TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|27369676|ref|NP_766078.1| O-phosphoseryl-tRNA(Sec) selenium
transferase [Mus musculus]
         (504 letters)

Database: I.multifiliis_strain_G5/genome.fa 
           2017 sequences; 48,799,969 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|340503345|gb|GL984089.1| Ichthyophthirius multifiliis unplace...   308   7e-84

>gi|340503345|gb|GL984089.1| Ichthyophthirius multifiliis unplaced
             genomic scaffold scaff_1120509251127, whole genome shotgun
             sequence
          Length = 102005

 Score =  308 bits (790), Expect = 7e-84
 Identities = 183/459 (39%), Positives = 286/459 (62%), Gaps = 12/459 (2%)
 Frame = -3

Query: 13    VSPAYVRQGCEARRAHEHLIRLLLEQGKCPEDGWDESTLELFLHELAVMDSNNFLGNCGV 72
             +SP Y++    + +   + I++LL   +       +  +EL + +L++MD+NNF    GV
Sbjct: 24348 ISPQYIK*SQNSFQTFSNTIKILLS*RQLFPHPLPDLEIELLISQLSLMDTNNFSQKIGV 24169

Query: 73    GEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVH 132
             GEREGR+ S +V +RH+   HGIGRSG++SA QPKA GSSL+ KIT  LV +++KL G+ 
Sbjct: 24168 GEREGRIIS*IVQKRHFYMSHGIGRSGNLSAEQPKAPGSSLILKITEFLVKDMLKLVGLC 23989

Query: 133   SVA-SCFVVPMATGMSLTLCFLTLRHKRP----KAKYIIWPRIDQKSCFKSMVTAGFEPV 187
               + +  ++P ATGM+   CFLTL   +     + KY+IW RIDQK+C K ++ A  EP 
Sbjct: 23988 KKSRNLLILPAATGMA---CFLTLMALKKNIS*EKKYVIWSRIDQKTCLKCILAANLEPY 23818

Query: 188   VIENVLEGDELRTDLKAVEAKIQELGPEH-ILCLHSTTACFAPRVPDRLEELAVICANYD 246
             V+E V  GD+L +D++ +   ++    +  +LC+ STT+CFAPR+PD + E+  IC   +
Sbjct: 23817 VLELV*IGDKLCSDVEKLGKLLENNDFKK*VLCVFSTTSCFAPRIPDNITEIGRICFVNN 23638

Query: 247   IPHVVNNAYGLQSSKCMHLIQQG-ARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQD 305
             IPH+VNNAYGL  +K ++LI +  ++  RIDA + S DKNF+VPVGGAII G N+  I++
Sbjct: 23637 IPHIVNNAYGL*CAKIVNLINETYSKNHRIDAIISSTDKNFLVPVGGAIIYGENK*LIKE 23458

Query: 306   ISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQ 365
             I++ YPGRAS SP +D+ IT LS G   +  LL  RKE  +YL  +L  +   + ER+L 
Sbjct: 23457 INENYPGRASLSPIIDLFITFLSTGREKWE*LLNIRKENLIYLKEKLN*VLLKYEERVL* 23278

Query: 366   TPHNPISLAMTLKTI--DGHHDKAVTQLGSMLFTRQVSGARAVPLGN--VQTVSGHTFRG 421
             +  N IS+  TLK I  +  +  ++ +LG +L+ +++ G R + + N  V  +    F+ 
Sbjct: 23277 STENSISVGFTLKNI*KN*KN*ISILELGGILYNKRIMGGRII-INNEKVLKIDNL*FKN 23101

Query: 422   FMSHADNY-PCAYLNAAAAIGMKMQDVDLFIKRLDKCLN 459
             +    D Y    Y+  A AIGM+ +++D+F+ +L + +N
Sbjct: 23100 YGCSNDFYTELPYMTVACAIGMEKKEIDMFLIKL*EGIN 22984


  Database: I.multifiliis_strain_G5/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 48,799,969
  Number of sequences in database:  2017
  
Lambda     K      H
   0.321    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,172,406
Number of Sequences: 2017
Number of extensions: 233174
Number of successful extensions: 463
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 438
Number of HSP's gapped (non-prelim): 36
length of query: 504
length of database: 16,266,656
effective HSP length: 107
effective length of query: 397
effective length of database: 16,050,837
effective search space: 6372182289
effective search space used: 6372182289
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)