TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|27369676|ref|NP_766078.1| O-phosphoseryl-tRNA(Sec) selenium
transferase [Mus musculus]
         (504 letters)

Database: L.donovani_BPK282A1/genome.fa 
           36 sequences; 32,444,998 total letters

Searching....................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

contig_09                                                             285   8e-77
contig_14                                                              31   2.0  
contig_27                                                              31   2.6  
contig_36                                                              30   3.3  
contig_33                                                              29   9.7  

>contig_09
          Length = 588727

 Score =  285 bits (728), Expect = 8e-77
 Identities = 200/587 (34%), Positives = 277/587 (47%), Gaps = 133/587 (22%)
 Frame = -2

Query: 1      MNPESFAAGERRVSPAYVRQGCEARRAHEHLIRLLLEQGKCPEDGWDESTLELFLHELAV 60
              M+  S    E  VS  Y+  G E+ RA   ++R +L Q  CP++G  ++ +EL L +L++
Sbjct: 381999 MDDRSLKLAEDFVSARYIEAGRESLRATARIMRSILAQRCCPDEGLTDAAIELILRQLSL 381820

Query: 61     MDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNS 120
              MD+NN   + G GEREGRV SALV  RH+   HGIGRSGD+ + QPKAAGSSLL KITN 
Sbjct: 381819 MDTNNLAHHVGGGEREGRVVSALVRMRHFHLTHGIGRSGDLFSEQPKAAGSSLLYKITNV 381640

Query: 121    LVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTL------------------------- 155
              L+L++I+ AG  S A+  VVPMATGM+L L    +                         
Sbjct: 381639 LMLDLIRQAGAPSTAAAVVVPMATGMTLALVLRCVAKTHMKELMKEAEAVQLQRTVTKDS 381460

Query: 156    --------------------RHKRPKA------KYIIWPRIDQKSCFKSMVTAGFEPVVI 189
                                  RH R         +Y+IWPRIDQK+  K +  AG  PV +
Sbjct: 381459 TSATSAAPVQEPPMSEADRDRHDRTSLPVPATPRYVIWPRIDQKTALKCIDAAGLVPVPV 381280

Query: 190    E--------------------NVLEGDE---------------LRTDLKAVEAKIQELG- 213
              +                    ++  G +               L   +  V A +  +G 
Sbjct: 381279 QLRPAVPLARSAAPCVSTNRDSLDRGQDSIGSPSTPTSSSSLFLECHVDDVAAAVNAVGG 381100

Query: 214    PEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVG 273
              P  ++C+ STT+CFAPR+PD    +A  C    IP+VVNNAYG+QS + M  +    R+G
Sbjct: 381099 PSQVVCVLSTTSCFAPRLPDNTVAIAQYCKKAGIPYVVNNAYGVQSRRIMTRLDAAQRLG 380920

Query: 274    RIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSG 333
              R+D  VQS DKNF+VPVGG+II   ++   + ++ +Y GRAS SP +D+ IT LSLG  G
Sbjct: 380919 RVDFVVQSGDKNFLVPVGGSIICSGDKERCKAVAALYAGRASMSPIVDLFITALSLGRRG 380740

Query: 334    YRKLLKERKEMFVYLSTQLKKLAEAHNERLL-----------------------QTPHNP 370
               + L  +R +    L  QL+  A    E LL                         P N 
Sbjct: 380739 MQTLWSDRYKCRARLIRQLRVFARERREVLLVDDSDDDKADEDTVGGSQRTSNAVVPRND 380560

Query: 371    ISLAMTLKT--------------IDGHHDKAVTQ------LGSMLFTRQVSGARAV--PL 408
              IS+A+T++               +       VT       LG+ LF   V+G R +    
Sbjct: 380559 ISVAVTMRAYGLPAAEASSSGAQLGSEQAGRVTNWAAARALGAQLFRSAVTGPRVITPAP 380380

Query: 409    GNVQTVSGHTFRGFMSHADNY-PCAYLNAAAAIGMKMQDVDLFIKRL 454
                  T++G TFR +  H D   PC  L  A  IGM   +VD  + RL
Sbjct: 380379 STPTTIAGCTFRNYGMHQDREPPCPLLVIACGIGMSESEVDALMARL 380239


>contig_14
          Length = 645099

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 22/78 (28%), Positives = 36/78 (46%)
 Frame = -3

Query: 305    DISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLL 364
              DI  + P   SA   + +LI+LL +   GY+  LKE KE+   +     + A+A  +   
Sbjct: 208756 DIPLLVPIVVSAGLVVVLLISLLLMYLCGYKPALKEEKELCAKIEDVQTRTAKAEEKLAA 208577

Query: 365    QTPHNPISLAMTLKTIDG 382
              +   N  S +   +T  G
Sbjct: 208576 KRRRNQRSASSLARTPRG 208523


>contig_27
          Length = 1024085

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 25     RRAHEHLIRLLLEQGKCPEDGWDESTLELFLHELAVMD--SNNFLGNCGV 72
              R   E L+R   E+GKC   GWD   +E+     A +   S+ +L +CGV
Sbjct: 946640 RHGEEKLVRRHGERGKCGGGGWDPENIEVPDGATAALCSLSSLYLPHCGV 946789


>contig_36
          Length = 2713248

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
 Frame = +2

Query: 37     EQGKCPEDGWDESTL-ELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGI 95
              EQG+  E  W  + L  LFL  +   +++     C +G R   + +A +AR H    HG 
Sbjct: 631949 EQGE--EQRWGTAFLVRLFLMHIMARETHPLRKTCTLGRRRTLILTAALARAHLAKTHG- 632119

Query: 96     GRSGDISAVQPKAAGSSLLNKIT 118
                        P+A   S  NK T
Sbjct: 632120 ----------PRAISKSTQNKET 632158


>contig_33
          Length = 1453978

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 193    LEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAP 229
              +EGDEL   +K  + K  ++GPE   C+ +T  C +P
Sbjct: 103526 IEGDELSGKVKKKQRKCFDVGPEP-RCISATPKCASP 103633


  Database: L.donovani_BPK282A1/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,444,998
  Number of sequences in database:  36
  
Lambda     K      H
   0.321    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,245,591
Number of Sequences: 36
Number of extensions: 344971
Number of successful extensions: 1934
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1867
Number of HSP's gapped (non-prelim): 160
length of query: 504
length of database: 10,814,999
effective HSP length: 105
effective length of query: 399
effective length of database: 10,811,219
effective search space: 4313676381
effective search space used: 4313676381
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)