSGD+ + QPKAAGSSLL KITN Sbjct: 6511 MDTNNFAHHVGGGEREGRVVSALVRMRHFHLTHGIGRSGDLFSEQPKAAGSSLLYKITNV 6332 Query: 121 LVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKA------------------ 162 L+L++++ AG S A+ VVPM+TGM+L L + R + Sbjct: 6331 LMLDLLRQAGAPSTAAAVVVPMSTGMTLALVLRCVAKSRTEELMKEAEAVQPQLTVTKDS 6152 Query: 163 ---------------------------------KYIIWPRIDQKSCFKSMVTAGFEPVVI 189 +Y+IWPRIDQK+ K + AG PV + Sbjct: 6151 TSAASAAQVQEPSTSEADRAGHDRTSLLVPATPRYVIWPRIDQKTALKCIDAAGLIPVPV 5972 Query: 190 EN--------------VLEGDELRTDLKA--------------VEAKIQEL--------G 213 + D L D + +E ++ ++ G Sbjct: 5971 QLRPAVTLARSADPWVSANRDSLGRDKGSTGSPVTPTSSSSLFLECRVDDVAAAVNAVGG 5792 Query: 214 PEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVG 273 P ++C+ STT+CFAPR+PD +A C IP+VVNNAYG+QS + M + R+G Sbjct: 5791 PSQVVCVLSTTSCFAPRLPDNTVGIAQYCKEAGIPYVVNNAYGVQSRRIMTRLDAAQRLG 5612 Query: 274 RIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSG 333 R+D VQS DKNF+VPVGG+II+ ++ Q ++ +Y GRAS SP +D+ IT LSLG G Sbjct: 5611 RVDFVVQSGDKNFLVPVGGSIISSSDKARCQAVAALYAGRASMSPIVDLFITALSLGRRG 5432 Query: 334 YRKLLKERKEMFVYLSTQLKKLAEAHNERLL--------------------QTPHNPISL 373 + L +R L QL++ A E LL T N IS+ Sbjct: 5431 MQALWSDRYRCRARLIRQLREFARERREVLLVDDTDDKADTVSGSKTIPGTVTARNDISV 5252 Query: 374 AMTLKTIDGHHDK--------------------AVTQLGSMLFTRQVSGARAV--PLGNV 411 A+T++T K A G+ LF V+G R + Sbjct: 5251 AVTMRTYGLPTAKVGSSGVQRESAQVEKVANWAAARAFGAQLFRSAVTGPRVITPAPSTP 5072 Query: 412 QTVSGHTFRGFMSHAD-NYPCAYLNAAAAIGMKMQDVDLFIKRL 454 T++G TFR + H D PC L A IGM +VD + RL Sbjct: 5071 TTIAGCTFRNYGMHQDWAPPCPLLVIACGIGMSEAEVDALMARL 4940 >Lt_contig5254 | | 1 to 4927 Length = 4927 Score = 31.2 bits (69), Expect = 1.8 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = +1 Query: 157 HKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVL 193 H + K +Y +PRI ++CF + +T P V+ +VL Sbjct: 196 HPKTKQRYQRYPRIRVRACFDASITRFSPPFVVRSVL 306 >Lt_contig5806 | | 1 to 8586 Length = 8586 Score = 30.8 bits (68), Expect = 2.3 Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 4/112 (3%) Frame = -1 Query: 153 LTLRHKRPKAKYIIWPRID-QKSCFKSMVTA---GFEPVVIENVLEGDELRTDLKAVEAK 208 L+LR + +W R Q CF+ + + G P V E RT L +EA+ Sbjct: 1905 LSLRRSLDSTQRHLWRRGGVQLRCFREIAPSSPRGALPCVPVICCCSREPRTTLLGIEAE 1726 Query: 209 IQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSS 260 E + +S ACF RVP R+E+L V + A GL S Sbjct: 1725 PLEYDQLSAV-RNSACACFERRVPQRVEDLVCSSEQCRAARVPDYASGLAVS 1573 >Lt_contig186 | | 1 to 20410 Length = 20410 Score = 30.8 bits (68), Expect = 2.3 Identities = 15/53 (28%), Positives = 30/53 (56%) Frame = -2 Query: 185 EPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEE 237 E ++++ +E DLKA A+++++ PE+++ L T+ P RLE+ Sbjct: 8628 ESALVQDAATCEEACDDLKAQ*ARVEDISPENVIWLVHTSRKGGIAAPRRLED 8470 >Lt_contig2385 | | 1 to 3783 Length = 3783 Score = 30.4 bits (67), Expect = 3.0 Identities = 14/26 (53%), Positives = 17/26 (65%) Frame = +3 Query: 67 LGNCGVGEREGRVASALVARRHYRFI 92 L CG GER+ VA A+ A R YRF+ Sbjct: 2004 LRRCGGGERDACVAPAIAAIRDYRFL 2081 >Lt_contig7217 | | 1 to 10860 Length = 10860 Score = 30.0 bits (66), Expect = 4.0 Identities = 18/56 (32%), Positives = 30/56 (53%) Frame = +1 Query: 9 GERRVSPAYVRQGCEARRAHEHLIRLLLEQGKCPEDGWDESTLELFLHELAVMDSN 64 G RRV + R GC R H++R+L+ + P G ++T H++AV D++ Sbjct: 5842 GHRRVQALHARLGCHVRGKCLHVLRVLV---RTPRHG--QATALQRQHDIAVRDTH 5994 >Lt_contig6093 | | 1 to 4897 Length = 4897 Score = 29.6 bits (65), Expect = 5.2 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%) Frame = +2 Query: 276 DAFVQSLDKNFMVPVGGAIIAGFNEPFIQDIS----KMYPGRASASPSLDVLITLLSLG 330 + F+ S D G ++ +GF++ F D+ ++Y A SLD+ LLSLG Sbjct: 356 NVFLPSFDAAVCSSCGVSVFSGFDDLFAADLRGYLPRLYTRAAEVLSSLDLYSILLSLG 532 >Lt_contig4705 | | 1 to 2710 Length = 2710 Score = 28.9 bits (63), Expect = 8.8 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = +1 Query: 361 ERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVP 407 E+LLQ + A+ T HH + + GS + QVS +R P Sbjct: 2131 EQLLQRDRQTVHAALVACT*SAHHHRPSARTGSRIPGAQVSSSRIAP 2271 >Lt_contig3486 | | 1 to 4946 Length = 4946 Score = 28.9 bits (63), Expect = 8.8 Identities = 23/70 (32%), Positives = 27/70 (38%) Frame = +3 Query: 9 GERRVSPAYVRQGCEARRAHEHLIRLLLEQGKCPEDGWDESTLELFLHELAVMDSNNFLG 68 G R VS R G A E R ++ G D S +ELF +E A M Sbjct: 3147 GSRAVSVGTTRSGKAAGVEGEQ--RPMMG*GMLQLDRLFRSNVELFFYENAAMKQRRGCV 3320 Query: 69 NCGVGEREGR 78 CGVG R Sbjct: 3321 GCGVGSHRNR 3350 >Lt_contig834 | | 1 to 7497 Length = 7497 Score = 28.9 bits (63), Expect = 8.8 Identities = 18/57 (31%), Positives = 29/57 (50%) Frame = -2 Query: 114 LNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRI 170 L ++ SL+L + K+ VH+ SCF VP FL+L++K + I R+ Sbjct: 5024 LPPLSFSLILFLFKVCSVHTSVSCFSVP----------FLSLKNKGMSWSHFIDSRV 4884 Database: L.tarentolae/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 31,598,840 Number of sequences in database: 7267 Lambda K H 0.321 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,438,402 Number of Sequences: 7267 Number of extensions: 325831 Number of successful extensions: 1873 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 742 Number of HSP's successfully gapped in prelim test: 121 Number of HSP's that attempted gapping in prelim test: 1053 Number of HSP's gapped (non-prelim): 1053 length of query: 504 length of database: 10,532,946 effective HSP length: 104 effective length of query: 400 effective length of database: 9,777,178 effective search space: 3910871200 effective search space used: 3910871200 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 63 (28.9 bits)